Wall clock time and date at job start Tue Mar 31 2020 17:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00107 * 2 1 4 4 C 1.52996 * 109.46952 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47315 * 66.19320 * 4 3 2 6 6 C 1.46503 * 120.00032 * 275.01562 * 5 4 3 7 7 C 1.50698 * 109.46815 * 281.08394 * 6 5 4 8 8 H 1.07997 * 120.00225 * 2.72985 * 7 6 5 9 9 C 1.37882 * 119.99968 * 182.72770 * 7 6 5 10 10 N 1.31509 * 119.99973 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99835 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47010 * 90.00306 * 11 9 7 13 13 H 1.48500 * 109.46878 * 209.99939 * 11 9 7 14 14 H 1.48500 * 109.47499 * 330.00010 * 11 9 7 15 15 S 1.65604 * 120.00044 * 95.01225 * 5 4 3 16 16 O 1.42105 * 106.40169 * 330.16902 * 15 5 4 17 17 O 1.42100 * 106.40226 * 197.25230 * 15 5 4 18 18 N 1.65592 * 107.22007 * 83.71223 * 15 5 4 19 19 C 1.46498 * 120.00080 * 65.29562 * 18 15 5 20 20 C 1.53004 * 109.47112 * 165.04292 * 19 18 15 21 21 H 1.09004 * 109.73356 * 304.39468 * 20 19 18 22 22 C 1.53499 * 109.71550 * 183.81025 * 20 19 18 23 23 C 1.53253 * 108.15921 * 177.91235 * 22 20 19 24 24 C 1.50440 * 109.44037 * 46.82662 * 23 22 20 25 25 C 1.30684 * 122.49631 * 342.49481 * 24 23 22 26 26 O 1.35134 * 123.34532 * 0.45858 * 25 24 23 27 27 H 1.09009 * 109.47000 * 299.99902 * 1 2 3 28 28 H 1.08994 * 109.47310 * 59.99387 * 1 2 3 29 29 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46893 * 60.00228 * 3 2 1 31 31 H 1.08996 * 109.46992 * 299.99840 * 3 2 1 32 32 H 1.09003 * 109.47757 * 306.19361 * 4 3 2 33 33 H 1.09002 * 109.47198 * 186.19117 * 4 3 2 34 34 H 1.08995 * 109.47394 * 41.08621 * 6 5 4 35 35 H 1.09001 * 109.47236 * 161.08709 * 6 5 4 36 36 H 0.97003 * 120.00014 * 180.02562 * 10 9 7 37 37 H 0.97005 * 119.99627 * 245.29969 * 18 15 5 38 38 H 1.09001 * 109.46936 * 45.04174 * 19 18 15 39 39 H 1.09005 * 109.47334 * 285.04132 * 19 18 15 40 40 H 1.09005 * 109.71893 * 58.24381 * 22 20 19 41 41 H 1.08995 * 109.76097 * 297.60303 * 22 20 19 42 42 H 1.08997 * 109.47410 * 286.83975 * 23 22 20 43 43 H 1.09000 * 109.47331 * 166.81938 * 23 22 20 44 44 H 1.07999 * 118.75045 * 162.51433 * 24 23 22 45 45 H 1.08001 * 118.32809 * 180.47768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9777 0.5905 -1.2646 6 6 4.0023 -0.8660 -1.4204 7 6 5.2297 -1.4227 -0.7461 8 1 5.8990 -0.7634 -0.2134 9 6 5.4982 -2.7736 -0.8093 10 7 4.6834 -3.5763 -1.4583 11 14 7.0193 -3.4636 0.0271 12 1 6.6857 -3.8478 1.4223 13 1 7.4932 -4.6590 -0.7156 14 1 8.0881 -2.4327 0.0396 15 16 4.4499 1.5653 -2.5173 16 8 3.7088 2.7709 -2.3889 17 8 4.4235 0.7576 -3.6862 18 7 6.0366 1.9619 -2.2587 19 6 7.0673 0.9215 -2.2970 20 6 8.4471 1.5742 -2.4030 21 1 8.4771 2.2325 -3.2712 22 6 9.5242 0.4890 -2.5392 23 6 10.8825 1.1812 -2.6952 24 6 11.0138 2.2654 -1.6606 25 6 9.9843 2.7527 -1.0198 26 8 8.7170 2.3270 -1.2171 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8501 0.5508 0.8285 33 1 3.9784 2.1744 0.1102 34 1 3.1106 -1.2954 -0.9637 35 1 4.0245 -1.1177 -2.4807 36 1 4.8721 -4.5268 -1.5025 37 1 6.2837 2.8831 -2.0819 38 1 6.9023 0.2782 -3.1613 39 1 7.0163 0.3257 -1.3856 40 1 9.3202 -0.1234 -3.4176 41 1 9.5308 -0.1376 -1.6475 42 1 10.9553 1.6185 -3.6910 43 1 11.6802 0.4509 -2.5596 44 1 11.9960 2.6560 -1.4392 45 1 10.1550 3.5358 -0.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800122075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:20 Heat of formation + Delta-G solvation = -171.508330 kcal Electronic energy + Delta-G solvation = -28782.220308 eV Core-core repulsion = 24733.366183 eV Total energy + Delta-G solvation = -4048.854126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06439 -39.03932 -38.29261 -36.96622 -36.85770 -36.36978 -34.83155 -34.49276 -32.30019 -30.99629 -28.47183 -27.92960 -26.97617 -24.76308 -24.57178 -23.67952 -23.23336 -20.41614 -19.83400 -18.83435 -18.57760 -18.37563 -17.67639 -17.48077 -17.06928 -17.04232 -16.72672 -16.43033 -16.05078 -15.77811 -15.25316 -15.00232 -14.93026 -14.61047 -14.43297 -13.89335 -13.86974 -13.78227 -13.47746 -13.40316 -13.30651 -13.20793 -13.13513 -12.96579 -12.91116 -12.69205 -12.49250 -12.23035 -11.99706 -11.85383 -11.75852 -11.69962 -11.57554 -11.36275 -10.55337 -10.49072 -10.38343 -9.69136 -9.28328 -8.07889 -6.19733 -0.28255 1.44378 1.45255 1.46521 1.55840 1.99805 2.44833 2.47501 2.63273 3.01153 3.24530 3.43066 3.68473 3.77417 3.97014 4.00507 4.13652 4.23328 4.27881 4.41073 4.42352 4.51592 4.54323 4.57250 4.60569 4.66053 4.77994 4.82745 4.87044 4.94958 5.01634 5.02417 5.13978 5.22199 5.41283 5.52217 5.65832 5.70168 5.84358 5.95127 6.20992 6.23377 6.42124 6.69759 6.92590 7.48541 9.00562 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.005188 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.547646 B = 5395.680766 C = 7125.434724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.041 3.959 4 C 0.128 3.872 5 N -0.989 5.989 6 C 0.262 3.738 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.013 3.987 10 N -0.928 5.928 11 Si 0.950 3.050 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.256 1.256 15 S 2.798 3.202 16 O -1.004 7.004 17 O -1.016 7.016 18 N -1.111 6.111 19 C 0.126 3.874 20 C 0.091 3.909 21 H 0.090 0.910 22 C -0.160 4.160 23 C -0.080 4.080 24 C -0.287 4.287 25 C 0.038 3.962 26 O -0.333 6.333 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.029 0.971 35 H 0.016 0.984 36 H 0.262 0.738 37 H 0.423 0.577 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 13.174 2.409 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.002 3.998 5 N -0.829 5.829 6 C 0.138 3.862 7 C -0.570 4.570 8 H 0.091 0.909 9 C -0.186 4.186 10 N -0.568 5.568 11 Si 0.776 3.224 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.180 1.180 15 S 2.806 3.194 16 O -0.988 6.988 17 O -0.999 6.999 18 N -0.874 5.874 19 C 0.000 4.000 20 C 0.034 3.966 21 H 0.108 0.892 22 C -0.199 4.199 23 C -0.117 4.117 24 C -0.306 4.306 25 C -0.024 4.024 26 O -0.247 6.247 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.047 0.953 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.259 0.741 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.156 0.844 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.630 12.938 1.693 14.636 hybrid contribution 0.700 -0.524 0.479 0.997 sum 7.331 12.414 2.172 14.579 Atomic orbital electron populations 1.22875 0.80529 1.03110 1.00617 1.88054 1.20701 1.28483 1.95446 1.23192 0.94599 0.84738 1.01211 1.21349 0.92435 0.99066 0.86947 1.57494 1.79238 1.17872 1.28316 1.18774 0.97210 0.74006 0.96165 1.21812 1.08788 0.92985 1.33432 0.90871 1.25730 0.99408 0.97511 0.95979 1.70087 1.38884 1.04570 1.43308 0.85676 0.80249 0.78223 0.78286 1.20538 1.21401 1.18021 1.01204 0.73149 0.71741 0.73314 1.93530 1.70468 1.47263 1.87565 1.93530 1.87119 1.70875 1.48408 1.55528 1.24557 1.17497 1.89770 1.21420 0.85412 0.89383 1.03782 1.22633 0.93450 0.93318 0.87205 0.89200 1.22283 0.95656 0.98007 1.03950 1.20383 0.96039 0.96675 0.98645 1.22759 0.99595 1.03325 1.04941 1.22483 0.82416 0.97646 0.99842 1.85919 1.27982 1.68433 1.42371 0.92164 0.94119 0.89730 0.89652 0.93868 0.89689 0.87386 0.95284 0.96619 0.92869 0.74104 0.89831 0.90509 0.89061 0.91705 0.90069 0.89636 0.84444 0.80401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.23 9.04 -148.98 -1.35 -16.57 16 3 C 0.04 1.31 6.28 71.98 0.45 1.76 16 4 C 0.13 4.36 5.73 86.38 0.49 4.86 16 5 N -0.99 -40.93 2.84 -519.85 -1.47 -42.41 16 6 C 0.26 13.46 5.35 85.63 0.46 13.92 16 7 C -0.53 -27.52 8.53 25.60 0.22 -27.30 16 8 H 0.07 3.56 6.49 -2.91 -0.02 3.55 16 9 C 0.01 0.70 5.46 84.66 0.46 1.16 16 10 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 11 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 15 S 2.80 109.78 6.07 -56.49 -0.34 109.43 16 16 O -1.00 -39.18 17.17 -128.00 -2.20 -41.38 16 17 O -1.02 -48.18 16.00 -128.00 -2.05 -50.23 16 18 N -1.11 -35.15 6.02 -187.48 -1.13 -36.28 16 19 C 0.13 4.14 5.93 86.38 0.51 4.65 16 20 C 0.09 2.39 2.94 30.76 0.09 2.48 16 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 22 C -0.16 -3.92 5.54 30.85 0.17 -3.75 16 23 C -0.08 -1.55 6.23 29.85 0.19 -1.37 16 24 C -0.29 -5.38 9.97 25.89 0.26 -5.12 16 25 C 0.04 0.78 10.88 68.11 0.74 1.52 16 26 O -0.33 -8.64 9.86 -84.11 -0.83 -9.47 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.43 7.97 -2.39 -0.02 1.41 16 32 H 0.08 3.00 8.05 -2.39 -0.02 2.98 16 33 H 0.11 2.95 7.78 -2.39 -0.02 2.93 16 34 H 0.03 1.63 6.59 -2.39 -0.02 1.62 16 35 H 0.02 0.92 6.76 -2.39 -0.02 0.90 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.42 11.02 8.52 -96.75 -0.82 10.20 16 38 H 0.08 2.96 7.74 -2.39 -0.02 2.94 16 39 H 0.08 2.84 5.95 -2.38 -0.01 2.83 16 40 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -70.98 378.56 -1.60 -72.58 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.16 Total: 29.66 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.29 Total: -5.24 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -2.32 Total: -132.89 kcal Atomic # 8 Polarization: -111.22 SS G_CDS: -6.42 Total: -117.65 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 109.78 SS G_CDS: -0.34 Total: 109.43 kcal Total: -70.98 -1.60 -72.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800122075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.925 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds