Wall clock time and date at job start Tue Mar 31 2020 18:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 F 1.39901 * 110.62599 * 111.97574 * 3 2 1 5 5 C 1.55142 * 110.85465 * 348.76622 * 3 2 1 6 6 C 1.54912 * 101.65016 * 205.89357 * 5 3 2 7 7 N 1.47842 * 104.79742 * 37.06909 * 6 5 3 8 8 C 1.46894 * 111.00242 * 213.63619 * 7 6 5 9 9 C 1.53002 * 109.47151 * 290.84449 * 8 7 6 10 10 H 1.09005 * 109.46888 * 304.99673 * 9 8 7 11 11 O 1.42894 * 109.46991 * 64.99899 * 9 8 7 12 12 C 1.53001 * 109.47251 * 184.99900 * 9 8 7 13 13 O 1.42892 * 109.47195 * 174.99737 * 12 9 8 14 14 C 1.35679 * 117.00240 * 180.02562 * 13 12 9 15 15 C 1.39308 * 119.81180 * 359.72605 * 14 13 12 16 16 C 1.36447 * 120.18280 * 179.76508 * 15 14 13 17 17 C 1.40838 * 119.80660 * 0.51153 * 16 15 14 18 18 C 1.41212 * 120.17776 * 179.72516 * 17 16 15 19 19 H 1.07998 * 120.00443 * 155.16296 * 18 17 16 20 20 C 1.39894 * 119.99656 * 335.16308 * 18 17 16 21 21 N 1.30880 * 120.00303 * 342.16043 * 20 18 17 22 22 Si 1.86805 * 119.99966 * 162.16026 * 20 18 17 23 23 H 1.48499 * 109.47026 * 94.65489 * 22 20 18 24 24 H 1.48499 * 109.47413 * 214.65641 * 22 20 18 25 25 H 1.48504 * 109.47134 * 334.65635 * 22 20 18 26 26 C 1.40832 * 119.64441 * 359.74177 * 17 16 15 27 27 C 1.36434 * 119.81026 * 0.02562 * 26 17 16 28 28 C 1.47453 * 108.56819 * 335.90747 * 7 6 5 29 29 H 1.08995 * 110.99570 * 323.98344 * 5 3 2 30 30 H 1.08996 * 110.98881 * 87.76936 * 5 3 2 31 31 H 1.09003 * 110.37383 * 278.24522 * 6 5 3 32 32 H 1.08999 * 110.37316 * 155.90306 * 6 5 3 33 33 H 1.09002 * 109.47328 * 170.84423 * 8 7 6 34 34 H 1.08999 * 109.47225 * 50.84496 * 8 7 6 35 35 H 0.96698 * 113.99878 * 60.00036 * 11 9 8 36 36 H 1.08997 * 109.47176 * 294.99948 * 12 9 8 37 37 H 1.09006 * 109.47021 * 55.00247 * 12 9 8 38 38 H 1.08001 * 119.91561 * 0.02562 * 15 14 13 39 39 H 1.07992 * 120.09472 * 180.25396 * 16 15 14 40 40 H 0.96998 * 119.99729 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.09360 * 179.97438 * 26 17 16 42 42 H 1.08006 * 119.90830 * 180.02562 * 27 26 17 43 43 H 1.08997 * 109.88885 * 120.39330 * 28 7 6 44 44 H 1.08997 * 109.88163 * 241.41857 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1006 0.4908 -1.2142 5 6 3.1609 -1.4211 0.2824 6 6 4.5476 -1.1015 0.8946 7 7 4.3295 0.1115 1.7111 8 6 5.5186 0.9738 1.7010 9 6 6.6485 0.2937 2.4767 10 1 6.3015 0.0435 3.4793 11 8 7.0414 -0.9002 1.7969 12 6 7.8445 1.2430 2.5730 13 8 8.8544 0.6549 3.3952 14 6 9.9898 1.3730 3.5848 15 6 10.1284 2.6215 2.9824 16 6 11.2650 3.3522 3.1719 17 6 12.3041 2.8361 3.9703 18 6 13.4862 3.5832 4.1670 19 1 14.0900 3.4170 5.0468 20 6 13.8750 4.5386 3.2220 21 7 13.3687 4.5096 2.0154 22 14 15.1171 5.8558 3.6821 23 1 16.4777 5.4141 3.2834 24 1 14.7813 7.1201 2.9793 25 1 15.0798 6.0804 5.1496 26 6 12.1581 1.5709 4.5713 27 6 11.0131 0.8551 4.3756 28 6 3.1531 0.8273 1.1836 29 1 2.5310 -1.9502 0.9975 30 1 3.2632 -1.9908 -0.6411 31 1 5.2737 -0.9027 0.1063 32 1 4.8843 -1.9263 1.5227 33 1 5.2793 1.9283 2.1698 34 1 5.8354 1.1438 0.6720 35 1 7.3619 -0.7528 0.8966 36 1 8.2468 1.4228 1.5760 37 1 7.5239 2.1880 3.0114 38 1 9.3323 3.0140 2.3671 39 1 11.3692 4.3216 2.7076 40 1 13.6386 5.1719 1.3602 41 1 12.9504 1.1680 5.1846 42 1 10.8993 -0.1152 4.8361 43 1 2.3918 0.9114 1.9590 44 1 3.4458 1.8201 0.8421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615645944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:32 Heat of formation + Delta-G solvation = -93.755458 kcal Electronic energy + Delta-G solvation = -27463.674936 eV Core-core repulsion = 23295.121266 eV Total energy + Delta-G solvation = -4168.553670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.18333 -40.72371 -40.06320 -38.54775 -37.80278 -37.09034 -35.17583 -33.37799 -31.57578 -31.36369 -30.35613 -30.27389 -27.11792 -26.12616 -23.67673 -23.39028 -22.75418 -22.07693 -21.96063 -19.85310 -19.24590 -18.66178 -17.90563 -17.54467 -17.20872 -16.83034 -16.55962 -16.15495 -15.84089 -15.76829 -15.57944 -15.54799 -15.10150 -14.75502 -14.64327 -14.36981 -14.23715 -14.16613 -13.98650 -13.80250 -13.59889 -13.36604 -13.32090 -13.13870 -12.82891 -12.74013 -12.67773 -12.37549 -12.28256 -12.22150 -11.97584 -11.82962 -11.65624 -11.53887 -11.17630 -10.88446 -10.78094 -9.53755 -9.41731 -8.87441 -8.58441 -6.20187 0.96501 1.07232 1.28508 1.30063 1.40920 1.50606 1.56659 2.10979 2.24150 2.43576 2.74481 2.96615 3.04041 3.14803 3.52003 3.67382 3.73019 3.91930 4.04308 4.08435 4.17897 4.26259 4.32781 4.35015 4.43560 4.54078 4.54741 4.68861 4.72836 4.81614 4.91996 5.00286 5.03801 5.11951 5.17646 5.21283 5.39510 5.55543 5.69018 5.82292 5.89366 6.00094 6.07973 6.08818 6.26884 6.58849 6.81709 6.87779 6.97543 7.13822 8.38393 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.001886 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.533894 B =14841.326648 C =15496.686148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.214 3.786 3 C 0.204 3.796 4 F -0.181 7.181 5 C -0.135 4.135 6 C 0.050 3.950 7 N -0.523 5.523 8 C 0.025 3.975 9 C 0.130 3.870 10 H 0.104 0.896 11 O -0.560 6.560 12 C 0.029 3.971 13 O -0.327 6.327 14 C 0.003 3.997 15 C -0.175 4.175 16 C -0.154 4.154 17 C 0.052 3.948 18 C -0.500 4.500 19 H 0.074 0.926 20 C 0.035 3.965 21 N -0.831 5.831 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.205 4.205 27 C -0.124 4.124 28 C 0.033 3.967 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.382 0.618 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.287 0.713 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.960 -6.511 -5.810 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.106 4.106 3 C 0.181 3.819 4 F -0.161 7.161 5 C -0.174 4.174 6 C -0.077 4.077 7 N -0.247 5.247 8 C -0.103 4.103 9 C 0.070 3.930 10 H 0.121 0.879 11 O -0.367 6.367 12 C -0.048 4.048 13 O -0.243 6.243 14 C -0.041 4.041 15 C -0.194 4.194 16 C -0.174 4.174 17 C 0.050 3.950 18 C -0.530 4.530 19 H 0.092 0.908 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.800 3.200 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.184 1.184 26 C -0.225 4.225 27 C -0.142 4.142 28 C -0.096 4.096 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.962 -6.977 -4.924 21.712 hybrid contribution 1.399 1.491 -1.540 2.560 sum -18.563 -5.486 -6.464 20.407 Atomic orbital electron populations 1.81267 1.13640 1.08538 1.07131 1.29187 0.94800 0.93025 0.93563 1.19399 0.79777 0.99594 0.83105 1.92996 1.87519 1.89299 1.46317 1.23503 0.97520 0.91822 1.04583 1.23220 0.95095 0.93432 0.95923 1.63616 1.03013 1.06286 1.51793 1.22909 0.90157 0.96924 1.00358 1.21725 0.89460 0.84233 0.97577 0.87862 1.86636 1.86010 1.31589 1.32417 1.23496 0.88771 0.97772 0.94723 1.85861 1.25010 1.45324 1.68093 1.18692 0.88517 0.93078 1.03821 1.20813 0.99419 0.95427 1.03708 1.20913 0.93016 1.00138 1.03344 1.17965 0.93396 0.91534 0.92122 1.19702 1.07560 1.18837 1.06915 0.90772 1.26688 0.98570 0.99135 0.93515 1.69883 1.39722 1.32547 1.03690 0.85237 0.77910 0.77180 0.79638 1.18916 1.19102 1.18395 1.20791 0.98293 0.95524 1.07847 1.19900 0.93017 1.00163 1.01161 1.23530 0.94802 0.97385 0.93879 0.87134 0.86721 0.91656 0.88160 0.88020 0.92079 0.76918 0.92212 0.91462 0.86114 0.87595 0.90289 0.87442 0.86455 0.87096 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.66 18.54 20.01 0.37 -8.29 16 2 C 0.21 3.14 14.31 89.44 1.28 4.42 16 3 C 0.20 2.11 1.49 -11.42 -0.02 2.09 16 4 F -0.18 -2.39 16.93 44.97 0.76 -1.63 16 5 C -0.14 -1.02 6.30 31.98 0.20 -0.81 16 6 C 0.05 0.51 5.07 86.78 0.44 0.95 16 7 N -0.52 -6.17 5.16 -885.53 -4.57 -10.74 16 8 C 0.02 0.31 4.39 86.30 0.38 0.69 16 9 C 0.13 2.48 3.44 30.60 0.11 2.59 16 10 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 11 O -0.56 -11.02 10.78 -144.34 -1.56 -12.58 16 12 C 0.03 0.74 4.36 71.98 0.31 1.06 16 13 O -0.33 -12.10 10.09 -85.33 -0.86 -12.96 16 14 C 0.00 0.13 6.71 22.79 0.15 0.28 16 15 C -0.17 -7.81 8.96 22.11 0.20 -7.62 16 16 C -0.15 -7.98 8.64 22.49 0.19 -7.78 16 17 C 0.05 2.80 5.57 -21.28 -0.12 2.68 16 18 C -0.50 -26.93 9.04 23.40 0.21 -26.71 16 19 H 0.07 3.86 7.91 -2.91 -0.02 3.83 16 20 C 0.03 1.74 5.13 85.24 0.44 2.17 16 21 N -0.83 -43.01 10.97 21.82 0.24 -42.78 16 22 Si 0.98 37.92 29.60 68.60 2.03 39.96 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 24 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 26 C -0.20 -10.11 9.74 22.48 0.22 -9.90 16 27 C -0.12 -5.62 9.92 22.11 0.22 -5.40 16 28 C 0.03 0.31 6.25 86.64 0.54 0.85 16 29 H 0.11 0.71 8.03 -2.39 -0.02 0.69 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.61 6.97 -2.39 -0.02 0.59 16 32 H 0.10 1.23 7.60 -2.39 -0.02 1.21 16 33 H 0.10 1.11 8.03 -2.39 -0.02 1.09 16 34 H 0.06 0.66 7.85 -2.39 -0.02 0.64 16 35 H 0.38 5.24 8.70 -74.06 -0.64 4.60 16 36 H 0.06 1.48 7.64 -2.39 -0.02 1.46 16 37 H 0.07 1.64 7.66 -2.38 -0.02 1.63 16 38 H 0.12 4.57 6.27 -2.91 -0.02 4.55 16 39 H 0.11 5.68 6.18 -2.91 -0.02 5.66 16 40 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 41 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.11 0.94 7.81 -2.39 -0.02 0.92 16 44 H 0.10 0.75 7.52 -2.39 -0.02 0.73 16 Total: -1.00 -65.84 371.57 1.57 -64.27 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.40 Total: 25.18 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.76 Total: -40.43 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -3.96 Total: -61.80 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -2.42 Total: -25.54 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.76 Total: -1.63 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.96 kcal Total: -65.84 1.57 -64.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615645944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.482 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds