Wall clock time and date at job start Tue Mar 31 2020 17:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00107 * 2 1 4 4 C 1.52996 * 109.46952 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47315 * 66.19320 * 4 3 2 6 6 C 1.46503 * 120.00032 * 275.01562 * 5 4 3 7 7 C 1.50698 * 109.46815 * 281.08394 * 6 5 4 8 8 H 1.07997 * 120.00225 * 2.72985 * 7 6 5 9 9 C 1.37882 * 119.99968 * 182.72770 * 7 6 5 10 10 N 1.31509 * 119.99973 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99835 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47010 * 90.00306 * 11 9 7 13 13 H 1.48500 * 109.46878 * 209.99939 * 11 9 7 14 14 H 1.48500 * 109.47499 * 330.00010 * 11 9 7 15 15 S 1.65604 * 120.00044 * 95.01225 * 5 4 3 16 16 O 1.42105 * 106.40169 * 330.16902 * 15 5 4 17 17 O 1.42100 * 106.40226 * 197.25230 * 15 5 4 18 18 N 1.65592 * 107.22007 * 83.71223 * 15 5 4 19 19 C 1.46498 * 120.00080 * 65.29562 * 18 15 5 20 20 C 1.53004 * 109.47112 * 165.04292 * 19 18 15 21 21 H 1.09004 * 109.73356 * 304.39468 * 20 19 18 22 22 C 1.53499 * 109.71550 * 183.81025 * 20 19 18 23 23 C 1.53253 * 108.15921 * 177.91235 * 22 20 19 24 24 C 1.50440 * 109.44037 * 46.82662 * 23 22 20 25 25 C 1.30684 * 122.49631 * 342.49481 * 24 23 22 26 26 O 1.35134 * 123.34532 * 0.45858 * 25 24 23 27 27 H 1.09009 * 109.47000 * 299.99902 * 1 2 3 28 28 H 1.08994 * 109.47310 * 59.99387 * 1 2 3 29 29 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46893 * 60.00228 * 3 2 1 31 31 H 1.08996 * 109.46992 * 299.99840 * 3 2 1 32 32 H 1.09003 * 109.47757 * 306.19361 * 4 3 2 33 33 H 1.09002 * 109.47198 * 186.19117 * 4 3 2 34 34 H 1.08995 * 109.47394 * 41.08621 * 6 5 4 35 35 H 1.09001 * 109.47236 * 161.08709 * 6 5 4 36 36 H 0.97003 * 120.00014 * 180.02562 * 10 9 7 37 37 H 0.97005 * 119.99627 * 245.29969 * 18 15 5 38 38 H 1.09001 * 109.46936 * 45.04174 * 19 18 15 39 39 H 1.09005 * 109.47334 * 285.04132 * 19 18 15 40 40 H 1.09005 * 109.71893 * 58.24381 * 22 20 19 41 41 H 1.08995 * 109.76097 * 297.60303 * 22 20 19 42 42 H 1.08997 * 109.47410 * 286.83975 * 23 22 20 43 43 H 1.09000 * 109.47331 * 166.81938 * 23 22 20 44 44 H 1.07999 * 118.75045 * 162.51433 * 24 23 22 45 45 H 1.08001 * 118.32809 * 180.47768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9777 0.5905 -1.2646 6 6 4.0023 -0.8660 -1.4204 7 6 5.2297 -1.4227 -0.7461 8 1 5.8990 -0.7634 -0.2134 9 6 5.4982 -2.7736 -0.8093 10 7 4.6834 -3.5763 -1.4583 11 14 7.0193 -3.4636 0.0271 12 1 6.6857 -3.8478 1.4223 13 1 7.4932 -4.6590 -0.7156 14 1 8.0881 -2.4327 0.0396 15 16 4.4499 1.5653 -2.5173 16 8 3.7088 2.7709 -2.3889 17 8 4.4235 0.7576 -3.6862 18 7 6.0366 1.9619 -2.2587 19 6 7.0673 0.9215 -2.2970 20 6 8.4471 1.5742 -2.4030 21 1 8.4771 2.2325 -3.2712 22 6 9.5242 0.4890 -2.5392 23 6 10.8825 1.1812 -2.6952 24 6 11.0138 2.2654 -1.6606 25 6 9.9843 2.7527 -1.0198 26 8 8.7170 2.3270 -1.2171 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8501 0.5508 0.8285 33 1 3.9784 2.1744 0.1102 34 1 3.1106 -1.2954 -0.9637 35 1 4.0245 -1.1177 -2.4807 36 1 4.8721 -4.5268 -1.5025 37 1 6.2837 2.8831 -2.0819 38 1 6.9023 0.2782 -3.1613 39 1 7.0163 0.3257 -1.3856 40 1 9.3202 -0.1234 -3.4176 41 1 9.5308 -0.1376 -1.6475 42 1 10.9553 1.6185 -3.6910 43 1 11.6802 0.4509 -2.5596 44 1 11.9960 2.6560 -1.4392 45 1 10.1550 3.5358 -0.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800122075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:21 Heat of formation + Delta-G solvation = -146.905739 kcal Electronic energy + Delta-G solvation = -28781.153460 eV Core-core repulsion = 24733.366183 eV Total energy + Delta-G solvation = -4047.787277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08299 -37.67092 -36.62167 -35.35761 -35.16755 -35.02994 -33.90333 -32.52582 -31.24422 -29.42581 -26.92353 -26.65493 -25.61380 -23.78117 -22.79719 -22.52729 -21.68685 -19.05131 -18.65788 -17.35537 -17.05612 -16.63344 -16.41822 -16.12690 -15.78200 -15.62481 -15.55322 -14.84486 -14.55214 -14.39791 -14.09668 -13.89329 -13.50974 -13.36437 -12.94408 -12.67632 -12.44637 -12.31414 -12.26053 -11.97698 -11.83437 -11.64137 -11.60634 -11.40215 -11.16256 -11.06174 -10.88214 -10.81938 -10.69352 -10.56685 -10.38703 -10.34710 -9.99211 -9.72694 -9.23181 -8.98067 -8.41335 -8.41095 -7.95706 -6.02945 -4.08276 1.31740 2.27951 3.27857 3.35623 3.35777 3.40038 3.57716 4.18632 4.23332 4.41052 4.66606 4.75127 4.93111 5.09816 5.18850 5.25896 5.30478 5.34861 5.42841 5.49233 5.57727 5.60381 5.65625 5.71419 5.75378 5.82601 5.85611 5.90174 5.98344 6.07159 6.15381 6.31959 6.40295 6.42790 6.51347 6.65279 7.34007 7.54879 7.60019 7.61896 7.64025 7.82727 7.96624 8.27373 8.96223 9.55836 11.05014 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.005188 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.547646 B = 5395.680766 C = 7125.434724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.138 3.862 5 N -0.984 5.984 6 C 0.242 3.758 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.887 5.887 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 S 2.783 3.217 16 O -1.003 7.003 17 O -0.978 6.978 18 N -1.129 6.129 19 C 0.126 3.874 20 C 0.086 3.914 21 H 0.075 0.925 22 C -0.158 4.158 23 C -0.079 4.079 24 C -0.290 4.290 25 C 0.059 3.941 26 O -0.316 6.316 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.410 0.590 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 11.370 1.253 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.011 3.989 5 N -0.825 5.825 6 C 0.120 3.880 7 C -0.575 4.575 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.525 5.525 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 S 2.791 3.209 16 O -0.987 6.987 17 O -0.962 6.962 18 N -0.887 5.887 19 C 0.000 4.000 20 C 0.028 3.972 21 H 0.093 0.907 22 C -0.196 4.196 23 C -0.116 4.116 24 C -0.310 4.310 25 C -0.004 4.004 26 O -0.230 6.230 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.242 0.758 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.134 0.866 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.767 11.083 0.516 12.075 hybrid contribution 1.302 -0.035 0.835 1.547 sum 6.068 11.048 1.351 12.677 Atomic orbital electron populations 1.22695 0.82467 1.02376 0.99073 1.88107 1.18347 1.27094 1.95143 1.23118 0.95446 0.85139 0.99878 1.21037 0.91233 0.97949 0.88726 1.57621 1.78454 1.19627 1.26832 1.19325 0.98341 0.71566 0.98735 1.21551 1.08839 0.92820 1.34313 0.91965 1.24916 0.96550 0.96989 0.95283 1.69943 1.36780 1.04342 1.41424 0.86685 0.83401 0.78787 0.79627 1.20735 1.21260 1.19749 1.01812 0.72630 0.72352 0.74130 1.93541 1.69829 1.47668 1.87669 1.93576 1.86360 1.69804 1.46423 1.55925 1.25910 1.16668 1.90226 1.21489 0.83634 0.89367 1.05478 1.22773 0.95187 0.92782 0.86420 0.90688 1.22259 0.94554 0.98193 1.04583 1.20320 0.97197 0.96359 0.97738 1.22484 0.98739 1.04012 1.05716 1.21996 0.83271 0.96537 0.98633 1.85959 1.26366 1.68180 1.42455 0.94852 0.94639 0.89903 0.93294 0.93108 0.89041 0.90498 0.92805 0.93135 0.92751 0.75817 0.88439 0.88467 0.89506 0.89913 0.91394 0.90721 0.86566 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.87 9.04 -35.23 -0.32 -7.19 16 3 C 0.04 0.71 6.28 37.16 0.23 0.94 16 4 C 0.14 2.40 5.73 -4.04 -0.02 2.38 16 5 N -0.98 -20.15 2.84 -115.66 -0.33 -20.47 16 6 C 0.24 6.00 5.35 -5.19 -0.03 5.97 16 7 C -0.54 -13.66 8.53 -34.44 -0.29 -13.95 16 8 H 0.06 1.52 6.49 -52.49 -0.34 1.18 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 11 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 S 2.78 54.47 6.07 -107.50 -0.65 53.81 16 16 O -1.00 -20.06 17.17 -57.17 -0.98 -21.04 16 17 O -0.98 -22.54 16.00 -57.17 -0.91 -23.45 16 18 N -1.13 -18.26 6.02 -10.61 -0.06 -18.33 16 19 C 0.13 2.08 5.93 -4.04 -0.02 2.06 16 20 C 0.09 1.18 2.94 -26.47 -0.08 1.10 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.16 -2.03 5.54 -26.34 -0.15 -2.17 16 23 C -0.08 -0.87 6.23 -27.88 -0.17 -1.04 16 24 C -0.29 -3.17 9.97 -36.06 -0.36 -3.53 16 25 C 0.06 0.68 10.88 29.10 0.32 1.00 16 26 O -0.32 -4.41 9.86 -17.10 -0.17 -4.58 16 27 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.09 1.64 8.05 -51.93 -0.42 1.22 16 33 H 0.08 1.13 7.78 -51.93 -0.40 0.73 16 34 H 0.05 1.44 6.59 -51.93 -0.34 1.10 16 35 H 0.05 1.39 6.76 -51.93 -0.35 1.04 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.41 5.67 8.52 -34.46 -0.29 5.38 16 38 H 0.10 1.69 7.74 -51.93 -0.40 1.28 16 39 H 0.10 1.80 5.95 -51.93 -0.31 1.49 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -32.41 378.56 -8.63 -41.04 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.06 Total: 7.66 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.44 Total: -4.03 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 0.34 Total: -63.31 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -2.38 Total: -56.26 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 54.47 SS G_CDS: -0.65 Total: 53.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.41 -8.63 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800122075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.862 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds