Wall clock time and date at job start Tue Mar 31 2020 18:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47222 * 180.02562 * 13 11 10 15 15 C 1.46835 * 111.00293 * 302.30644 * 14 13 11 16 16 C 1.52002 * 104.50660 * 134.27910 * 15 14 13 17 17 C 1.54479 * 108.53732 * 106.30704 * 16 15 14 18 18 S 1.82355 * 110.14936 * 321.24508 * 17 16 15 19 19 C 1.79572 * 106.38221 * 319.48192 * 18 17 16 20 20 C 1.39459 * 111.00099 * 169.99582 * 14 13 11 21 21 H 1.09006 * 109.36659 * 73.29076 * 20 14 13 22 22 C 1.50700 * 109.36848 * 313.54038 * 20 14 13 23 23 C 1.38229 * 120.00362 * 319.72455 * 22 20 14 24 24 C 1.38233 * 120.00269 * 179.78584 * 23 22 20 25 25 C 1.38240 * 119.99812 * 0.44296 * 24 23 22 26 26 C 1.38231 * 119.99940 * 359.81198 * 25 24 23 27 27 C 1.38240 * 120.00247 * 359.97438 * 26 25 24 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 30 30 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 31 31 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 32 32 H 1.09009 * 109.46601 * 300.00167 * 13 11 10 33 33 H 1.08998 * 109.47474 * 59.99965 * 13 11 10 34 34 H 1.09001 * 110.41940 * 253.02284 * 15 14 13 35 35 H 1.09004 * 110.41717 * 15.53234 * 15 14 13 36 36 H 1.09000 * 109.62544 * 346.58823 * 16 15 14 37 37 H 1.09008 * 109.62260 * 226.02074 * 16 15 14 38 38 H 1.08998 * 109.35256 * 201.04036 * 17 16 15 39 39 H 1.08999 * 109.35916 * 81.45494 * 17 16 15 40 40 H 1.08997 * 109.41519 * 327.78007 * 19 18 17 41 41 H 1.09005 * 109.36343 * 207.94679 * 19 18 17 42 42 H 1.08004 * 119.99830 * 0.02562 * 23 22 20 43 43 H 1.08003 * 120.00135 * 180.27728 * 24 23 22 44 44 H 1.07997 * 120.00029 * 179.83342 * 25 24 23 45 45 H 1.08001 * 120.00228 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00445 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 7 1.9989 -7.3008 0.0253 15 6 1.1002 -7.3857 1.1834 16 6 -0.2122 -7.8950 0.6103 17 6 -0.3890 -9.3724 1.0257 18 16 1.2131 -10.2406 0.9558 19 6 2.0436 -9.6527 -0.5239 20 6 2.8597 -8.3756 -0.1957 21 1 3.4585 -8.5490 0.6985 22 6 3.7706 -8.0565 -1.3531 23 6 3.2720 -7.4064 -2.4663 24 6 4.1085 -7.1098 -3.5261 25 6 5.4418 -7.4715 -3.4764 26 6 5.9393 -8.1264 -2.3653 27 6 5.1037 -8.4191 -1.3037 28 1 -0.4850 0.8400 0.0004 29 1 0.6245 -2.5529 0.8956 30 1 0.6244 -2.5609 -0.8844 31 1 3.1568 -3.4352 0.0096 32 1 3.3606 -5.9746 -0.8690 33 1 3.3595 -5.9671 0.9110 34 1 1.4925 -8.0885 1.9185 35 1 0.9632 -6.4014 1.6314 36 1 -0.1905 -7.8204 -0.4769 37 1 -1.0381 -7.3026 1.0043 38 1 -1.0922 -9.8565 0.3479 39 1 -0.7805 -9.4177 2.0420 40 1 1.3017 -9.4223 -1.2884 41 1 2.7157 -10.4274 -0.8930 42 1 2.2295 -7.1267 -2.5066 43 1 3.7199 -6.5978 -4.3940 44 1 6.0948 -7.2422 -4.3055 45 1 6.9809 -8.4094 -2.3266 46 1 5.4923 -8.9311 -0.4358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880387103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:35 Heat of formation + Delta-G solvation = 11.251606 kcal Electronic energy + Delta-G solvation = -27065.503802 eV Core-core repulsion = 23467.716756 eV Total energy + Delta-G solvation = -3597.787046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58722 -38.81663 -37.44250 -34.21141 -33.85094 -32.34027 -31.84090 -30.94610 -29.84405 -27.99013 -26.54331 -25.46770 -23.35069 -22.70833 -22.37794 -21.27373 -20.24399 -19.58198 -17.31771 -17.11035 -16.66721 -16.09789 -15.72008 -15.59882 -15.20269 -14.86754 -14.80396 -14.31349 -14.28224 -14.16858 -13.93100 -13.48422 -13.38026 -13.14388 -12.88954 -12.63826 -12.39783 -12.24334 -12.00840 -11.91800 -11.77855 -11.35227 -11.12826 -10.99082 -10.98630 -10.91427 -10.79519 -10.62800 -10.31237 -9.79387 -9.40392 -9.02957 -8.98371 -8.76175 -8.73275 -8.13481 -7.85774 -7.63702 -6.17810 -4.24530 1.17907 1.30962 1.61110 2.55594 3.23066 3.29382 3.31612 3.40240 3.62017 3.68661 4.21624 4.38561 4.55034 4.74197 4.79714 4.87342 4.91502 4.99812 5.03871 5.12001 5.18453 5.23606 5.35372 5.38176 5.45752 5.48117 5.55304 5.66084 5.66855 5.73605 5.84069 5.86139 5.91204 5.98533 6.24552 6.34958 6.44951 6.45241 6.53325 6.88863 7.05542 7.31357 7.44727 7.50430 7.51514 7.67348 7.96518 8.64203 8.78581 9.12620 9.42500 10.92348 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.003437 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.876108 B = 8143.522486 C =10070.995975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.253 3.747 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.539 6.539 13 C 0.033 3.967 14 N -0.547 5.547 15 C 0.065 3.935 16 C -0.106 4.106 17 C -0.084 4.084 18 S -0.271 6.271 19 C -0.075 4.075 20 C 0.160 3.840 21 H 0.047 0.953 22 C -0.084 4.084 23 C -0.093 4.093 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.114 4.114 28 H 0.266 0.734 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.389 0.611 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.605 -20.220 -2.384 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.364 5.364 11 C 0.282 3.718 12 O -0.417 6.417 13 C -0.097 4.097 14 N -0.272 5.272 15 C -0.061 4.061 16 C -0.145 4.145 17 C -0.232 4.232 18 S -0.041 6.041 19 C -0.224 4.224 20 C 0.048 3.952 21 H 0.065 0.935 22 C -0.086 4.086 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.132 4.132 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.221 0.779 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.607 -21.027 -1.997 22.449 hybrid contribution 0.947 1.980 -0.352 2.223 sum 8.553 -19.047 -2.350 21.011 Atomic orbital electron populations 1.69969 1.06096 1.27274 1.48975 1.24939 0.94893 0.99410 0.94707 0.86436 0.79651 0.82718 0.78237 1.20458 1.21004 1.19753 1.21233 0.93252 0.90522 1.53120 0.91971 1.19054 0.88229 0.81916 0.97572 1.46459 1.11035 1.06154 1.72741 1.20295 0.89588 0.84094 0.77800 1.90640 1.16517 1.84561 1.49985 1.22182 0.95621 0.88835 1.03075 1.57513 1.24678 1.00838 1.44122 1.22323 0.91441 1.02345 0.90034 1.21987 0.98420 0.91322 1.02820 1.24136 0.94717 0.99070 1.05274 1.86104 1.22176 1.59273 1.36595 1.23704 1.01378 0.99346 0.97936 1.19388 0.90821 0.90305 0.94714 0.93503 1.19828 0.93755 0.99294 0.95767 1.21179 1.00796 0.96852 0.92304 1.21235 0.93868 1.00045 0.98850 1.21178 0.95685 0.98668 0.98210 1.21077 0.99564 0.99548 0.93922 1.21004 0.92953 1.00399 0.98871 0.92471 0.95697 0.95632 0.77909 0.87652 0.92667 0.91644 0.89518 0.89731 0.90413 0.90265 0.88330 0.88741 0.87646 0.84955 0.85963 0.86262 0.86201 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 10 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 11 C 0.50 9.46 7.14 -10.98 -0.08 9.38 16 12 O -0.54 -11.89 13.79 5.56 0.08 -11.82 16 13 C 0.03 0.47 4.85 -4.98 -0.02 0.45 16 14 N -0.55 -7.21 2.52 -234.29 -0.59 -7.80 16 15 C 0.07 0.90 4.63 -4.37 -0.02 0.88 16 16 C -0.11 -1.39 5.12 -26.46 -0.14 -1.52 16 17 C -0.08 -0.90 6.65 37.93 0.25 -0.65 16 18 S -0.27 -3.03 20.05 -107.50 -2.16 -5.18 16 19 C -0.07 -0.78 5.32 38.25 0.20 -0.58 16 20 C 0.16 1.79 1.91 -71.59 -0.14 1.66 16 21 H 0.05 0.54 7.98 -51.93 -0.41 0.13 16 22 C -0.08 -0.91 3.48 -104.62 -0.36 -1.27 16 23 C -0.09 -1.07 7.38 -39.59 -0.29 -1.37 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.09 9.67 -39.58 -0.38 -1.48 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 32 H 0.11 1.44 4.88 -51.92 -0.25 1.19 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.85 6.04 -51.36 -0.31 0.54 16 35 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 36 H 0.08 1.23 7.44 -51.93 -0.39 0.85 16 37 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.05 7.88 -51.80 -0.41 0.64 16 41 H 0.11 0.99 8.10 -51.79 -0.42 0.57 16 42 H 0.13 1.72 7.69 -52.48 -0.40 1.31 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.98 8.04 -52.49 -0.42 0.56 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -30.20 373.66 -11.28 -41.48 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.00 Total: 8.10 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.62 Total: -5.92 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.20 Total: -48.02 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.16 Total: -5.18 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.20 -11.28 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880387103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.735 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds