Wall clock time and date at job start Tue Mar 31 2020 17:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42910 * 114.00210 * 2 1 4 4 C 1.52993 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47357 * 64.99911 * 4 3 2 6 6 C 1.46223 * 124.85379 * 269.72040 * 5 4 3 7 7 N 1.46806 * 108.05486 * 179.82946 * 6 5 4 8 8 C 1.34774 * 127.03036 * 180.15187 * 7 6 5 9 9 O 1.21582 * 120.00198 * 0.34224 * 8 7 6 10 10 N 1.34779 * 119.99752 * 180.33309 * 8 7 6 11 11 C 1.39468 * 119.99643 * 175.13282 * 10 8 7 12 12 C 1.38642 * 119.64314 * 185.03520 * 11 10 8 13 13 C 1.40828 * 118.66665 * 179.72113 * 12 11 10 14 14 C 1.41550 * 120.99082 * 180.28124 * 13 12 11 15 15 H 1.08007 * 119.99322 * 203.72996 * 14 13 12 16 16 C 1.40022 * 120.00580 * 23.73288 * 14 13 12 17 17 N 1.30743 * 119.99980 * 17.15670 * 16 14 13 18 18 Si 1.86800 * 120.00412 * 197.15799 * 16 14 13 19 19 H 1.48504 * 109.47139 * 89.99503 * 18 16 14 20 20 H 1.48491 * 109.47474 * 210.00194 * 18 16 14 21 21 H 1.48503 * 109.46490 * 330.00004 * 18 16 14 22 22 C 1.41154 * 118.00750 * 0.53459 * 13 12 11 23 23 C 1.36590 * 119.12942 * 359.74224 * 22 13 12 24 24 N 1.32073 * 121.25618 * 359.97438 * 23 22 13 25 25 C 1.46984 * 105.93749 * 0.41675 * 7 6 5 26 26 C 1.34304 * 124.85719 * 90.02304 * 5 4 3 27 27 O 1.21285 * 125.41854 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47621 * 300.00616 * 1 2 3 29 29 H 1.09005 * 109.47085 * 60.00224 * 1 2 3 30 30 H 1.08992 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47082 * 59.99410 * 3 2 1 32 32 H 1.09005 * 109.46499 * 299.99796 * 3 2 1 33 33 H 1.09002 * 109.47090 * 184.99767 * 4 3 2 34 34 H 1.09000 * 109.47247 * 304.99357 * 4 3 2 35 35 H 1.08995 * 109.75730 * 299.64947 * 6 5 4 36 36 H 1.09003 * 109.75395 * 60.34692 * 6 5 4 37 37 H 0.97000 * 120.00105 * 355.13879 * 10 8 7 38 38 H 1.08000 * 120.66792 * 359.97438 * 12 11 10 39 39 H 0.96999 * 120.00255 * 180.02562 * 17 16 14 40 40 H 1.08004 * 120.43684 * 179.76204 * 22 13 12 41 41 H 1.07996 * 119.37252 * 179.97438 * 23 22 13 42 42 H 1.09003 * 110.03761 * 240.46394 * 25 7 6 43 43 H 1.08995 * 110.04295 * 119.01410 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1478 -0.8737 -1.4556 7 7 4.5957 -1.0863 -2.8374 8 6 4.8660 -2.2659 -3.4306 9 8 4.7390 -3.3026 -2.8083 10 7 5.2771 -2.2962 -4.7138 11 6 5.6540 -3.5059 -5.2968 12 6 6.1744 -3.5150 -6.5818 13 6 6.5539 -4.7473 -7.1483 14 6 7.0961 -4.8130 -8.4542 15 1 7.0288 -5.7297 -9.0212 16 6 7.7198 -3.6896 -9.0107 17 7 8.1032 -2.7057 -8.2398 18 14 8.0039 -3.5966 -10.8547 19 1 6.8308 -2.9590 -11.5048 20 1 9.2204 -2.7902 -11.1280 21 1 8.1863 -4.9670 -11.3970 22 6 6.3722 -5.9153 -6.3769 23 6 5.8458 -5.8076 -5.1211 24 7 5.5060 -4.6344 -4.6188 25 6 4.6951 0.2508 -3.4397 26 6 4.2874 1.2344 -2.3723 27 8 4.2460 2.4392 -2.5053 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.9785 2.1766 0.0902 34 1 3.8508 0.5686 0.8428 35 1 4.8940 -1.2586 -0.7606 36 1 3.1980 -1.3842 -1.2962 37 1 5.3108 -1.4768 -5.2319 38 1 6.2904 -2.5952 -7.1358 39 1 8.5349 -1.9273 -8.6254 40 1 6.6462 -6.8815 -6.7742 41 1 5.7047 -6.6988 -4.5277 42 1 4.0224 0.3266 -4.2940 43 1 5.7210 0.4439 -3.7533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:10 Heat of formation + Delta-G solvation = -57.090408 kcal Electronic energy + Delta-G solvation = -28277.963565 eV Core-core repulsion = 24130.919772 eV Total energy + Delta-G solvation = -4147.043792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.23651 -41.03035 -39.68998 -38.84935 -37.76643 -36.13655 -35.69466 -35.19004 -32.44213 -31.48646 -30.19601 -29.58602 -27.91348 -27.44935 -26.23278 -24.10544 -23.81916 -23.27765 -21.42461 -21.10868 -19.65102 -19.41580 -18.10729 -17.77745 -17.54876 -17.41872 -17.05957 -16.63268 -16.57296 -16.35023 -16.04549 -15.94747 -15.82030 -15.60001 -15.09676 -14.73236 -14.67167 -14.35666 -14.28416 -13.89186 -13.85661 -13.44872 -13.17185 -13.16337 -12.92192 -12.91024 -12.64065 -12.16101 -12.07662 -11.89500 -11.60197 -11.54799 -11.19009 -11.14666 -10.67680 -10.45716 -9.93142 -9.66716 -9.63103 -8.86024 -8.63980 -6.54155 0.83043 1.00209 1.02152 1.21677 1.43320 1.55815 1.58934 1.79342 2.11910 2.21558 2.66021 2.81243 2.83066 3.04446 3.77726 3.78392 3.96034 4.07955 4.18321 4.19815 4.28336 4.32731 4.39844 4.48740 4.53070 4.53924 4.60710 4.74549 4.79520 4.82766 4.85714 4.95381 5.08833 5.13881 5.24192 5.50826 5.63023 5.75433 5.77021 5.95262 6.16956 6.22792 6.54360 6.68853 6.79265 6.82469 6.85433 7.42784 7.86714 8.27119 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002590 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.706468 B =10808.992904 C =11849.918280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.410 6.410 3 C 0.042 3.958 4 C 0.130 3.870 5 N -0.610 5.610 6 C 0.363 3.637 7 N -0.643 5.643 8 C 0.729 3.271 9 O -0.559 6.559 10 N -0.654 5.654 11 C 0.354 3.646 12 C -0.261 4.261 13 C 0.116 3.884 14 C -0.482 4.482 15 H 0.084 0.916 16 C 0.041 3.959 17 N -0.809 5.809 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.297 4.297 23 C 0.117 3.883 24 N -0.580 5.580 25 C 0.063 3.937 26 C 0.526 3.474 27 O -0.545 6.545 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.419 0.581 38 H 0.124 0.876 39 H 0.293 0.707 40 H 0.116 0.884 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 11.536 11.813 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C -0.035 4.035 4 C 0.010 3.990 5 N -0.345 5.345 6 C 0.154 3.846 7 N -0.386 5.386 8 C 0.430 3.570 9 O -0.432 6.432 10 N -0.302 5.302 11 C 0.127 3.873 12 C -0.287 4.287 13 C 0.108 3.892 14 C -0.512 4.512 15 H 0.103 0.897 16 C -0.177 4.177 17 N -0.434 5.434 18 Si 0.806 3.194 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.321 4.321 23 C -0.036 4.036 24 N -0.300 5.300 25 C -0.063 4.063 26 C 0.313 3.687 27 O -0.423 6.423 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.257 0.743 38 H 0.142 0.858 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.454 11.477 13.196 19.881 hybrid contribution 0.364 0.551 -1.863 1.976 sum -9.090 12.028 11.333 18.861 Atomic orbital electron populations 1.22846 0.79789 1.03423 1.00654 1.87872 1.21182 1.28362 1.95580 1.23096 0.93700 0.85036 1.01712 1.21778 0.92614 1.00565 0.84016 1.48405 1.65813 1.06790 1.13461 1.21051 1.00849 0.80653 0.82023 1.47109 1.72932 1.04390 1.14197 1.15166 0.78504 0.81705 0.81583 1.91027 1.57251 1.30984 1.63930 1.42330 1.67659 1.09187 1.11067 1.18064 0.94398 0.85311 0.89530 1.21443 1.11674 1.00370 0.95236 1.17983 0.87233 0.90983 0.93049 1.19869 1.32923 0.99258 0.99175 0.89743 1.26794 0.92096 0.93778 1.04996 1.69806 1.27084 1.07232 1.39242 0.85140 0.78714 0.79652 0.75870 1.18543 1.19248 1.18254 1.21842 1.13938 0.99048 0.97228 1.21911 0.94253 0.94254 0.93162 1.67301 1.27328 0.97640 1.37762 1.22084 1.05943 0.80965 0.97305 1.20456 0.76085 0.87948 0.84200 1.90768 1.55453 1.13744 1.82347 0.92285 0.94283 0.89306 0.89159 0.94105 0.86648 0.86772 0.89652 0.89947 0.74313 0.85785 0.89631 0.86610 0.83332 0.86094 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -7.36 10.06 -148.98 -1.50 -8.86 16 3 C 0.04 0.58 6.28 71.98 0.45 1.03 16 4 C 0.13 1.77 6.37 86.38 0.55 2.32 16 5 N -0.61 -12.11 2.88 -834.40 -2.40 -14.51 16 6 C 0.36 8.51 7.51 170.95 1.28 9.79 16 7 N -0.64 -17.91 3.36 -854.32 -2.87 -20.79 16 8 C 0.73 27.68 8.49 179.05 1.52 29.20 16 9 O -0.56 -26.02 15.00 -3.98 -0.06 -26.08 16 10 N -0.65 -25.44 5.36 -322.36 -1.73 -27.16 16 11 C 0.35 17.11 7.42 132.76 0.98 18.10 16 12 C -0.26 -13.21 8.63 23.00 0.20 -13.01 16 13 C 0.12 6.09 5.60 -21.11 -0.12 5.97 16 14 C -0.48 -24.49 9.12 23.52 0.21 -24.27 16 15 H 0.08 4.12 7.90 -2.91 -0.02 4.09 16 16 C 0.04 1.92 5.19 85.29 0.44 2.37 16 17 N -0.81 -38.85 10.94 21.84 0.24 -38.62 16 18 Si 0.99 35.31 29.59 68.60 2.03 37.34 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 C -0.30 -14.51 9.85 22.60 0.22 -14.29 16 23 C 0.12 5.58 11.10 84.27 0.94 6.52 16 24 N -0.58 -29.64 7.86 -194.27 -1.53 -31.17 16 25 C 0.06 1.38 6.36 85.56 0.54 1.92 16 26 C 0.53 12.18 8.13 87.75 0.71 12.90 16 27 O -0.55 -15.38 17.67 -3.05 -0.05 -15.44 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.12 1.35 7.98 -2.39 -0.02 1.33 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.09 7.61 -2.39 -0.02 2.07 16 37 H 0.42 13.34 7.79 -92.71 -0.72 12.61 16 38 H 0.12 6.21 6.21 -2.91 -0.02 6.19 16 39 H 0.29 12.56 8.29 -92.71 -0.77 11.79 16 40 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 41 H 0.15 6.09 8.06 -2.91 -0.02 6.06 16 42 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -71.45 370.28 1.66 -69.79 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.33 Total: 35.31 kcal Atomic # 6 Polarization: 30.98 SS G_CDS: 9.19 Total: 40.18 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -8.28 Total: -132.24 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -1.61 Total: -50.37 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -71.45 1.66 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.700 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds