Wall clock time and date at job start Tue Mar 31 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42108 * 108.57530 * 2 1 4 4 O 1.42095 * 108.57631 * 228.97688 * 2 1 3 5 5 C 1.81394 * 101.92232 * 114.48751 * 2 1 3 6 6 C 1.53000 * 109.47073 * 180.02562 * 5 2 1 7 7 O 1.42896 * 109.47344 * 180.02562 * 6 5 2 8 8 C 1.42902 * 114.00090 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46979 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47373 * 64.99873 * 9 8 7 11 11 C 1.34770 * 120.00007 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00458 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00453 * 180.27639 * 13 11 10 15 15 C 1.52999 * 109.47238 * 178.20984 * 14 13 11 16 16 C 1.50706 * 115.55242 * 65.12157 * 15 14 13 17 17 H 1.08004 * 119.99710 * 265.41242 * 16 15 14 18 18 C 1.37870 * 119.99833 * 85.41175 * 16 15 14 19 19 N 1.31511 * 120.00288 * 353.55860 * 18 16 15 20 20 Si 1.86798 * 120.00127 * 173.55930 * 18 16 15 21 21 H 1.48502 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47175 * 119.99719 * 20 18 16 23 23 H 1.48501 * 109.47364 * 240.00200 * 20 18 16 24 24 C 1.53004 * 117.49443 * 279.45489 * 15 14 13 25 25 C 1.53001 * 117.50051 * 210.79740 * 15 14 13 26 26 H 1.08995 * 109.47108 * 305.50570 * 1 2 3 27 27 H 1.09002 * 109.47511 * 65.51451 * 1 2 3 28 28 H 1.09007 * 109.46829 * 185.51080 * 1 2 3 29 29 H 1.09004 * 109.47333 * 60.00633 * 5 2 1 30 30 H 1.08996 * 109.47156 * 300.00003 * 5 2 1 31 31 H 1.08999 * 109.47260 * 59.99563 * 6 5 2 32 32 H 1.09002 * 109.47475 * 300.00359 * 6 5 2 33 33 H 1.08996 * 109.47057 * 60.00105 * 8 7 6 34 34 H 1.08998 * 109.47097 * 299.99600 * 8 7 6 35 35 H 1.09001 * 109.47005 * 304.99686 * 9 8 7 36 36 H 1.08998 * 109.46862 * 185.00491 * 9 8 7 37 37 H 0.97005 * 119.99716 * 359.97438 * 10 9 8 38 38 H 0.97005 * 119.99265 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46765 * 298.20448 * 14 13 11 40 40 H 1.08998 * 109.47048 * 58.20610 * 14 13 11 41 41 H 0.97003 * 120.00760 * 185.05299 * 19 18 16 42 42 H 1.08989 * 117.50087 * 359.97438 * 24 15 14 43 43 H 1.09005 * 117.49510 * 145.02428 * 24 15 14 44 44 H 1.09001 * 117.49885 * 214.98054 * 25 15 14 45 45 H 1.08999 * 117.49630 * 359.96996 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8184 1.7983 7 8 4.0008 -1.3984 3.0705 8 6 5.3982 -1.5213 3.3430 9 6 5.5951 -2.1515 4.7233 10 7 5.0803 -3.5231 4.7119 11 6 5.1474 -4.2773 5.8267 12 8 5.6356 -3.8196 6.8419 13 7 4.6734 -5.5389 5.8165 14 6 4.7408 -6.3567 7.0301 15 6 4.0999 -7.7200 6.7627 16 6 4.8083 -8.5843 5.7516 17 1 4.4963 -8.5719 4.7177 18 6 5.8546 -9.3906 6.1464 19 7 6.3174 -9.3129 7.3750 20 14 6.6150 -10.5935 4.9364 21 1 5.9190 -10.4868 3.6289 22 1 8.0540 -10.2732 4.7581 23 1 6.4768 -11.9763 5.4599 24 6 2.5734 -7.8062 6.8199 25 6 3.4176 -8.4226 7.9382 26 1 -0.3633 0.5968 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3633 -1.0230 0.0987 29 1 1.7612 -1.7370 1.6664 30 1 1.7611 -0.1171 2.4042 31 1 4.1328 0.1831 1.7472 32 1 4.1337 -1.4367 1.0093 33 1 5.8601 -0.5343 3.3246 34 1 5.8618 -2.1537 2.5858 35 1 5.0565 -1.5675 5.4695 36 1 6.6570 -2.1639 4.9688 37 1 4.6905 -3.8881 3.9020 38 1 4.2836 -5.9039 5.0067 39 1 5.7832 -6.4954 7.3173 40 1 4.2054 -5.8553 7.8363 41 1 7.0994 -9.8259 7.6321 42 1 2.0258 -6.8920 7.0484 43 1 2.0815 -8.4885 6.1265 44 1 3.4808 -9.5100 7.9800 45 1 3.4258 -7.9138 8.9021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797465341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:32 Heat of formation + Delta-G solvation = -121.063696 kcal Electronic energy + Delta-G solvation = -26152.008903 eV Core-core repulsion = 22105.342221 eV Total energy + Delta-G solvation = -4046.666682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.47007 -38.45358 -37.50586 -36.75868 -36.55552 -34.60970 -33.21541 -32.27364 -31.95821 -30.17264 -29.12072 -26.09431 -25.04367 -23.87725 -22.59467 -21.19692 -20.30091 -19.39653 -19.37004 -17.82148 -17.72211 -17.05412 -16.65467 -16.40234 -16.36280 -16.11815 -15.48333 -15.01692 -14.73888 -14.57869 -14.27603 -13.89417 -13.82258 -13.75875 -13.51610 -13.33444 -12.88578 -12.63336 -12.60436 -12.50741 -12.27867 -12.05899 -11.82609 -11.64605 -11.57119 -11.43118 -11.16899 -11.02139 -10.90378 -10.52006 -10.26318 -10.10360 -9.72259 -9.49758 -8.95757 -8.81755 -8.49465 -8.24083 -7.94070 -6.07259 -4.15765 -0.62322 2.15758 2.85956 3.23919 3.24991 3.33941 3.35855 3.43619 3.46291 3.84081 4.09943 4.12889 4.23876 4.35375 4.42858 4.69238 4.77381 4.80789 4.95569 5.01411 5.07908 5.09760 5.18399 5.21061 5.38008 5.61549 5.82053 6.04722 6.35661 6.48645 6.61549 6.66418 6.70438 6.80800 6.87554 7.09907 7.35988 7.43186 7.48816 7.62912 7.82051 8.35056 8.69612 8.85250 9.23891 9.50921 11.00636 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.002081 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.311306 B =13450.463021 C =13882.047731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.429 3.571 3 O -0.937 6.937 4 O -0.935 6.935 5 C -0.618 4.618 6 C 0.074 3.926 7 O -0.374 6.374 8 C 0.046 3.954 9 C 0.145 3.855 10 N -0.751 5.751 11 C 0.698 3.302 12 O -0.606 6.606 13 N -0.720 5.720 14 C 0.182 3.818 15 C 0.028 3.972 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.396 0.604 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 18.913 -13.765 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.609 3.391 3 O -0.935 6.935 4 O -0.932 6.932 5 C -0.745 4.745 6 C -0.004 4.004 7 O -0.293 6.293 8 C -0.031 4.031 9 C 0.020 3.980 10 N -0.409 5.409 11 C 0.398 3.602 12 O -0.486 6.486 13 N -0.372 5.372 14 C 0.058 3.942 15 C 0.027 3.973 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.229 0.771 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.037 19.422 -13.158 25.140 hybrid contribution -0.337 -1.286 -0.793 1.548 sum -9.373 18.136 -13.950 24.726 Atomic orbital electron populations 1.30229 1.25946 1.11982 1.12045 1.07613 0.78653 0.75692 0.77108 1.93619 1.79172 1.34380 1.86295 1.93628 1.79103 1.66995 1.53512 1.30502 1.04932 1.15298 1.23783 1.21979 0.91307 0.99062 0.88010 1.87991 1.24156 1.82808 1.34389 1.22928 0.82072 1.00589 0.97469 1.21090 0.99852 0.82073 0.94957 1.44994 1.68063 1.14189 1.13607 1.16030 0.79475 0.81449 0.83275 1.90869 1.52180 1.73306 1.32203 1.45129 1.64175 1.11575 1.16350 1.20844 1.01404 0.88812 0.83106 1.19051 0.88085 0.92437 0.97713 1.20370 1.16701 1.22927 0.93676 0.92196 1.24989 0.96686 0.96477 0.94947 1.69983 1.22757 1.41023 1.17245 0.86577 0.79021 0.81263 0.81346 1.19747 1.21069 1.20971 1.23016 0.96379 1.01388 1.04008 1.22492 1.04513 0.99523 0.92082 0.85112 0.84984 0.85009 0.83924 0.84096 0.91548 0.91436 0.91255 0.92006 0.91032 0.90096 0.77052 0.77107 0.91211 0.94766 0.92897 0.91662 0.90422 0.89830 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.13 10.62 101.05 1.07 -0.06 16 2 S 2.43 11.81 5.36 -107.50 -0.58 11.24 16 3 O -0.94 -8.06 18.10 -57.83 -1.05 -9.11 16 4 O -0.94 -8.34 18.10 -57.83 -1.05 -9.39 16 5 C -0.62 -2.78 6.17 37.16 0.23 -2.55 16 6 C 0.07 0.53 5.95 37.16 0.22 0.75 16 7 O -0.37 -3.56 10.29 -35.23 -0.36 -3.92 16 8 C 0.05 0.40 6.07 37.16 0.23 0.62 16 9 C 0.15 1.73 6.06 -4.04 -0.02 1.71 16 10 N -0.75 -10.79 5.51 -65.23 -0.36 -11.15 16 11 C 0.70 13.55 8.57 -86.92 -0.74 12.81 16 12 O -0.61 -14.13 16.34 5.29 0.09 -14.04 16 13 N -0.72 -14.27 5.48 -65.23 -0.36 -14.62 16 14 C 0.18 4.21 5.50 -4.04 -0.02 4.18 16 15 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 16 C -0.50 -12.82 8.63 -34.44 -0.30 -13.11 16 17 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 18 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 19 N -0.87 -24.34 12.91 55.43 0.72 -23.62 16 20 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 25 C -0.15 -3.38 9.42 -26.69 -0.25 -3.63 16 26 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.13 0.05 8.14 -51.92 -0.42 -0.37 16 29 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 4.80 8.49 -40.82 -0.35 4.45 16 38 H 0.40 7.10 8.38 -40.82 -0.34 6.76 16 39 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 40 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 42 H 0.06 1.25 8.14 -51.94 -0.42 0.82 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -37.84 398.03 -9.56 -47.39 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.42 Total: 7.32 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.17 Total: -1.63 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.00 Total: -49.40 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -2.37 Total: -36.45 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 11.81 SS G_CDS: -0.58 Total: 11.24 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.84 -9.56 -47.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797465341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.671 kcal (2) G-P(sol) polarization free energy of solvation -37.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds