Wall clock time and date at job start Tue Mar 31 2020 17:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99730 * 2 1 4 4 C 1.53003 * 109.47194 * 180.02562 * 3 2 1 5 5 S 1.81393 * 109.47289 * 179.97438 * 4 3 2 6 6 O 1.42099 * 108.57770 * 65.51505 * 5 4 3 7 7 O 1.42093 * 108.58136 * 294.48631 * 5 4 3 8 8 C 1.81404 * 101.92151 * 179.97438 * 5 4 3 9 9 C 1.50701 * 109.47098 * 179.97438 * 8 5 4 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 5 12 12 C 1.47074 * 120.88261 * 359.72571 * 11 9 8 13 13 C 1.53695 * 108.27576 * 128.74910 * 12 11 9 14 14 N 1.46904 * 109.25420 * 54.08473 * 13 12 11 15 15 C 1.46897 * 110.99901 * 172.60509 * 14 13 12 16 16 C 1.50703 * 109.47428 * 294.29982 * 15 14 13 17 17 H 1.08006 * 119.99872 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00045 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00290 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46960 * 89.99695 * 20 18 16 22 22 H 1.48498 * 109.47151 * 209.99981 * 20 18 16 23 23 H 1.48499 * 109.46789 * 329.99889 * 20 18 16 24 24 C 1.46897 * 111.26792 * 296.75440 * 14 13 12 25 25 C 1.47075 * 120.87669 * 180.02562 * 11 9 8 26 26 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47025 * 299.99738 * 1 2 3 28 28 H 1.09006 * 109.47356 * 60.00093 * 1 2 3 29 29 H 1.08995 * 109.47205 * 60.00063 * 3 2 1 30 30 H 1.08998 * 109.47469 * 299.99864 * 3 2 1 31 31 H 1.09005 * 109.47062 * 59.99853 * 4 3 2 32 32 H 1.09008 * 109.46727 * 300.00402 * 4 3 2 33 33 H 1.09002 * 109.47124 * 60.00027 * 8 5 4 34 34 H 1.09001 * 109.46975 * 300.00148 * 8 5 4 35 35 H 1.08994 * 109.63016 * 248.52290 * 12 11 9 36 36 H 1.09001 * 109.62513 * 9.10199 * 12 11 9 37 37 H 1.08997 * 109.65385 * 294.08176 * 13 12 11 38 38 H 1.08999 * 109.42153 * 173.94686 * 13 12 11 39 39 H 1.08994 * 109.47420 * 54.30050 * 15 14 13 40 40 H 1.08997 * 109.47407 * 174.29955 * 15 14 13 41 41 H 0.96998 * 119.99927 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.49120 * 303.14081 * 24 14 13 43 43 H 1.09003 * 109.48945 * 183.06528 * 24 14 13 44 44 H 1.09003 * 109.63301 * 350.89825 * 25 11 9 45 45 H 1.09003 * 109.62726 * 111.48107 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 16 4.2731 2.8419 -0.0014 6 8 3.9478 3.4829 1.2244 7 8 3.9468 3.4823 -1.2272 8 6 6.0470 2.4624 -0.0013 9 6 6.8355 3.7467 -0.0025 10 8 6.2577 4.8130 -0.0029 11 7 8.1828 3.7102 -0.0022 12 6 8.9033 2.4281 0.0055 13 6 9.9359 2.4487 -1.1327 14 7 10.7858 3.6389 -0.9943 15 6 11.8958 3.6079 -1.9560 16 6 12.8157 2.4611 -1.6247 17 1 12.5973 1.8191 -0.7840 18 6 13.9354 2.2307 -2.3954 19 7 14.7379 1.2295 -2.1065 20 14 14.3128 3.3405 -3.8498 21 1 15.1600 4.4743 -3.4006 22 1 15.0349 2.5648 -4.8901 23 1 13.0435 3.8645 -4.4150 24 6 10.0015 4.8729 -1.1352 25 6 8.9715 4.9516 -0.0028 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6440 -0.8909 32 1 3.8574 0.6436 0.8892 33 1 6.2948 1.8835 -0.8911 34 1 6.2948 1.8843 0.8889 35 1 9.4103 2.2986 0.9617 36 1 8.1989 1.6113 -0.1522 37 1 9.4220 2.4785 -2.0934 38 1 10.5537 1.5523 -1.0779 39 1 11.5004 3.4771 -2.9632 40 1 12.4496 4.5451 -1.9020 41 1 15.5259 1.0677 -2.6485 42 1 9.4866 4.8690 -2.0960 43 1 10.6668 5.7347 -1.0822 44 1 8.3122 5.8042 -0.1659 45 1 9.4849 5.0597 0.9527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827485300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:40 Heat of formation + Delta-G solvation = -158.761108 kcal Electronic energy + Delta-G solvation = -27068.012468 eV Core-core repulsion = 23019.711103 eV Total energy + Delta-G solvation = -4048.301365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38304 -39.16581 -38.97399 -38.10635 -37.10985 -36.11424 -34.48766 -33.02085 -32.75352 -31.24185 -30.26664 -27.50675 -27.22544 -24.81131 -24.49979 -23.52858 -22.22451 -20.29708 -19.79833 -18.97000 -18.77019 -18.01582 -17.66964 -17.64451 -17.04171 -16.69131 -16.50505 -16.43014 -16.30604 -16.06714 -15.80790 -15.66624 -15.20626 -14.75599 -14.66985 -14.54434 -14.45141 -13.75919 -13.57652 -13.21370 -13.19833 -13.18310 -13.11141 -12.91455 -12.69290 -12.56452 -12.47418 -12.40353 -12.24372 -12.05906 -11.99514 -11.86408 -11.68807 -11.41882 -11.29227 -10.77493 -10.76966 -9.92421 -9.08807 -8.27835 -6.30491 -1.25279 1.27448 1.35162 1.36855 1.45760 1.68946 1.72039 2.33941 2.44073 2.92331 3.00019 3.04748 3.13806 3.24836 3.59143 3.72749 3.88972 3.93843 3.98918 4.18067 4.18463 4.21839 4.25682 4.40322 4.43505 4.47206 4.51042 4.56254 4.69957 4.72534 4.79447 4.83321 4.85202 4.91522 5.03099 5.10826 5.30053 5.52369 5.89797 6.02160 6.15998 6.30663 6.58168 6.75800 6.76917 7.33243 8.87744 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002319 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.625585 B =12072.554919 C =12745.395350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.399 6.399 3 C 0.056 3.944 4 C -0.600 4.600 5 S 2.455 3.545 6 O -0.964 6.964 7 O -0.967 6.967 8 C -0.648 4.648 9 C 0.530 3.470 10 O -0.584 6.584 11 N -0.599 5.599 12 C 0.110 3.890 13 C 0.044 3.956 14 N -0.540 5.540 15 C 0.170 3.830 16 C -0.511 4.511 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.943 5.943 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.256 1.256 24 C 0.040 3.960 25 C 0.118 3.882 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.203 0.797 34 H 0.211 0.789 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.028 0.972 38 H 0.084 0.916 39 H -0.014 1.014 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.025 0.975 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.359 -3.305 4.685 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.318 6.318 3 C -0.022 4.022 4 C -0.731 4.731 5 S 2.638 3.362 6 O -0.961 6.961 7 O -0.964 6.964 8 C -0.777 4.777 9 C 0.319 3.681 10 O -0.466 6.466 11 N -0.330 5.330 12 C -0.011 4.011 13 C -0.085 4.085 14 N -0.264 5.264 15 C 0.043 3.957 16 C -0.549 4.549 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.584 5.584 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.180 1.180 24 C -0.089 4.089 25 C -0.004 4.004 26 H 0.123 0.877 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.190 0.810 32 H 0.193 0.807 33 H 0.221 0.779 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.047 0.953 38 H 0.102 0.898 39 H 0.003 0.997 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.580 -2.170 5.098 26.173 hybrid contribution 0.806 -0.129 -1.550 1.752 sum -24.774 -2.299 3.549 25.132 Atomic orbital electron populations 1.23070 0.79103 1.04495 1.01305 1.87865 1.21690 1.26614 1.95675 1.22230 0.90608 0.86738 1.02619 1.30339 1.04537 1.22076 1.16103 1.06889 0.77522 0.77821 0.73996 1.93535 1.82343 1.73226 1.46981 1.93537 1.82368 1.73338 1.47198 1.30787 1.23195 1.05636 1.18037 1.19843 0.82925 0.89584 0.75790 1.90827 1.69770 1.33026 1.52939 1.48190 1.04712 1.09167 1.70927 1.22341 0.94474 0.84626 0.99703 1.22521 0.94339 0.94814 0.96838 1.61819 1.10180 1.01885 1.52546 1.19950 0.89744 0.96562 0.89433 1.21201 1.07415 1.12732 1.13578 0.93274 1.25738 0.95909 0.96598 1.00354 1.70023 1.15263 1.31606 1.41520 0.85824 0.79111 0.79214 0.79411 1.19305 1.20940 1.17962 1.22513 0.95437 0.94171 0.96751 1.21780 0.92322 0.86832 0.99494 0.87747 0.92797 0.92934 0.91087 0.91318 0.81038 0.80737 0.77938 0.77237 0.89237 0.84849 0.95336 0.89797 0.99676 0.95401 0.92471 0.95670 0.89044 0.88960 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -5.73 10.70 -148.98 -1.59 -7.32 16 3 C 0.06 0.72 5.95 71.98 0.43 1.15 16 4 C -0.60 -4.82 6.17 71.98 0.44 -4.38 16 5 S 2.46 42.90 3.96 -56.49 -0.22 42.67 16 6 O -0.96 -24.87 17.95 -125.75 -2.26 -27.13 16 7 O -0.97 -25.82 17.95 -125.74 -2.26 -28.08 16 8 C -0.65 -7.86 4.65 71.24 0.33 -7.53 16 9 C 0.53 13.33 7.73 87.66 0.68 14.01 16 10 O -0.58 -20.00 15.08 -0.15 0.00 -20.00 16 11 N -0.60 -14.91 3.00 -816.99 -2.45 -17.36 16 12 C 0.11 2.35 6.53 86.50 0.57 2.92 16 13 C 0.04 1.36 5.47 86.54 0.47 1.84 16 14 N -0.54 -20.00 4.62 -898.81 -4.15 -24.16 16 15 C 0.17 7.62 3.79 85.56 0.32 7.95 16 16 C -0.51 -27.45 8.96 25.60 0.23 -27.23 16 17 H 0.05 2.89 7.37 -2.91 -0.02 2.87 16 18 C 0.01 0.66 5.47 84.65 0.46 1.12 16 19 N -0.94 -56.27 13.96 21.45 0.30 -55.97 16 20 Si 0.94 42.44 27.47 68.60 1.88 44.33 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -10.90 6.54 99.48 0.65 -10.25 16 24 C 0.04 1.24 5.62 86.40 0.49 1.73 16 25 C 0.12 3.23 6.60 86.36 0.57 3.80 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.20 0.83 7.67 -2.39 -0.02 0.81 16 34 H 0.21 0.53 7.99 -2.39 -0.02 0.51 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.13 1.50 6.02 -2.39 -0.01 1.49 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 3.00 6.67 -2.39 -0.02 2.98 16 39 H -0.01 -0.66 7.18 -2.39 -0.02 -0.67 16 40 H 0.03 1.24 7.40 -2.39 -0.02 1.23 16 41 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 44 H 0.09 2.57 7.06 -2.39 -0.02 2.56 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -87.66 376.61 -3.59 -91.25 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.92 Total: 4.99 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.24 Total: -3.22 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -6.31 Total: -97.49 kcal Atomic # 8 Polarization: -76.42 SS G_CDS: -6.11 Total: -82.53 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: 42.90 SS G_CDS: -0.22 Total: 42.67 kcal Total: -87.66 -3.59 -91.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.512 kcal (2) G-P(sol) polarization free energy of solvation -87.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds