Wall clock time and date at job start Tue Mar 31 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00028 * 2 1 4 4 O 1.20829 * 120.00214 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00115 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47188 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47120 * 180.02562 * 6 5 3 8 8 C 1.36933 * 119.99881 * 274.44558 * 7 6 5 9 9 H 1.08002 * 120.00312 * 326.61856 * 8 7 6 10 10 C 1.38813 * 120.00343 * 146.62262 * 8 7 6 11 11 N 1.31625 * 119.99351 * 336.83293 * 10 8 7 12 12 Si 1.86797 * 120.00469 * 156.83054 * 10 8 7 13 13 H 1.48504 * 109.46848 * 60.00048 * 12 10 8 14 14 H 1.48498 * 109.47254 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47342 * 300.00256 * 12 10 8 16 16 C 1.46500 * 119.99758 * 94.44535 * 7 6 5 17 17 C 1.53004 * 109.47074 * 90.00353 * 16 7 6 18 18 H 1.08994 * 110.88877 * 54.29582 * 17 16 7 19 19 C 1.55150 * 111.00071 * 290.41326 * 17 16 7 20 20 C 1.54369 * 102.92294 * 206.45564 * 19 17 16 21 21 N 1.47026 * 107.28379 * 22.13792 * 20 19 17 22 22 S 1.65607 * 125.64492 * 181.13036 * 21 20 19 23 23 C 1.81400 * 104.44830 * 269.95797 * 22 21 20 24 24 O 1.42100 * 104.27785 * 26.02779 * 22 21 20 25 25 O 1.42102 * 104.27513 * 153.88826 * 22 21 20 26 26 C 1.47422 * 108.70579 * 1.09315 * 21 20 19 27 27 H 1.08999 * 109.46806 * 299.99681 * 1 2 3 28 28 H 1.08992 * 109.47336 * 59.99901 * 1 2 3 29 29 H 1.08998 * 109.46602 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46787 * 60.00215 * 5 3 2 31 31 H 1.09001 * 109.47099 * 300.00151 * 5 3 2 32 32 H 1.09006 * 109.47050 * 59.99994 * 6 5 3 33 33 H 1.09001 * 109.47247 * 300.00089 * 6 5 3 34 34 H 0.97000 * 119.99321 * 179.97438 * 11 10 8 35 35 H 1.08993 * 109.47710 * 329.99679 * 16 7 6 36 36 H 1.09008 * 109.46567 * 209.99951 * 16 7 6 37 37 H 1.09004 * 110.72207 * 324.78779 * 19 17 16 38 38 H 1.09004 * 110.72369 * 88.06061 * 19 17 16 39 39 H 1.09001 * 109.84680 * 262.73217 * 20 19 17 40 40 H 1.09002 * 110.03323 * 141.64958 * 20 19 17 41 41 H 1.09000 * 109.47076 * 60.00254 * 23 22 21 42 42 H 1.09001 * 109.47188 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47157 * 300.00530 * 23 22 21 44 44 H 1.08994 * 110.36604 * 217.03350 * 26 21 20 45 45 H 1.09005 * 110.36312 * 94.71066 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0023 8 6 6.1526 2.7630 1.1795 9 1 5.7242 3.1877 2.0753 10 6 7.4023 2.1605 1.2262 11 7 7.7369 1.2680 0.3185 12 14 8.6091 2.6163 2.5772 13 1 8.0113 2.3054 3.9006 14 1 9.8624 1.8386 2.4046 15 1 8.9133 4.0678 2.5003 16 6 6.1884 2.9552 -1.2678 17 6 6.3658 4.4389 -1.5967 18 1 6.8403 4.9663 -0.7692 19 6 5.0084 5.0924 -1.9673 20 6 5.4274 6.2643 -2.8806 21 7 6.7574 5.9443 -3.4194 22 16 7.6455 6.9073 -4.4325 23 6 7.1408 6.3981 -6.0988 24 8 7.1893 8.2239 -4.1539 25 8 8.9927 6.5305 -4.1826 26 6 7.1699 4.6248 -2.9076 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9565 0.7806 0.8891 32 1 3.6108 3.2365 0.8890 33 1 3.6101 3.2360 -0.8911 34 1 8.6103 0.8473 0.3509 35 1 5.6234 2.4715 -2.0645 36 1 7.1670 2.4833 -1.1784 37 1 4.3766 4.3885 -2.5091 38 1 4.5009 5.4601 -1.0754 39 1 5.4741 7.1865 -2.3013 40 1 4.7136 6.3753 -3.6969 41 1 6.0695 6.5596 -6.2192 42 1 7.6828 6.9872 -6.8386 43 1 7.3669 5.3411 -6.2399 44 1 8.2400 4.6157 -2.7008 45 1 6.9143 3.8435 -3.6235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879471811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:40 Heat of formation + Delta-G solvation = -154.544769 kcal Electronic energy + Delta-G solvation = -27799.732168 eV Core-core repulsion = 23751.613638 eV Total energy + Delta-G solvation = -4048.118530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37348 -39.68469 -38.16958 -37.74311 -37.11827 -36.99088 -33.86086 -32.85470 -31.03213 -30.25228 -30.14660 -28.48716 -26.91574 -25.74176 -23.32602 -22.72586 -21.35045 -21.12015 -19.86265 -18.82844 -18.57113 -18.31863 -17.49412 -17.44191 -17.35539 -16.98160 -16.68163 -16.19715 -15.57144 -15.34713 -14.90622 -14.64635 -14.53640 -14.24742 -14.15209 -13.92542 -13.90135 -13.63363 -13.51859 -13.27487 -13.21727 -13.16831 -13.10722 -12.84538 -12.73818 -12.51932 -12.37779 -12.28087 -12.10806 -11.94918 -11.77064 -11.70813 -11.50415 -11.42181 -11.37501 -11.19298 -10.45818 -9.83885 -8.57856 -7.78342 -5.34776 -0.70076 1.26291 1.48046 1.53526 1.57106 1.68878 1.89504 2.55041 2.99295 3.10414 3.29265 3.59469 3.79612 3.96611 4.07426 4.12486 4.18938 4.29183 4.31220 4.36567 4.38992 4.48489 4.50446 4.65539 4.73382 4.76293 4.82772 4.85804 4.93323 4.99940 5.06349 5.13756 5.21011 5.26988 5.32143 5.39926 5.48645 5.54112 5.64451 5.75196 5.94387 6.51620 6.82544 7.22359 7.91313 8.39966 9.16040 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.003794 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.420032 B = 7378.838125 C = 9662.422964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.122 4.122 6 C 0.164 3.836 7 N -0.587 5.587 8 C -0.263 4.263 9 H 0.053 0.947 10 C -0.024 4.024 11 N -0.904 5.904 12 Si 0.941 3.059 13 H -0.278 1.278 14 H -0.294 1.294 15 H -0.289 1.289 16 C 0.154 3.846 17 C -0.109 4.109 18 H 0.046 0.954 19 C -0.109 4.109 20 C 0.122 3.878 21 N -1.017 6.017 22 S 2.626 3.374 23 C -0.642 4.642 24 O -0.995 6.995 25 O -1.000 7.000 26 C 0.126 3.874 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.252 0.748 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.060 0.940 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 2.359 -12.814 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.162 4.162 6 C 0.038 3.962 7 N -0.306 5.306 8 C -0.393 4.393 9 H 0.071 0.929 10 C -0.223 4.223 11 N -0.548 5.548 12 Si 0.770 3.230 13 H -0.204 1.204 14 H -0.220 1.220 15 H -0.216 1.216 16 C 0.027 3.973 17 C -0.131 4.131 18 H 0.065 0.935 19 C -0.148 4.148 20 C -0.003 4.003 21 N -0.855 5.855 22 S 2.725 3.275 23 C -0.797 4.797 24 O -0.986 6.986 25 O -0.991 6.991 26 C 0.000 4.000 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.079 0.921 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.629 3.279 -12.594 15.615 hybrid contribution 0.463 -0.210 0.784 0.934 sum -8.166 3.069 -11.811 14.683 Atomic orbital electron populations 1.23522 0.75158 1.05487 1.02471 1.86562 1.24951 1.33438 1.83817 1.24273 0.92436 0.80980 0.70671 1.90596 1.67900 1.37075 1.47163 1.22175 0.85065 1.03776 1.05227 1.20785 0.84170 0.91015 1.00243 1.43978 1.00307 1.83227 1.03071 1.19134 1.00406 1.30337 0.89437 0.92934 1.25473 1.01273 0.96054 0.99460 1.70023 1.21252 1.25690 1.37803 0.85768 0.79233 0.77449 0.80523 1.20411 1.21967 1.21603 1.20891 0.99295 0.91405 0.85660 1.22839 0.95616 0.99450 0.95229 0.93542 1.22597 0.96857 0.96569 0.98791 1.21799 0.82608 0.98026 0.97868 1.58451 1.31347 1.32552 1.63119 1.04167 0.72627 0.72575 0.78088 1.30298 1.14560 1.14380 1.20421 1.93537 1.82327 1.37837 1.84878 1.93550 1.36248 1.83921 1.85377 1.21992 0.98731 0.83507 0.95723 0.92221 0.91732 0.85263 0.88103 0.89177 0.94594 0.91466 0.93848 0.93738 0.90818 0.89750 0.91423 0.92638 0.88792 0.83079 0.83420 0.83544 0.92135 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.53 10.57 -51.41 -0.54 -11.07 16 3 C 0.47 15.34 7.96 71.24 0.57 15.91 16 4 O -0.54 -19.23 15.73 21.96 0.35 -18.88 16 5 C -0.12 -4.27 6.12 29.85 0.18 -4.09 16 6 C 0.16 6.24 4.66 86.38 0.40 6.64 16 7 N -0.59 -25.75 2.41 -701.98 -1.69 -27.44 16 8 C -0.26 -13.29 9.49 84.03 0.80 -12.49 16 9 H 0.05 2.73 7.93 -2.91 -0.02 2.70 16 10 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 11 N -0.90 -48.30 11.28 21.65 0.24 -48.05 16 12 Si 0.94 43.37 29.61 68.60 2.03 45.40 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 16 C 0.15 6.20 4.78 86.38 0.41 6.61 16 17 C -0.11 -3.82 3.27 -9.40 -0.03 -3.85 16 18 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 19 C -0.11 -3.06 5.04 31.80 0.16 -2.90 16 20 C 0.12 2.93 6.90 86.74 0.60 3.53 16 21 N -1.02 -25.89 3.62 -506.34 -1.83 -27.73 16 22 S 2.63 61.23 6.29 -56.49 -0.36 60.87 16 23 C -0.64 -7.01 10.99 113.37 1.25 -5.76 16 24 O -0.99 -29.52 17.60 -127.65 -2.25 -31.77 16 25 O -1.00 -31.98 17.28 -127.65 -2.21 -34.19 16 26 C 0.13 3.71 6.54 86.86 0.57 4.28 16 27 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 28 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 32 H 0.04 1.45 8.03 -2.38 -0.02 1.43 16 33 H 0.07 2.30 6.28 -2.39 -0.01 2.29 16 34 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 35 H 0.04 1.60 7.97 -2.39 -0.02 1.58 16 36 H 0.07 3.52 5.28 -2.38 -0.01 3.51 16 37 H 0.08 2.10 7.35 -2.38 -0.02 2.08 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 2.01 7.67 -2.39 -0.02 1.99 16 45 H 0.09 2.14 8.04 -2.38 -0.02 2.12 16 Total: -1.00 -71.54 381.52 1.24 -70.29 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.97 Total: 13.80 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.52 Total: 8.76 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.28 Total: -103.22 kcal Atomic # 8 Polarization: -91.26 SS G_CDS: -4.65 Total: -95.91 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 61.23 SS G_CDS: -0.36 Total: 60.87 kcal Total: -71.54 1.24 -70.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.250 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds