Wall clock time and date at job start Tue Mar 31 2020 17:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42899 * 114.00173 * 2 1
4 4 C 1.53002 * 109.47190 * 179.97438 * 3 2 1
5 5 N 1.46505 * 109.46890 * 64.68684 * 4 3 2
6 6 C 1.46495 * 119.99901 * 82.27428 * 5 4 3
7 7 C 1.50699 * 109.47082 * 274.26312 * 6 5 4
8 8 H 1.08004 * 120.00138 * 354.92763 * 7 6 5
9 9 C 1.37877 * 120.00190 * 174.92990 * 7 6 5
10 10 N 1.31513 * 120.00496 * 185.09837 * 9 7 6
11 11 Si 1.86803 * 119.99972 * 5.09573 * 9 7 6
12 12 H 1.48498 * 109.47172 * 84.91088 * 11 9 7
13 13 H 1.48500 * 109.47240 * 204.91302 * 11 9 7
14 14 H 1.48497 * 109.46931 * 324.91109 * 11 9 7
15 15 S 1.65601 * 119.99862 * 262.27016 * 5 4 3
16 16 O 1.42102 * 106.40131 * 23.54312 * 15 5 4
17 17 O 1.42097 * 106.40333 * 156.46271 * 15 5 4
18 18 N 1.65596 * 107.22034 * 270.00334 * 15 5 4
19 19 C 1.46495 * 120.00082 * 64.99992 * 18 15 5
20 20 C 1.53003 * 109.47366 * 165.00324 * 19 18 15
21 21 H 1.08997 * 109.70409 * 59.99685 * 20 19 18
22 22 C 1.53496 * 109.71101 * 180.58317 * 20 19 18
23 23 C 1.53240 * 108.17452 * 182.03057 * 22 20 19
24 24 C 1.50445 * 109.46853 * 313.25362 * 23 22 20
25 25 C 1.30679 * 122.49704 * 17.45391 * 24 23 22
26 26 O 1.35138 * 123.34532 * 359.54601 * 25 24 23
27 27 H 1.08998 * 109.47272 * 59.99925 * 1 2 3
28 28 H 1.08996 * 109.47253 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.46674 * 299.99945 * 1 2 3
30 30 H 1.08997 * 109.46878 * 60.00514 * 3 2 1
31 31 H 1.08993 * 109.47208 * 300.00036 * 3 2 1
32 32 H 1.08998 * 109.47038 * 304.68818 * 4 3 2
33 33 H 1.09002 * 109.47287 * 184.68318 * 4 3 2
34 34 H 1.09007 * 109.47231 * 154.26652 * 6 5 4
35 35 H 1.08999 * 109.47405 * 34.26519 * 6 5 4
36 36 H 0.96993 * 120.00795 * 179.97438 * 10 9 7
37 37 H 0.97006 * 120.00006 * 245.00220 * 18 15 5
38 38 H 1.09005 * 109.47592 * 284.99888 * 19 18 15
39 39 H 1.08997 * 109.47467 * 44.99987 * 19 18 15
40 40 H 1.09000 * 109.72616 * 301.75062 * 22 20 19
41 41 H 1.09001 * 109.72724 * 62.41503 * 22 20 19
42 42 H 1.08995 * 109.48556 * 193.23589 * 23 22 20
43 43 H 1.09003 * 109.44046 * 73.23739 * 23 22 20
44 44 H 1.07999 * 118.75071 * 197.43223 * 24 23 22
45 45 H 1.07997 * 118.32745 * 179.57238 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 7 3.9761 0.5571 -1.2477
6 6 4.1242 1.3646 -2.4610
7 6 2.7956 1.4607 -3.1657
8 1 1.9472 0.9033 -2.7970
9 6 2.6631 2.2603 -4.2811
10 7 1.4823 2.4235 -4.8367
11 14 4.1607 3.1119 -5.0031
12 1 4.8618 2.1829 -5.9253
13 1 3.7304 4.3206 -5.7508
14 1 5.0805 3.5092 -3.9071
15 16 4.3069 -1.0651 -1.2872
16 8 3.5787 -1.6493 -0.2158
17 8 4.1587 -1.4720 -2.6406
18 7 5.9106 -1.2476 -0.9170
19 6 6.4020 -0.8783 0.4128
20 6 7.7940 -1.4764 0.6264
21 1 8.4784 -1.0939 -0.1307
22 6 8.3081 -1.1049 2.0241
23 6 9.7211 -1.6767 2.1812
24 6 9.7386 -3.1062 1.7124
25 6 8.7977 -3.6091 0.9578
26 8 7.7250 -2.9024 0.5380
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3632 0.5138 0.8900
30 1 1.6887 1.8463 0.8900
31 1 1.6886 1.8463 -0.8899
32 1 3.8511 0.5730 0.8459
33 1 3.9786 2.1769 0.0846
34 1 4.8532 0.8963 -3.1224
35 1 4.4663 2.3641 -2.1927
36 1 1.3890 2.9863 -5.6212
37 1 6.5246 -1.5990 -1.5807
38 1 6.4572 0.2075 0.4912
39 1 5.7208 -1.2632 1.1717
40 1 8.3356 -0.0204 2.1298
41 1 7.6527 -1.5325 2.7829
42 1 10.0160 -1.6345 3.2297
43 1 10.4186 -1.0897 1.5836
44 1 10.5601 -3.7407 2.0105
45 1 8.8814 -4.6422 0.6545
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000800122074.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:41:18
Heat of formation + Delta-G solvation = -137.489216 kcal
Electronic energy + Delta-G solvation = -28540.912725 eV
Core-core repulsion = 24493.533779 eV
Total energy + Delta-G solvation = -4047.378946 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 334.144 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.34690 -37.51666 -36.45013 -35.49322 -35.27030 -34.97643 -34.16018 -32.42640
-31.47926 -29.56617 -27.16413 -27.13053 -25.56776 -24.05353 -22.89536 -22.33061
-21.55917 -19.43092 -18.70411 -17.38220 -17.12132 -16.95045 -16.55353 -16.32360
-15.97803 -15.75810 -15.03373 -14.88718 -14.58726 -14.38239 -14.24611 -13.94758
-13.76518 -13.32274 -13.19781 -13.11808 -12.64306 -12.45181 -12.34606 -12.33786
-11.88584 -11.60792 -11.35417 -11.23382 -11.19922 -11.14504 -11.06215 -10.94386
-10.72493 -10.56452 -10.49234 -10.38011 -10.15231 -9.50634 -9.32712 -8.92992
-8.62664 -8.55689 -8.10433 -6.06560 -4.04029 1.27929 2.07836 3.15736
3.26994 3.32106 3.35108 3.56082 4.23241 4.34294 4.39134 4.43058
4.47550 4.64217 4.82869 4.95777 5.05830 5.10373 5.25715 5.28061
5.32699 5.38878 5.48425 5.56071 5.59114 5.67028 5.69464 5.81179
5.88274 5.95057 5.98424 6.05250 6.09279 6.22136 6.29013 6.31444
6.64139 6.72628 7.06414 7.18480 7.39962 7.48412 7.60767 7.85495
8.52461 9.02468 9.53254 11.06700
Molecular weight = 334.14amu
Principal moments of inertia in cm(-1)
A = 0.013625 B = 0.003943 C = 0.003431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2054.572714 B = 7100.122293 C = 8159.723641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.371 6.371
3 C 0.034 3.966
4 C 0.140 3.860
5 N -0.984 5.984
6 C 0.226 3.774
7 C -0.526 4.526
8 H 0.083 0.917
9 C 0.072 3.928
10 N -0.896 5.896
11 Si 0.870 3.130
12 H -0.273 1.273
13 H -0.286 1.286
14 H -0.266 1.266
15 S 2.781 3.219
16 O -0.968 6.968
17 O -0.966 6.966
18 N -1.134 6.134
19 C 0.129 3.871
20 C 0.083 3.917
21 H 0.079 0.921
22 C -0.156 4.156
23 C -0.079 4.079
24 C -0.291 4.291
25 C 0.060 3.940
26 O -0.312 6.312
27 H 0.043 0.957
28 H 0.077 0.923
29 H 0.030 0.970
30 H 0.040 0.960
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.028 0.972
35 H 0.033 0.967
36 H 0.264 0.736
37 H 0.413 0.587
38 H 0.081 0.919
39 H 0.086 0.914
40 H 0.085 0.915
41 H 0.080 0.920
42 H 0.075 0.925
43 H 0.069 0.931
44 H 0.118 0.882
45 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.208 -4.200 15.326 21.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.290 6.290
3 C -0.044 4.044
4 C 0.013 3.987
5 N -0.825 5.825
6 C 0.102 3.898
7 C -0.565 4.565
8 H 0.101 0.899
9 C -0.130 4.130
10 N -0.534 5.534
11 Si 0.697 3.303
12 H -0.198 1.198
13 H -0.212 1.212
14 H -0.191 1.191
15 S 2.789 3.211
16 O -0.951 6.951
17 O -0.949 6.949
18 N -0.893 5.893
19 C 0.002 3.998
20 C 0.026 3.974
21 H 0.097 0.903
22 C -0.194 4.194
23 C -0.116 4.116
24 C -0.311 4.311
25 C -0.004 4.004
26 O -0.225 6.225
27 H 0.062 0.938
28 H 0.096 0.904
29 H 0.048 0.952
30 H 0.058 0.942
31 H 0.100 0.900
32 H 0.091 0.909
33 H 0.102 0.898
34 H 0.045 0.955
35 H 0.051 0.949
36 H 0.074 0.926
37 H 0.245 0.755
38 H 0.099 0.901
39 H 0.105 0.895
40 H 0.103 0.897
41 H 0.099 0.901
42 H 0.094 0.906
43 H 0.087 0.913
44 H 0.136 0.864
45 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 13.292 -4.957 15.035 20.671
hybrid contribution 1.291 1.010 -0.664 1.768
sum 14.583 -3.947 14.371 20.851
Atomic orbital electron populations
1.22646 0.82262 1.01950 0.99444 1.88024 1.18589 1.27081 1.95282
1.23131 0.94432 0.85757 1.01086 1.21097 0.93243 0.98901 0.85474
1.57529 1.80393 1.28169 1.16380 1.19427 0.98139 0.90929 0.81285
1.21441 0.96012 1.27705 1.11316 0.89913 1.24876 0.95555 0.96086
0.96494 1.69891 1.22412 1.39030 1.22102 0.86990 0.83802 0.79446
0.80044 1.19835 1.21205 1.19136 1.02105 0.72414 0.73216 0.73408
1.93593 1.69160 1.75250 1.57081 1.93632 1.84659 1.81232 1.35425
1.56290 1.31046 1.81422 1.20509 1.21266 0.94236 0.98952 0.85382
1.22740 0.97488 0.79656 0.97535 0.90305 1.22259 0.97722 1.02442
0.96994 1.20311 0.96252 0.93486 1.01598 1.22486 1.03040 0.99029
1.06509 1.22068 0.87060 0.96513 0.94715 1.86028 1.37884 1.18850
1.79782 0.93814 0.90430 0.95152 0.94171 0.89974 0.90925 0.89772
0.95458 0.94925 0.92623 0.75451 0.90058 0.89534 0.89671 0.90133
0.90604 0.91258 0.86361 0.82709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.58 11.01 101.05 1.11 1.70 16
2 O -0.37 -7.62 9.15 -51.52 -0.47 -8.09 16
3 C 0.03 0.62 5.99 37.16 0.22 0.85 16
4 C 0.14 2.29 5.84 -4.04 -0.02 2.26 16
5 N -0.98 -19.42 2.81 -115.66 -0.33 -19.74 16
6 C 0.23 5.13 4.19 -5.20 -0.02 5.11 16
7 C -0.53 -14.55 8.64 -34.44 -0.30 -14.85 16
8 H 0.08 2.55 7.42 -52.48 -0.39 2.16 16
9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
10 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16
11 Si 0.87 20.72 27.48 -169.99 -4.67 16.05 16
12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
14 H -0.27 -5.83 6.58 56.52 0.37 -5.46 16
15 S 2.78 55.66 6.05 -107.50 -0.65 55.01 16
16 O -0.97 -20.85 15.04 -64.37 -0.97 -21.82 16
17 O -0.97 -23.58 17.12 -57.17 -0.98 -24.56 16
18 N -1.13 -16.63 5.94 -10.61 -0.06 -16.70 16
19 C 0.13 1.48 5.96 -4.04 -0.02 1.46 16
20 C 0.08 0.84 2.94 -26.47 -0.08 0.76 16
21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
22 C -0.16 -1.24 5.55 -26.35 -0.15 -1.39 16
23 C -0.08 -0.60 6.23 -27.88 -0.17 -0.77 16
24 C -0.29 -2.46 9.97 -36.06 -0.36 -2.82 16
25 C 0.06 0.57 10.88 29.10 0.32 0.89 16
26 O -0.31 -3.71 9.93 -17.11 -0.17 -3.88 16
27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.08 1.73 6.40 -51.93 -0.33 1.40 16
32 H 0.07 1.04 7.51 -51.93 -0.39 0.65 16
33 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16
34 H 0.03 0.63 7.18 -51.92 -0.37 0.26 16
35 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16
36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
37 H 0.41 5.52 8.65 -34.47 -0.30 5.22 16
38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
39 H 0.09 1.05 7.75 -51.93 -0.40 0.65 16
40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16
41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
45 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16
LS Contribution 376.72 15.07 5.68 5.68
Total: -1.00 -36.38 376.72 -8.62 -45.00
By element:
Atomic # 1 Polarization: 11.36 SS G_CDS: -7.20 Total: 4.16 kcal
Atomic # 6 Polarization: -5.29 SS G_CDS: 0.43 Total: -4.86 kcal
Atomic # 7 Polarization: -63.08 SS G_CDS: 0.39 Total: -62.70 kcal
Atomic # 8 Polarization: -55.76 SS G_CDS: -2.59 Total: -58.35 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal
Atomic # 16 Polarization: 55.66 SS G_CDS: -0.65 Total: 55.01 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -36.38 -8.62 -45.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000800122074.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.489 kcal
(2) G-P(sol) polarization free energy of solvation -36.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.489 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds