Wall clock time and date at job start Tue Mar 31 2020 18:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 F 1.39903 * 110.63040 * 238.84934 * 3 2 1 5 5 C 1.55142 * 110.70988 * 2.15147 * 3 2 1 6 6 C 1.54907 * 101.65550 * 82.72567 * 5 3 2 7 7 N 1.47851 * 104.79209 * 37.07061 * 6 5 3 8 8 C 1.46905 * 110.99805 * 213.63414 * 7 6 5 9 9 C 1.53000 * 109.47203 * 290.84658 * 8 7 6 10 10 H 1.09003 * 109.47287 * 60.00251 * 9 8 7 11 11 O 1.42906 * 109.47136 * 300.00296 * 9 8 7 12 12 C 1.52998 * 109.47243 * 180.02562 * 9 8 7 13 13 O 1.42899 * 109.47313 * 185.00273 * 12 9 8 14 14 C 1.35672 * 116.99934 * 179.97438 * 13 12 9 15 15 C 1.39315 * 119.82159 * 359.72055 * 14 13 12 16 16 C 1.36435 * 120.18495 * 179.75749 * 15 14 13 17 17 C 1.40833 * 119.81457 * 0.52039 * 16 15 14 18 18 C 1.41207 * 120.17956 * 179.71850 * 17 16 15 19 19 H 1.08007 * 119.99967 * 204.55654 * 18 17 16 20 20 C 1.39891 * 120.00284 * 24.55357 * 18 17 16 21 21 N 1.30877 * 119.99695 * 17.93940 * 20 18 17 22 22 Si 1.86796 * 120.00150 * 197.93505 * 20 18 17 23 23 H 1.48508 * 109.47328 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47092 * 120.00178 * 22 20 18 25 25 H 1.48504 * 109.47448 * 240.00462 * 22 20 18 26 26 C 1.40837 * 119.63981 * 359.73618 * 17 16 15 27 27 C 1.36441 * 119.80906 * 0.02562 * 26 17 16 28 28 C 1.47442 * 108.57027 * 335.90381 * 7 6 5 29 29 H 1.08997 * 110.99174 * 200.81984 * 5 3 2 30 30 H 1.09005 * 110.98680 * 324.63769 * 5 3 2 31 31 H 1.09000 * 110.37554 * 278.24571 * 6 5 3 32 32 H 1.08997 * 110.37589 * 155.90017 * 6 5 3 33 33 H 1.08992 * 109.47239 * 170.84751 * 8 7 6 34 34 H 1.09001 * 109.46774 * 50.84454 * 8 7 6 35 35 H 0.96700 * 113.99390 * 299.99702 * 11 9 8 36 36 H 1.09003 * 109.46727 * 304.99586 * 12 9 8 37 37 H 1.08998 * 109.47125 * 64.99864 * 12 9 8 38 38 H 1.07996 * 119.89847 * 0.02562 * 15 14 13 39 39 H 1.08000 * 120.08916 * 180.25243 * 16 15 14 40 40 H 0.97001 * 119.99925 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.09585 * 179.97438 * 26 17 16 42 42 H 1.08001 * 119.90174 * 180.02562 * 27 26 17 43 43 H 1.09000 * 109.88534 * 120.39540 * 28 7 6 44 44 H 1.08998 * 109.88796 * 241.58304 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1006 0.6782 1.1205 5 6 3.1573 -1.4492 -0.0545 6 6 3.0884 -1.7532 -1.5719 7 7 3.4482 -0.4785 -2.2289 8 6 2.7184 -0.3135 -3.4931 9 6 3.2326 -1.3294 -4.5152 10 1 3.0763 -2.3387 -4.1345 11 8 4.6277 -1.1154 -4.7390 12 6 2.4729 -1.1571 -5.8320 13 8 2.8698 -2.1794 -6.7482 14 6 2.2852 -2.1703 -7.9724 15 6 1.3402 -1.1944 -8.2816 16 6 0.7512 -1.1753 -9.5121 17 6 1.0929 -2.1522 -10.4672 18 6 0.4838 -2.1432 -11.7411 19 1 0.4197 -3.0556 -12.3155 20 6 -0.0368 -0.9526 -12.2591 21 7 0.3338 0.1973 -11.7557 22 14 -1.2606 -1.0038 -13.6694 23 1 -1.5135 -2.4157 -14.0544 24 1 -2.5348 -0.3720 -13.2423 25 1 -0.7071 -0.2648 -14.8325 26 6 2.0453 -3.1384 -10.1448 27 6 2.6285 -3.1405 -8.9113 28 6 3.1533 0.6281 -1.3002 29 1 4.1851 -1.4912 0.3059 30 1 2.5193 -2.1299 0.5094 31 1 2.0791 -2.0534 -1.8533 32 1 3.8043 -2.5315 -1.8359 33 1 2.8746 0.6957 -3.8738 34 1 1.6543 -0.4768 -3.3223 35 1 4.8410 -0.2356 -5.0790 36 1 1.4015 -1.2322 -5.6458 37 1 2.7003 -0.1797 -6.2575 38 1 1.0763 -0.4485 -7.5465 39 1 0.0218 -0.4157 -9.7515 40 1 -0.0269 1.0229 -12.1152 41 1 2.3125 -3.8913 -10.8714 42 1 3.3593 -3.8958 -8.6626 43 1 4.0646 1.1872 -1.0884 44 1 2.4035 1.2882 -1.7363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615645946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:42 Heat of formation + Delta-G solvation = -93.460368 kcal Electronic energy + Delta-G solvation = -27477.495119 eV Core-core repulsion = 23308.954245 eV Total energy + Delta-G solvation = -4168.540874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.12586 -40.79987 -40.25248 -38.63512 -37.75238 -37.14172 -35.20631 -33.35381 -31.60504 -31.38723 -30.49061 -30.06783 -27.14433 -26.17505 -23.94053 -23.69418 -22.84163 -22.07874 -21.86729 -19.73301 -19.27707 -18.67066 -17.95619 -17.53454 -17.27980 -16.93370 -16.58063 -16.06929 -15.97153 -15.79214 -15.60188 -15.52027 -15.19857 -14.93842 -14.71411 -14.41558 -14.27826 -14.20252 -14.06431 -13.82982 -13.66709 -13.40127 -13.28013 -13.21457 -12.91212 -12.77644 -12.70456 -12.47363 -12.31827 -12.22688 -12.02879 -11.78366 -11.67314 -11.58833 -11.22282 -10.95340 -10.84115 -9.57519 -9.46503 -8.91575 -8.61217 -6.23128 0.92647 1.03797 1.22094 1.22916 1.39063 1.49689 1.54081 2.08162 2.22020 2.33509 2.71358 2.89775 3.07423 3.11567 3.38938 3.56204 3.69849 3.87591 4.00171 4.03209 4.16276 4.18684 4.26171 4.28536 4.37891 4.40936 4.48499 4.59358 4.69955 4.79347 4.87934 4.94323 4.97005 5.00206 5.04375 5.14656 5.36445 5.51534 5.65634 5.73815 5.77977 5.96511 6.01687 6.05855 6.23262 6.55559 6.78697 6.92846 6.94620 7.09872 8.35716 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.001983 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.872164 B =14118.211291 C =14814.887124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.202 3.798 3 C 0.207 3.793 4 F -0.171 7.171 5 C -0.128 4.128 6 C 0.032 3.968 7 N -0.509 5.509 8 C 0.023 3.977 9 C 0.132 3.868 10 H 0.098 0.902 11 O -0.553 6.553 12 C 0.027 3.973 13 O -0.326 6.326 14 C 0.000 4.000 15 C -0.176 4.176 16 C -0.156 4.156 17 C 0.053 3.947 18 C -0.498 4.498 19 H 0.075 0.925 20 C 0.033 3.967 21 N -0.831 5.831 22 Si 0.981 3.019 23 H -0.259 1.259 24 H -0.265 1.265 25 H -0.266 1.266 26 C -0.205 4.205 27 C -0.122 4.122 28 C 0.034 3.966 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.384 0.616 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.287 0.713 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 2.477 21.882 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.118 4.118 3 C 0.184 3.816 4 F -0.152 7.152 5 C -0.167 4.167 6 C -0.095 4.095 7 N -0.233 5.233 8 C -0.105 4.105 9 C 0.072 3.928 10 H 0.116 0.884 11 O -0.359 6.359 12 C -0.049 4.049 13 O -0.242 6.242 14 C -0.043 4.043 15 C -0.194 4.194 16 C -0.176 4.176 17 C 0.051 3.949 18 C -0.528 4.528 19 H 0.093 0.907 20 C -0.180 4.180 21 N -0.458 5.458 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.191 1.191 26 C -0.224 4.224 27 C -0.141 4.141 28 C -0.095 4.095 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.151 0.849 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.243 2.013 22.050 22.754 hybrid contribution -1.485 1.016 -0.756 1.952 sum 3.758 3.029 21.294 21.835 Atomic orbital electron populations 1.81289 1.13840 1.08135 1.07274 1.29608 0.95339 0.93226 0.93617 1.19361 0.79176 0.96789 0.86308 1.92997 1.87220 1.81631 1.53319 1.23423 1.05394 0.90523 0.97323 1.23266 1.00953 0.93154 0.92171 1.63630 1.55146 1.01786 1.02742 1.22939 0.96051 1.00906 0.90638 1.21658 0.81365 0.99992 0.89821 0.88365 1.86598 1.22342 1.39271 1.87692 1.23510 0.99634 0.91235 0.90526 1.85857 1.64511 1.51953 1.21881 1.18697 1.00023 0.99345 0.86280 1.20797 1.00547 0.99931 0.98163 1.20917 1.02395 1.01695 0.92582 1.17965 0.91106 0.92085 0.93743 1.19735 1.35087 0.96026 1.01985 0.90674 1.26715 0.96673 0.94103 1.00547 1.69890 1.36442 0.99244 1.40212 0.85177 0.77844 0.79599 0.77190 1.18251 1.19018 1.19129 1.20805 1.01219 1.03492 0.96917 1.19909 1.02297 0.98931 0.92957 1.23601 1.03235 0.94484 0.88193 0.85031 0.87713 0.93226 0.87661 0.88062 0.93200 0.76700 0.92100 0.91975 0.86425 0.87585 0.90271 0.87274 0.86309 0.84931 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.56 18.54 20.00 0.37 -9.19 16 2 C 0.20 3.26 14.08 89.44 1.26 4.52 16 3 C 0.21 2.11 1.60 -11.42 -0.02 2.09 16 4 F -0.17 -2.00 16.93 44.97 0.76 -1.24 16 5 C -0.13 -0.90 6.36 31.98 0.20 -0.69 16 6 C 0.03 0.34 5.58 86.77 0.48 0.82 16 7 N -0.51 -6.15 5.03 -885.53 -4.45 -10.61 16 8 C 0.02 0.33 4.23 86.30 0.36 0.70 16 9 C 0.13 2.73 3.24 30.59 0.10 2.83 16 10 H 0.10 2.15 7.49 -2.39 -0.02 2.14 16 11 O -0.55 -12.53 13.17 -144.32 -1.90 -14.43 16 12 C 0.03 0.76 4.36 71.98 0.31 1.07 16 13 O -0.33 -12.46 10.09 -85.24 -0.86 -13.32 16 14 C 0.00 0.02 6.71 22.79 0.15 0.17 16 15 C -0.18 -8.06 8.96 22.11 0.20 -7.86 16 16 C -0.16 -8.22 8.64 22.48 0.19 -8.02 16 17 C 0.05 2.89 5.57 -21.28 -0.12 2.78 16 18 C -0.50 -27.03 9.04 23.40 0.21 -26.82 16 19 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 20 C 0.03 1.69 5.13 85.24 0.44 2.12 16 21 N -0.83 -43.44 10.96 21.82 0.24 -43.20 16 22 Si 0.98 38.32 29.60 68.60 2.03 40.35 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 26 C -0.20 -10.19 9.74 22.49 0.22 -9.97 16 27 C -0.12 -5.62 9.92 22.11 0.22 -5.40 16 28 C 0.03 0.31 6.24 86.65 0.54 0.85 16 29 H 0.13 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.57 8.02 -2.38 -0.02 0.55 16 31 H 0.05 0.60 7.62 -2.39 -0.02 0.58 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.19 8.03 -2.39 -0.02 1.18 16 34 H 0.05 0.74 7.85 -2.39 -0.02 0.72 16 35 H 0.38 6.38 9.04 -74.06 -0.67 5.71 16 36 H 0.06 1.63 7.63 -2.39 -0.02 1.61 16 37 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 38 H 0.12 4.64 6.27 -2.91 -0.02 4.63 16 39 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 40 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 41 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 42 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.13 0.85 8.10 -2.39 -0.02 0.83 16 44 H 0.08 0.70 7.23 -2.39 -0.02 0.69 16 Total: -1.00 -67.35 374.77 1.32 -66.03 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.37 Total: 26.42 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 4.76 Total: -40.83 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -3.84 Total: -62.99 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -2.76 Total: -27.75 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.76 Total: -1.24 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -67.35 1.32 -66.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615645946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.431 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds