Wall clock time and date at job start Tue Mar 31 2020 17:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99730 * 2 1 4 4 C 1.53003 * 109.47194 * 180.02562 * 3 2 1 5 5 S 1.81393 * 109.47289 * 179.97438 * 4 3 2 6 6 O 1.42099 * 108.57770 * 65.51505 * 5 4 3 7 7 O 1.42093 * 108.58136 * 294.48631 * 5 4 3 8 8 C 1.81404 * 101.92151 * 179.97438 * 5 4 3 9 9 C 1.50701 * 109.47098 * 179.97438 * 8 5 4 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 5 12 12 C 1.47074 * 120.88261 * 359.72571 * 11 9 8 13 13 C 1.53695 * 108.27576 * 128.74910 * 12 11 9 14 14 N 1.46904 * 109.25420 * 54.08473 * 13 12 11 15 15 C 1.46897 * 110.99901 * 172.60509 * 14 13 12 16 16 C 1.50703 * 109.47428 * 294.29982 * 15 14 13 17 17 H 1.08006 * 119.99872 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00045 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00290 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46960 * 89.99695 * 20 18 16 22 22 H 1.48498 * 109.47151 * 209.99981 * 20 18 16 23 23 H 1.48499 * 109.46789 * 329.99889 * 20 18 16 24 24 C 1.46897 * 111.26792 * 296.75440 * 14 13 12 25 25 C 1.47075 * 120.87669 * 180.02562 * 11 9 8 26 26 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47025 * 299.99738 * 1 2 3 28 28 H 1.09006 * 109.47356 * 60.00093 * 1 2 3 29 29 H 1.08995 * 109.47205 * 60.00063 * 3 2 1 30 30 H 1.08998 * 109.47469 * 299.99864 * 3 2 1 31 31 H 1.09005 * 109.47062 * 59.99853 * 4 3 2 32 32 H 1.09008 * 109.46727 * 300.00402 * 4 3 2 33 33 H 1.09002 * 109.47124 * 60.00027 * 8 5 4 34 34 H 1.09001 * 109.46975 * 300.00148 * 8 5 4 35 35 H 1.08994 * 109.63016 * 248.52290 * 12 11 9 36 36 H 1.09001 * 109.62513 * 9.10199 * 12 11 9 37 37 H 1.08997 * 109.65385 * 294.08176 * 13 12 11 38 38 H 1.08999 * 109.42153 * 173.94686 * 13 12 11 39 39 H 1.08994 * 109.47420 * 54.30050 * 15 14 13 40 40 H 1.08997 * 109.47407 * 174.29955 * 15 14 13 41 41 H 0.96998 * 119.99927 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.49120 * 303.14081 * 24 14 13 43 43 H 1.09003 * 109.48945 * 183.06528 * 24 14 13 44 44 H 1.09003 * 109.63301 * 350.89825 * 25 11 9 45 45 H 1.09003 * 109.62726 * 111.48107 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 16 4.2731 2.8419 -0.0014 6 8 3.9478 3.4829 1.2244 7 8 3.9468 3.4823 -1.2272 8 6 6.0470 2.4624 -0.0013 9 6 6.8355 3.7467 -0.0025 10 8 6.2577 4.8130 -0.0029 11 7 8.1828 3.7102 -0.0022 12 6 8.9033 2.4281 0.0055 13 6 9.9359 2.4487 -1.1327 14 7 10.7858 3.6389 -0.9943 15 6 11.8958 3.6079 -1.9560 16 6 12.8157 2.4611 -1.6247 17 1 12.5973 1.8191 -0.7840 18 6 13.9354 2.2307 -2.3954 19 7 14.7379 1.2295 -2.1065 20 14 14.3128 3.3405 -3.8498 21 1 15.1600 4.4743 -3.4006 22 1 15.0349 2.5648 -4.8901 23 1 13.0435 3.8645 -4.4150 24 6 10.0015 4.8729 -1.1352 25 6 8.9715 4.9516 -0.0028 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6440 -0.8909 32 1 3.8574 0.6436 0.8892 33 1 6.2948 1.8835 -0.8911 34 1 6.2948 1.8843 0.8889 35 1 9.4103 2.2986 0.9617 36 1 8.1989 1.6113 -0.1522 37 1 9.4220 2.4785 -2.0934 38 1 10.5537 1.5523 -1.0779 39 1 11.5004 3.4771 -2.9632 40 1 12.4496 4.5451 -1.9020 41 1 15.5259 1.0677 -2.6485 42 1 9.4866 4.8690 -2.0960 43 1 10.6668 5.7347 -1.0822 44 1 8.3122 5.8042 -0.1659 45 1 9.4849 5.0597 0.9527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827485300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:41 Heat of formation + Delta-G solvation = -125.830174 kcal Electronic energy + Delta-G solvation = -27066.584475 eV Core-core repulsion = 23019.711103 eV Total energy + Delta-G solvation = -4046.873372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28779 -38.47173 -37.85646 -37.27810 -36.28533 -34.72840 -32.61828 -32.45820 -31.66804 -30.22616 -28.68281 -27.05788 -25.76060 -24.01213 -23.49979 -22.00254 -20.82113 -19.31647 -18.92854 -17.98484 -17.21668 -17.05999 -16.96186 -16.74420 -16.33575 -15.87540 -15.64882 -15.43787 -15.14016 -14.76482 -14.64890 -14.26060 -14.12045 -13.77137 -13.68347 -13.51339 -12.76880 -12.71808 -12.49002 -12.37485 -12.33762 -12.29932 -12.23280 -11.95039 -11.68835 -11.45782 -11.29894 -11.25100 -11.04480 -10.92033 -10.67672 -10.47159 -10.27325 -10.19713 -9.99118 -9.43401 -8.76413 -8.67269 -7.58721 -6.16187 -4.14727 -0.56299 2.26019 2.33406 2.66068 3.05392 3.21308 3.29335 3.30776 3.56663 3.62615 4.03343 4.09539 4.14101 4.32488 4.47344 4.51644 4.66047 4.73604 4.82750 4.83927 4.99650 5.03147 5.11445 5.13509 5.19234 5.19716 5.29447 5.44242 5.55377 5.61987 5.82970 6.05528 6.22109 6.25855 6.38614 6.50593 6.70079 6.81989 7.16366 7.43703 7.69757 7.78963 7.84168 8.51077 8.89917 9.45135 10.96441 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002319 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.625585 B =12072.554919 C =12745.395350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.383 6.383 3 C 0.074 3.926 4 C -0.629 4.629 5 S 2.461 3.539 6 O -0.915 6.915 7 O -0.915 6.915 8 C -0.656 4.656 9 C 0.542 3.458 10 O -0.539 6.539 11 N -0.595 5.595 12 C 0.104 3.896 13 C 0.047 3.953 14 N -0.527 5.527 15 C 0.162 3.838 16 C -0.513 4.513 17 H 0.081 0.919 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.037 3.963 25 C 0.116 3.884 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.106 0.894 39 H -0.010 1.010 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.030 0.970 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.221 -2.176 4.839 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.302 6.302 3 C -0.004 4.004 4 C -0.755 4.755 5 S 2.636 3.364 6 O -0.912 6.912 7 O -0.912 6.912 8 C -0.784 4.784 9 C 0.327 3.673 10 O -0.418 6.418 11 N -0.327 5.327 12 C -0.019 4.019 13 C -0.082 4.082 14 N -0.252 5.252 15 C 0.036 3.964 16 C -0.552 4.552 17 H 0.099 0.901 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.093 4.093 25 C -0.006 4.006 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.124 0.876 39 H 0.008 0.992 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.415 -1.080 5.241 24.994 hybrid contribution 0.508 -0.387 -1.665 1.784 sum -23.907 -1.467 3.575 24.217 Atomic orbital electron populations 1.22852 0.80256 1.03329 1.00591 1.87912 1.20294 1.26463 1.95543 1.22030 0.89445 0.86656 1.02257 1.30644 1.05995 1.25853 1.13030 1.07185 0.76848 0.76428 0.75910 1.93593 1.81311 1.70538 1.45804 1.93598 1.81254 1.70538 1.45790 1.30814 1.26130 1.07661 1.13767 1.19019 0.82987 0.88198 0.77058 1.90836 1.69041 1.30686 1.51267 1.48105 1.04413 1.09138 1.71067 1.22255 0.94511 0.83790 1.01354 1.22479 0.94029 0.96834 0.94835 1.61904 1.09688 0.99781 1.53778 1.20190 0.88954 0.98385 0.88861 1.20978 1.06896 1.12313 1.14972 0.90065 1.24895 0.95894 0.95139 0.97318 1.69884 1.14394 1.29504 1.39838 0.86867 0.78849 0.81110 0.82947 1.20062 1.21139 1.19329 1.22493 0.95278 0.95315 0.96192 1.21889 0.92702 0.85984 1.00023 0.89087 0.93529 0.93528 0.91310 0.91316 0.83880 0.83890 0.81939 0.81923 0.89712 0.89801 0.95391 0.87591 0.99243 0.95487 0.92541 0.95186 0.89657 0.88795 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.21 10.70 -35.23 -0.38 -3.59 16 3 C 0.07 0.55 5.95 37.16 0.22 0.78 16 4 C -0.63 -3.70 6.17 37.16 0.23 -3.47 16 5 S 2.46 23.66 3.96 -107.50 -0.43 23.24 16 6 O -0.92 -11.98 17.95 -59.53 -1.07 -13.05 16 7 O -0.91 -12.29 17.95 -59.53 -1.07 -13.36 16 8 C -0.66 -5.34 4.65 36.01 0.17 -5.17 16 9 C 0.54 7.42 7.73 -10.98 -0.08 7.33 16 10 O -0.54 -9.33 15.08 2.54 0.04 -9.29 16 11 N -0.60 -8.14 3.00 -172.16 -0.52 -8.66 16 12 C 0.10 1.27 6.53 -3.37 -0.02 1.25 16 13 C 0.05 0.77 5.47 -3.46 -0.02 0.76 16 14 N -0.53 -10.00 4.62 -235.44 -1.09 -11.08 16 15 C 0.16 3.68 3.79 -4.98 -0.02 3.66 16 16 C -0.51 -13.65 8.96 -34.44 -0.31 -13.95 16 17 H 0.08 2.32 7.37 -52.48 -0.39 1.93 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 20 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 C 0.04 0.59 5.62 -3.68 -0.02 0.57 16 25 C 0.12 1.66 6.60 -3.58 -0.02 1.63 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.16 0.81 7.67 -51.92 -0.40 0.41 16 34 H 0.16 0.71 7.99 -51.92 -0.41 0.29 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.71 6.02 -51.93 -0.31 0.40 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 1.91 6.67 -51.93 -0.35 1.56 16 39 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 40 H 0.03 0.62 7.40 -51.93 -0.38 0.23 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.29 7.99 -51.93 -0.41 0.88 16 44 H 0.09 1.33 7.06 -51.93 -0.37 0.96 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -38.27 376.61 -8.81 -47.07 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -7.21 Total: -3.90 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 1.14 Total: -3.54 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.83 Total: -45.28 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -2.48 Total: -39.29 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Atomic # 16 Polarization: 23.66 SS G_CDS: -0.43 Total: 23.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.27 -8.81 -47.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.758 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds