Wall clock time and date at job start Tue Mar 31 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00028 * 2 1 4 4 O 1.20829 * 120.00214 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00115 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47188 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47120 * 180.02562 * 6 5 3 8 8 C 1.36933 * 119.99881 * 274.44558 * 7 6 5 9 9 H 1.08002 * 120.00312 * 326.61856 * 8 7 6 10 10 C 1.38813 * 120.00343 * 146.62262 * 8 7 6 11 11 N 1.31625 * 119.99351 * 336.83293 * 10 8 7 12 12 Si 1.86797 * 120.00469 * 156.83054 * 10 8 7 13 13 H 1.48504 * 109.46848 * 60.00048 * 12 10 8 14 14 H 1.48498 * 109.47254 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47342 * 300.00256 * 12 10 8 16 16 C 1.46500 * 119.99758 * 94.44535 * 7 6 5 17 17 C 1.53004 * 109.47074 * 90.00353 * 16 7 6 18 18 H 1.08994 * 110.88877 * 54.29582 * 17 16 7 19 19 C 1.55150 * 111.00071 * 290.41326 * 17 16 7 20 20 C 1.54369 * 102.92294 * 206.45564 * 19 17 16 21 21 N 1.47026 * 107.28379 * 22.13792 * 20 19 17 22 22 S 1.65607 * 125.64492 * 181.13036 * 21 20 19 23 23 C 1.81400 * 104.44830 * 269.95797 * 22 21 20 24 24 O 1.42100 * 104.27785 * 26.02779 * 22 21 20 25 25 O 1.42102 * 104.27513 * 153.88826 * 22 21 20 26 26 C 1.47422 * 108.70579 * 1.09315 * 21 20 19 27 27 H 1.08999 * 109.46806 * 299.99681 * 1 2 3 28 28 H 1.08992 * 109.47336 * 59.99901 * 1 2 3 29 29 H 1.08998 * 109.46602 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46787 * 60.00215 * 5 3 2 31 31 H 1.09001 * 109.47099 * 300.00151 * 5 3 2 32 32 H 1.09006 * 109.47050 * 59.99994 * 6 5 3 33 33 H 1.09001 * 109.47247 * 300.00089 * 6 5 3 34 34 H 0.97000 * 119.99321 * 179.97438 * 11 10 8 35 35 H 1.08993 * 109.47710 * 329.99679 * 16 7 6 36 36 H 1.09008 * 109.46567 * 209.99951 * 16 7 6 37 37 H 1.09004 * 110.72207 * 324.78779 * 19 17 16 38 38 H 1.09004 * 110.72369 * 88.06061 * 19 17 16 39 39 H 1.09001 * 109.84680 * 262.73217 * 20 19 17 40 40 H 1.09002 * 110.03323 * 141.64958 * 20 19 17 41 41 H 1.09000 * 109.47076 * 60.00254 * 23 22 21 42 42 H 1.09001 * 109.47188 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47157 * 300.00530 * 23 22 21 44 44 H 1.08994 * 110.36604 * 217.03350 * 26 21 20 45 45 H 1.09005 * 110.36312 * 94.71066 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0023 8 6 6.1526 2.7630 1.1795 9 1 5.7242 3.1877 2.0753 10 6 7.4023 2.1605 1.2262 11 7 7.7369 1.2680 0.3185 12 14 8.6091 2.6163 2.5772 13 1 8.0113 2.3054 3.9006 14 1 9.8624 1.8386 2.4046 15 1 8.9133 4.0678 2.5003 16 6 6.1884 2.9552 -1.2678 17 6 6.3658 4.4389 -1.5967 18 1 6.8403 4.9663 -0.7692 19 6 5.0084 5.0924 -1.9673 20 6 5.4274 6.2643 -2.8806 21 7 6.7574 5.9443 -3.4194 22 16 7.6455 6.9073 -4.4325 23 6 7.1408 6.3981 -6.0988 24 8 7.1893 8.2239 -4.1539 25 8 8.9927 6.5305 -4.1826 26 6 7.1699 4.6248 -2.9076 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9565 0.7806 0.8891 32 1 3.6108 3.2365 0.8890 33 1 3.6101 3.2360 -0.8911 34 1 8.6103 0.8473 0.3509 35 1 5.6234 2.4715 -2.0645 36 1 7.1670 2.4833 -1.1784 37 1 4.3766 4.3885 -2.5091 38 1 4.5009 5.4601 -1.0754 39 1 5.4741 7.1865 -2.3013 40 1 4.7136 6.3753 -3.6969 41 1 6.0695 6.5596 -6.2192 42 1 7.6828 6.9872 -6.8386 43 1 7.3669 5.3411 -6.2399 44 1 8.2400 4.6157 -2.7008 45 1 6.9143 3.8435 -3.6235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879471811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:40 Heat of formation + Delta-G solvation = -132.931375 kcal Electronic energy + Delta-G solvation = -27798.794941 eV Core-core repulsion = 23751.613638 eV Total energy + Delta-G solvation = -4047.181303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.06385 -38.42559 -37.08415 -36.39597 -35.91861 -35.59912 -32.09382 -31.47681 -29.69755 -29.44745 -28.94097 -27.38917 -25.25086 -24.26487 -22.12739 -21.30734 -19.99132 -19.63099 -18.81963 -17.60591 -17.28227 -16.78972 -16.34462 -16.20157 -16.10282 -15.90164 -15.17464 -14.66082 -14.03125 -13.99196 -13.70219 -13.52198 -13.36316 -13.24037 -13.12904 -12.92329 -12.80818 -12.26441 -12.19605 -12.09209 -12.00154 -11.92511 -11.71448 -11.46588 -11.21813 -11.04866 -10.95992 -10.87195 -10.72551 -10.60200 -10.40040 -10.19929 -10.06233 -9.94013 -9.81750 -9.66071 -8.80180 -8.57279 -6.75667 -5.88242 -3.42585 0.22372 2.61425 2.67569 3.08644 3.35531 3.42280 3.45975 3.87670 4.05991 4.42863 4.59294 4.76472 4.90159 5.13704 5.18336 5.22376 5.23864 5.24668 5.36488 5.48588 5.51460 5.60594 5.70629 5.74663 5.83530 5.99184 6.03202 6.11845 6.24528 6.33828 6.35888 6.42528 6.51193 6.59374 6.64282 6.71778 6.79098 6.95942 7.13679 7.60565 7.75360 8.12555 8.40308 9.08524 9.71121 10.25694 11.11200 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.003794 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.420032 B = 7378.838125 C = 9662.422964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.519 6.519 5 C -0.131 4.131 6 C 0.160 3.840 7 N -0.575 5.575 8 C -0.262 4.262 9 H 0.064 0.936 10 C 0.014 3.986 11 N -0.885 5.885 12 Si 0.897 3.103 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.282 1.282 16 C 0.150 3.850 17 C -0.108 4.108 18 H 0.084 0.916 19 C -0.118 4.118 20 C 0.122 3.878 21 N -1.011 6.011 22 S 2.628 3.372 23 C -0.676 4.676 24 O -0.959 6.959 25 O -0.954 6.954 26 C 0.119 3.881 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.257 0.743 35 H 0.027 0.973 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 2.642 -10.333 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.408 6.408 5 C -0.172 4.172 6 C 0.032 3.968 7 N -0.294 5.294 8 C -0.392 4.392 9 H 0.082 0.918 10 C -0.187 4.187 11 N -0.527 5.527 12 Si 0.726 3.274 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.208 1.208 16 C 0.023 3.977 17 C -0.130 4.130 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.003 4.003 21 N -0.850 5.850 22 S 2.721 3.279 23 C -0.825 4.825 24 O -0.950 6.950 25 O -0.944 6.944 26 C -0.006 4.006 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.670 3.555 -10.171 12.672 hybrid contribution -0.028 -0.292 0.078 0.303 sum -6.698 3.263 -10.093 12.545 Atomic orbital electron populations 1.23148 0.77757 1.02984 1.02098 1.86605 1.22495 1.34815 1.84398 1.24744 0.93003 0.80675 0.71034 1.90601 1.67620 1.36389 1.46169 1.22487 0.83818 1.05121 1.05759 1.20858 0.85734 0.90076 1.00111 1.43879 0.99286 1.82855 1.03374 1.19049 1.00042 1.31441 0.88658 0.91820 1.25053 1.00185 0.95552 0.97898 1.69929 1.21402 1.24730 1.36658 0.86469 0.80673 0.78428 0.81838 1.20792 1.21621 1.20804 1.21001 1.00915 0.89883 0.85909 1.23089 0.93401 1.01513 0.95045 0.89770 1.22689 0.98543 0.95843 0.98600 1.21751 0.82079 0.99516 0.96977 1.58557 1.31304 1.33388 1.61796 1.04344 0.73789 0.73530 0.76249 1.30616 1.12712 1.13004 1.26194 1.93584 1.82254 1.35868 1.83287 1.93607 1.33469 1.83644 1.83704 1.22164 1.00289 0.81841 0.96278 0.92292 0.92352 0.88745 0.88602 0.87515 0.93219 0.93179 0.93299 0.95475 0.87627 0.91375 0.90290 0.91453 0.92627 0.85657 0.85855 0.85417 0.90113 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.54 10.57 -39.25 -0.41 -5.96 16 3 C 0.46 7.79 7.96 36.01 0.29 8.08 16 4 O -0.52 -9.65 15.73 -18.75 -0.29 -9.95 16 5 C -0.13 -2.33 6.12 -27.88 -0.17 -2.50 16 6 C 0.16 3.04 4.66 -4.04 -0.02 3.02 16 7 N -0.58 -12.43 2.41 -173.23 -0.42 -12.84 16 8 C -0.26 -6.45 9.49 -15.06 -0.14 -6.59 16 9 H 0.06 1.59 7.93 -52.49 -0.42 1.18 16 10 C 0.01 0.34 4.95 -17.43 -0.09 0.26 16 11 N -0.88 -23.05 11.28 55.49 0.63 -22.42 16 12 Si 0.90 20.52 29.61 -169.99 -5.03 15.48 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.15 2.99 4.78 -4.04 -0.02 2.97 16 17 C -0.11 -1.87 3.27 -88.47 -0.29 -2.16 16 18 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 19 C -0.12 -1.72 5.04 -24.88 -0.13 -1.84 16 20 C 0.12 1.58 6.90 -3.04 -0.02 1.56 16 21 N -1.01 -13.55 3.62 -111.39 -0.40 -13.95 16 22 S 2.63 32.45 6.29 -107.50 -0.68 31.77 16 23 C -0.68 -5.30 10.99 101.05 1.11 -4.19 16 24 O -0.96 -14.60 17.60 -57.54 -1.01 -15.61 16 25 O -0.95 -15.18 17.28 -57.54 -0.99 -16.18 16 26 C 0.12 1.78 6.54 -2.53 -0.02 1.77 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 32 H 0.05 0.99 8.03 -51.93 -0.42 0.58 16 33 H 0.05 0.89 6.28 -51.93 -0.33 0.56 16 34 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.03 0.50 7.97 -51.93 -0.41 0.09 16 36 H 0.11 2.45 5.28 -51.92 -0.27 2.18 16 37 H 0.07 0.94 7.35 -51.93 -0.38 0.56 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.12 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.12 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 44 H 0.08 1.29 7.67 -51.93 -0.40 0.89 16 45 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -31.83 381.52 -8.55 -40.38 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.25 Total: 1.70 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 1.57 Total: 1.83 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.19 Total: -49.22 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.72 Total: -47.69 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 32.45 SS G_CDS: -0.68 Total: 31.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.83 -8.55 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.550 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds