Wall clock time and date at job start Tue Mar 31 2020 17:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42910 * 114.00210 * 2 1 4 4 C 1.52993 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47357 * 64.99911 * 4 3 2 6 6 C 1.46223 * 124.85379 * 269.72040 * 5 4 3 7 7 N 1.46806 * 108.05486 * 179.82946 * 6 5 4 8 8 C 1.34774 * 127.03036 * 180.15187 * 7 6 5 9 9 O 1.21582 * 120.00198 * 0.34224 * 8 7 6 10 10 N 1.34779 * 119.99752 * 180.33309 * 8 7 6 11 11 C 1.39468 * 119.99643 * 175.13282 * 10 8 7 12 12 C 1.38642 * 119.64314 * 185.03520 * 11 10 8 13 13 C 1.40828 * 118.66665 * 179.72113 * 12 11 10 14 14 C 1.41550 * 120.99082 * 180.28124 * 13 12 11 15 15 H 1.08007 * 119.99322 * 203.72996 * 14 13 12 16 16 C 1.40022 * 120.00580 * 23.73288 * 14 13 12 17 17 N 1.30743 * 119.99980 * 17.15670 * 16 14 13 18 18 Si 1.86800 * 120.00412 * 197.15799 * 16 14 13 19 19 H 1.48504 * 109.47139 * 89.99503 * 18 16 14 20 20 H 1.48491 * 109.47474 * 210.00194 * 18 16 14 21 21 H 1.48503 * 109.46490 * 330.00004 * 18 16 14 22 22 C 1.41154 * 118.00750 * 0.53459 * 13 12 11 23 23 C 1.36590 * 119.12942 * 359.74224 * 22 13 12 24 24 N 1.32073 * 121.25618 * 359.97438 * 23 22 13 25 25 C 1.46984 * 105.93749 * 0.41675 * 7 6 5 26 26 C 1.34304 * 124.85719 * 90.02304 * 5 4 3 27 27 O 1.21285 * 125.41854 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47621 * 300.00616 * 1 2 3 29 29 H 1.09005 * 109.47085 * 60.00224 * 1 2 3 30 30 H 1.08992 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47082 * 59.99410 * 3 2 1 32 32 H 1.09005 * 109.46499 * 299.99796 * 3 2 1 33 33 H 1.09002 * 109.47090 * 184.99767 * 4 3 2 34 34 H 1.09000 * 109.47247 * 304.99357 * 4 3 2 35 35 H 1.08995 * 109.75730 * 299.64947 * 6 5 4 36 36 H 1.09003 * 109.75395 * 60.34692 * 6 5 4 37 37 H 0.97000 * 120.00105 * 355.13879 * 10 8 7 38 38 H 1.08000 * 120.66792 * 359.97438 * 12 11 10 39 39 H 0.96999 * 120.00255 * 180.02562 * 17 16 14 40 40 H 1.08004 * 120.43684 * 179.76204 * 22 13 12 41 41 H 1.07996 * 119.37252 * 179.97438 * 23 22 13 42 42 H 1.09003 * 110.03761 * 240.46394 * 25 7 6 43 43 H 1.08995 * 110.04295 * 119.01410 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1478 -0.8737 -1.4556 7 7 4.5957 -1.0863 -2.8374 8 6 4.8660 -2.2659 -3.4306 9 8 4.7390 -3.3026 -2.8083 10 7 5.2771 -2.2962 -4.7138 11 6 5.6540 -3.5059 -5.2968 12 6 6.1744 -3.5150 -6.5818 13 6 6.5539 -4.7473 -7.1483 14 6 7.0961 -4.8130 -8.4542 15 1 7.0288 -5.7297 -9.0212 16 6 7.7198 -3.6896 -9.0107 17 7 8.1032 -2.7057 -8.2398 18 14 8.0039 -3.5966 -10.8547 19 1 6.8308 -2.9590 -11.5048 20 1 9.2204 -2.7902 -11.1280 21 1 8.1863 -4.9670 -11.3970 22 6 6.3722 -5.9153 -6.3769 23 6 5.8458 -5.8076 -5.1211 24 7 5.5060 -4.6344 -4.6188 25 6 4.6951 0.2508 -3.4397 26 6 4.2874 1.2344 -2.3723 27 8 4.2460 2.4392 -2.5053 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.9785 2.1766 0.0902 34 1 3.8508 0.5686 0.8428 35 1 4.8940 -1.2586 -0.7606 36 1 3.1980 -1.3842 -1.2962 37 1 5.3108 -1.4768 -5.2319 38 1 6.2904 -2.5952 -7.1358 39 1 8.5349 -1.9273 -8.6254 40 1 6.6462 -6.8815 -6.7742 41 1 5.7047 -6.6988 -4.5277 42 1 4.0224 0.3266 -4.2940 43 1 5.7210 0.4439 -3.7533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:11 Heat of formation + Delta-G solvation = -35.697384 kcal Electronic energy + Delta-G solvation = -28277.035894 eV Core-core repulsion = 24130.919772 eV Total energy + Delta-G solvation = -4146.116121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.11130 -39.53679 -38.21147 -38.00175 -36.59582 -34.43216 -34.37503 -33.72270 -30.67779 -30.40985 -28.58995 -28.56080 -26.77737 -26.03707 -25.15304 -23.34699 -22.00822 -21.65106 -20.13572 -19.86342 -18.28916 -17.66958 -17.11265 -16.88311 -16.64140 -15.86944 -15.79401 -15.69579 -15.41702 -15.19893 -14.67917 -14.56819 -14.24587 -14.19509 -13.75853 -13.56892 -13.20636 -13.01437 -12.85919 -12.68589 -12.59127 -12.47012 -12.28821 -12.23909 -11.56214 -11.46818 -11.25765 -10.92395 -10.43987 -10.28536 -10.15913 -10.03676 -9.86414 -9.72152 -9.40710 -9.38176 -8.56149 -8.02318 -7.77430 -7.07589 -6.84927 -4.63655 2.17745 2.20677 2.64579 2.77195 2.80604 3.00739 3.03849 3.22336 3.39997 3.68318 3.82867 3.99320 4.10316 4.57918 4.63656 4.64866 4.82626 4.94942 5.01958 5.04599 5.12181 5.17539 5.24377 5.34437 5.39005 5.44284 5.60413 5.67214 5.93539 6.03118 6.52551 6.54684 6.69772 6.77870 6.81106 6.90953 7.07213 7.14743 7.38235 7.43474 7.75145 7.80970 7.99969 8.22610 8.41482 8.69147 8.72276 8.98556 9.67997 10.03293 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002590 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.706468 B =10808.992904 C =11849.918280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.041 3.959 4 C 0.137 3.863 5 N -0.619 5.619 6 C 0.360 3.640 7 N -0.650 5.650 8 C 0.726 3.274 9 O -0.516 6.516 10 N -0.661 5.661 11 C 0.354 3.646 12 C -0.246 4.246 13 C 0.145 3.855 14 C -0.454 4.454 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.786 5.786 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.284 4.284 23 C 0.122 3.878 24 N -0.556 5.556 25 C 0.065 3.935 26 C 0.523 3.477 27 O -0.521 6.521 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.405 0.595 38 H 0.127 0.873 39 H 0.282 0.718 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 10.361 11.852 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.037 4.037 4 C 0.015 3.985 5 N -0.354 5.354 6 C 0.151 3.849 7 N -0.396 5.396 8 C 0.427 3.573 9 O -0.385 6.385 10 N -0.308 5.308 11 C 0.129 3.871 12 C -0.272 4.272 13 C 0.136 3.864 14 C -0.485 4.485 15 H 0.101 0.899 16 C -0.141 4.141 17 N -0.411 5.411 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.308 4.308 23 C -0.031 4.031 24 N -0.275 5.275 25 C -0.061 4.061 26 C 0.310 3.690 27 O -0.397 6.397 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.145 0.855 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.123 0.877 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.378 10.242 13.191 19.154 hybrid contribution 0.371 0.868 -1.967 2.182 sum -9.007 11.110 11.224 18.181 Atomic orbital electron populations 1.22740 0.80753 1.03025 0.99834 1.87911 1.19968 1.27270 1.95414 1.23055 0.94002 0.85551 1.01107 1.21450 0.92338 0.99801 0.84863 1.48322 1.66543 1.07742 1.12827 1.21031 1.00957 0.79734 0.83175 1.47405 1.74287 1.04611 1.13251 1.15223 0.78893 0.81101 0.82047 1.91061 1.55434 1.28915 1.63099 1.42488 1.67955 1.09823 1.10553 1.17896 0.95216 0.84346 0.89653 1.21472 1.10441 1.00642 0.94602 1.17553 0.86615 0.89995 0.92191 1.19593 1.31884 0.98168 0.98849 0.89884 1.25963 0.92993 0.94679 1.00478 1.69779 1.27389 1.06734 1.37176 0.86253 0.78532 0.79602 0.82044 1.19149 1.20222 1.18469 1.21658 1.13402 0.98751 0.96944 1.21466 0.95087 0.93598 0.92987 1.67172 1.26342 0.96899 1.37123 1.21883 1.04577 0.82771 0.96912 1.20525 0.76280 0.88358 0.83840 1.90772 1.54058 1.12881 1.81940 0.94099 0.94133 0.89394 0.91856 0.92692 0.87790 0.88693 0.90442 0.89419 0.76007 0.85486 0.90664 0.87969 0.85928 0.87697 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.72 10.06 -35.23 -0.35 -4.08 16 3 C 0.04 0.32 6.28 37.15 0.23 0.55 16 4 C 0.14 1.07 6.37 -4.05 -0.03 1.04 16 5 N -0.62 -6.62 2.88 -177.58 -0.51 -7.13 16 6 C 0.36 4.42 7.51 -63.72 -0.48 3.94 16 7 N -0.65 -9.36 3.36 -184.00 -0.62 -9.97 16 8 C 0.73 13.86 8.49 -86.92 -0.74 13.13 16 9 O -0.52 -11.92 15.00 5.29 0.08 -11.84 16 10 N -0.66 -12.88 5.36 -15.86 -0.08 -12.96 16 11 C 0.35 8.47 7.42 -154.68 -1.15 7.33 16 12 C -0.25 -6.11 8.63 -38.45 -0.33 -6.44 16 13 C 0.14 3.74 5.60 -106.55 -0.60 3.15 16 14 C -0.45 -11.45 9.12 -37.65 -0.34 -11.79 16 15 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 16 C 0.08 1.86 5.19 -17.35 -0.09 1.77 16 17 N -0.79 -18.99 10.94 55.55 0.61 -18.39 16 18 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 22 C -0.28 -6.85 9.85 -39.07 -0.38 -7.24 16 23 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 24 N -0.56 -14.06 7.86 -12.76 -0.10 -14.16 16 25 C 0.07 0.77 6.36 -4.90 -0.03 0.73 16 26 C 0.52 6.43 8.13 -11.16 -0.09 6.34 16 27 O -0.52 -7.68 17.67 5.55 0.10 -7.58 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.73 7.98 -51.93 -0.41 0.31 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.14 7.61 -51.93 -0.40 0.75 16 37 H 0.41 6.54 7.79 -40.82 -0.32 6.22 16 38 H 0.13 3.13 6.21 -52.49 -0.33 2.80 16 39 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 40 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 41 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -33.10 370.28 -9.10 -42.20 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.65 Total: 9.19 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: -3.11 Total: 16.55 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.71 Total: -62.62 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.18 Total: -23.50 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.10 -9.10 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.505 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds