Wall clock time and date at job start Tue Mar 31 2020 18:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42108 * 108.57530 * 2 1 4 4 O 1.42095 * 108.57631 * 228.97688 * 2 1 3 5 5 C 1.81394 * 101.92232 * 114.48751 * 2 1 3 6 6 C 1.53000 * 109.47073 * 180.02562 * 5 2 1 7 7 O 1.42896 * 109.47344 * 180.02562 * 6 5 2 8 8 C 1.42902 * 114.00090 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46979 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47373 * 64.99873 * 9 8 7 11 11 C 1.34770 * 120.00007 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00458 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00453 * 180.27639 * 13 11 10 15 15 C 1.52999 * 109.47238 * 178.20984 * 14 13 11 16 16 C 1.50706 * 115.55242 * 65.12157 * 15 14 13 17 17 H 1.08004 * 119.99710 * 265.41242 * 16 15 14 18 18 C 1.37870 * 119.99833 * 85.41175 * 16 15 14 19 19 N 1.31511 * 120.00288 * 353.55860 * 18 16 15 20 20 Si 1.86798 * 120.00127 * 173.55930 * 18 16 15 21 21 H 1.48502 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47175 * 119.99719 * 20 18 16 23 23 H 1.48501 * 109.47364 * 240.00200 * 20 18 16 24 24 C 1.53004 * 117.49443 * 279.45489 * 15 14 13 25 25 C 1.53001 * 117.50051 * 210.79740 * 15 14 13 26 26 H 1.08995 * 109.47108 * 305.50570 * 1 2 3 27 27 H 1.09002 * 109.47511 * 65.51451 * 1 2 3 28 28 H 1.09007 * 109.46829 * 185.51080 * 1 2 3 29 29 H 1.09004 * 109.47333 * 60.00633 * 5 2 1 30 30 H 1.08996 * 109.47156 * 300.00003 * 5 2 1 31 31 H 1.08999 * 109.47260 * 59.99563 * 6 5 2 32 32 H 1.09002 * 109.47475 * 300.00359 * 6 5 2 33 33 H 1.08996 * 109.47057 * 60.00105 * 8 7 6 34 34 H 1.08998 * 109.47097 * 299.99600 * 8 7 6 35 35 H 1.09001 * 109.47005 * 304.99686 * 9 8 7 36 36 H 1.08998 * 109.46862 * 185.00491 * 9 8 7 37 37 H 0.97005 * 119.99716 * 359.97438 * 10 9 8 38 38 H 0.97005 * 119.99265 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46765 * 298.20448 * 14 13 11 40 40 H 1.08998 * 109.47048 * 58.20610 * 14 13 11 41 41 H 0.97003 * 120.00760 * 185.05299 * 19 18 16 42 42 H 1.08989 * 117.50087 * 359.97438 * 24 15 14 43 43 H 1.09005 * 117.49510 * 145.02428 * 24 15 14 44 44 H 1.09001 * 117.49885 * 214.98054 * 25 15 14 45 45 H 1.08999 * 117.49630 * 359.96996 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8184 1.7983 7 8 4.0008 -1.3984 3.0705 8 6 5.3982 -1.5213 3.3430 9 6 5.5951 -2.1515 4.7233 10 7 5.0803 -3.5231 4.7119 11 6 5.1474 -4.2773 5.8267 12 8 5.6356 -3.8196 6.8419 13 7 4.6734 -5.5389 5.8165 14 6 4.7408 -6.3567 7.0301 15 6 4.0999 -7.7200 6.7627 16 6 4.8083 -8.5843 5.7516 17 1 4.4963 -8.5719 4.7177 18 6 5.8546 -9.3906 6.1464 19 7 6.3174 -9.3129 7.3750 20 14 6.6150 -10.5935 4.9364 21 1 5.9190 -10.4868 3.6289 22 1 8.0540 -10.2732 4.7581 23 1 6.4768 -11.9763 5.4599 24 6 2.5734 -7.8062 6.8199 25 6 3.4176 -8.4226 7.9382 26 1 -0.3633 0.5968 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3633 -1.0230 0.0987 29 1 1.7612 -1.7370 1.6664 30 1 1.7611 -0.1171 2.4042 31 1 4.1328 0.1831 1.7472 32 1 4.1337 -1.4367 1.0093 33 1 5.8601 -0.5343 3.3246 34 1 5.8618 -2.1537 2.5858 35 1 5.0565 -1.5675 5.4695 36 1 6.6570 -2.1639 4.9688 37 1 4.6905 -3.8881 3.9020 38 1 4.2836 -5.9039 5.0067 39 1 5.7832 -6.4954 7.3173 40 1 4.2054 -5.8553 7.8363 41 1 7.0994 -9.8259 7.6321 42 1 2.0258 -6.8920 7.0484 43 1 2.0815 -8.4885 6.1265 44 1 3.4808 -9.5100 7.9800 45 1 3.4258 -7.9138 8.9021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797465341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:31 Heat of formation + Delta-G solvation = -152.319032 kcal Electronic energy + Delta-G solvation = -26153.364236 eV Core-core repulsion = 22105.342221 eV Total energy + Delta-G solvation = -4048.022015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93685 -39.23809 -38.49699 -38.01682 -37.06895 -35.79467 -34.90696 -33.95195 -32.85762 -30.42983 -30.04890 -27.89424 -26.85325 -24.35710 -23.55404 -22.93478 -21.80392 -21.21801 -19.80870 -19.27581 -18.35065 -18.07468 -17.61288 -17.17776 -16.99021 -16.96296 -16.66413 -16.49758 -16.29423 -15.74788 -15.61727 -15.05621 -15.01011 -14.40089 -14.35036 -14.04951 -13.95722 -13.89086 -13.51084 -13.38813 -13.14412 -13.04809 -12.93951 -12.91866 -12.82897 -12.57533 -12.32334 -12.31622 -12.02395 -12.00126 -11.56963 -11.50160 -11.27502 -10.83772 -10.69069 -10.45400 -10.26975 -10.02395 -9.55386 -8.08330 -6.21340 -0.97209 1.41938 1.45624 1.54843 1.85431 1.87317 2.26687 2.39847 2.43622 2.94932 3.12849 3.19912 3.37105 3.61902 3.66312 3.83295 3.99701 4.14467 4.20526 4.26707 4.27018 4.27679 4.45961 4.58199 4.58568 4.66031 4.68134 4.76402 4.80948 4.88434 5.01404 5.02654 5.06047 5.29267 5.55058 5.61160 5.63811 5.73961 5.80777 6.07582 6.17827 6.38763 6.85989 7.26485 7.48030 7.71322 8.99453 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.002081 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.311306 B =13450.463021 C =13882.047731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.438 3.562 3 O -0.983 6.983 4 O -0.984 6.984 5 C -0.612 4.612 6 C 0.057 3.943 7 O -0.391 6.391 8 C 0.052 3.948 9 C 0.141 3.859 10 N -0.731 5.731 11 C 0.695 3.305 12 O -0.648 6.648 13 N -0.715 5.715 14 C 0.199 3.801 15 C 0.005 3.995 16 C -0.502 4.502 17 H 0.064 0.936 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.285 1.285 24 C -0.175 4.175 25 C -0.160 4.160 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.410 0.590 38 H 0.406 0.594 39 H 0.025 0.975 40 H 0.032 0.968 41 H 0.258 0.742 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 19.474 -15.439 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.623 3.377 3 O -0.980 6.980 4 O -0.981 6.981 5 C -0.740 4.740 6 C -0.020 4.020 7 O -0.311 6.311 8 C -0.025 4.025 9 C 0.016 3.984 10 N -0.388 5.388 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.369 5.369 14 C 0.074 3.926 15 C 0.005 3.995 16 C -0.540 4.540 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.546 5.546 20 Si 0.777 3.223 21 H -0.184 1.184 22 H -0.215 1.215 23 H -0.212 1.212 24 C -0.212 4.212 25 C -0.198 4.198 26 H 0.172 0.828 27 H 0.158 0.842 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.246 0.754 38 H 0.242 0.758 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.021 20.006 -14.917 27.280 hybrid contribution 0.202 -1.402 -0.261 1.440 sum -10.820 18.604 -15.177 26.335 Atomic orbital electron populations 1.30069 1.21026 1.14045 1.13605 1.07054 0.80181 0.73973 0.76447 1.93559 1.81193 1.36355 1.86877 1.93564 1.81194 1.67710 1.55619 1.30447 1.03478 1.16565 1.23539 1.22251 0.93239 0.99430 0.87097 1.87947 1.24337 1.83236 1.35613 1.22892 0.82365 1.01773 0.95464 1.21268 0.99479 0.80529 0.97074 1.44888 1.66869 1.14602 1.12483 1.16214 0.79048 0.81413 0.83899 1.90838 1.53968 1.74104 1.34221 1.44903 1.64519 1.11625 1.15813 1.20395 0.98549 0.89290 0.84369 1.19061 0.90145 0.92327 0.98003 1.20688 1.16413 1.22588 0.94265 0.91746 1.25718 0.97526 0.98155 0.96369 1.70112 1.23319 1.42197 1.19005 0.85626 0.77898 0.78951 0.79840 1.18444 1.21497 1.21152 1.23000 0.94389 1.01818 1.01967 1.22439 1.06062 0.98472 0.92844 0.82775 0.84211 0.82921 0.82359 0.82281 0.90910 0.91126 0.88893 0.90702 0.92128 0.90247 0.75427 0.75850 0.95621 0.95019 0.93266 0.89364 0.89447 0.91755 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.16 10.62 113.37 1.20 1.04 16 2 S 2.44 20.79 5.36 -56.49 -0.30 20.49 16 3 O -0.98 -16.56 18.10 -127.37 -2.31 -18.86 16 4 O -0.98 -17.25 18.10 -127.37 -2.30 -19.56 16 5 C -0.61 -4.13 6.17 71.98 0.44 -3.69 16 6 C 0.06 0.71 5.95 71.98 0.43 1.14 16 7 O -0.39 -6.61 10.29 -148.98 -1.53 -8.15 16 8 C 0.05 0.78 6.07 71.98 0.44 1.22 16 9 C 0.14 3.20 6.06 86.38 0.52 3.72 16 10 N -0.73 -20.08 5.51 -478.54 -2.64 -22.71 16 11 C 0.69 26.72 8.57 179.06 1.53 28.25 16 12 O -0.65 -30.64 16.34 -3.99 -0.07 -30.70 16 13 N -0.72 -27.93 5.48 -478.54 -2.62 -30.55 16 14 C 0.20 9.29 5.50 86.38 0.48 9.76 16 15 C 0.01 0.25 1.38 -52.92 -0.07 0.18 16 16 C -0.50 -25.46 8.63 25.60 0.22 -25.23 16 17 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 18 C 0.02 1.21 5.39 84.65 0.46 1.67 16 19 N -0.91 -51.61 12.91 21.44 0.28 -51.34 16 20 Si 0.95 42.13 29.55 68.60 2.03 44.15 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.17 -6.85 9.96 30.62 0.30 -6.55 16 25 C -0.16 -7.27 9.42 30.62 0.29 -6.98 16 26 H 0.15 -0.59 8.14 -2.39 -0.02 -0.60 16 27 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 9.08 8.49 -92.70 -0.79 8.30 16 38 H 0.41 13.96 8.38 -92.70 -0.78 13.19 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 41 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 42 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 44 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 45 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -83.22 398.03 -3.79 -87.01 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.57 Total: 25.68 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.24 Total: 4.54 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -4.98 Total: -104.60 kcal Atomic # 8 Polarization: -71.06 SS G_CDS: -6.21 Total: -77.27 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 20.79 SS G_CDS: -0.30 Total: 20.49 kcal Total: -83.22 -3.79 -87.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797465341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.310 kcal (2) G-P(sol) polarization free energy of solvation -83.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds