Wall clock time and date at job start Tue Mar 31 2020 18:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47222 * 180.02562 * 13 11 10 15 15 C 1.46835 * 111.00293 * 302.30644 * 14 13 11 16 16 C 1.52002 * 104.50660 * 134.27910 * 15 14 13 17 17 C 1.54479 * 108.53732 * 106.30704 * 16 15 14 18 18 S 1.82355 * 110.14936 * 321.24508 * 17 16 15 19 19 C 1.79572 * 106.38221 * 319.48192 * 18 17 16 20 20 C 1.39459 * 111.00099 * 169.99582 * 14 13 11 21 21 H 1.09006 * 109.36659 * 73.29076 * 20 14 13 22 22 C 1.50700 * 109.36848 * 313.54038 * 20 14 13 23 23 C 1.38229 * 120.00362 * 319.72455 * 22 20 14 24 24 C 1.38233 * 120.00269 * 179.78584 * 23 22 20 25 25 C 1.38240 * 119.99812 * 0.44296 * 24 23 22 26 26 C 1.38231 * 119.99940 * 359.81198 * 25 24 23 27 27 C 1.38240 * 120.00247 * 359.97438 * 26 25 24 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 30 30 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 31 31 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 32 32 H 1.09009 * 109.46601 * 300.00167 * 13 11 10 33 33 H 1.08998 * 109.47474 * 59.99965 * 13 11 10 34 34 H 1.09001 * 110.41940 * 253.02284 * 15 14 13 35 35 H 1.09004 * 110.41717 * 15.53234 * 15 14 13 36 36 H 1.09000 * 109.62544 * 346.58823 * 16 15 14 37 37 H 1.09008 * 109.62260 * 226.02074 * 16 15 14 38 38 H 1.08998 * 109.35256 * 201.04036 * 17 16 15 39 39 H 1.08999 * 109.35916 * 81.45494 * 17 16 15 40 40 H 1.08997 * 109.41519 * 327.78007 * 19 18 17 41 41 H 1.09005 * 109.36343 * 207.94679 * 19 18 17 42 42 H 1.08004 * 119.99830 * 0.02562 * 23 22 20 43 43 H 1.08003 * 120.00135 * 180.27728 * 24 23 22 44 44 H 1.07997 * 120.00029 * 179.83342 * 25 24 23 45 45 H 1.08001 * 120.00228 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00445 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 7 1.9989 -7.3008 0.0253 15 6 1.1002 -7.3857 1.1834 16 6 -0.2122 -7.8950 0.6103 17 6 -0.3890 -9.3724 1.0257 18 16 1.2131 -10.2406 0.9558 19 6 2.0436 -9.6527 -0.5239 20 6 2.8597 -8.3756 -0.1957 21 1 3.4585 -8.5490 0.6985 22 6 3.7706 -8.0565 -1.3531 23 6 3.2720 -7.4064 -2.4663 24 6 4.1085 -7.1098 -3.5261 25 6 5.4418 -7.4715 -3.4764 26 6 5.9393 -8.1264 -2.3653 27 6 5.1037 -8.4191 -1.3037 28 1 -0.4850 0.8400 0.0004 29 1 0.6245 -2.5529 0.8956 30 1 0.6244 -2.5609 -0.8844 31 1 3.1568 -3.4352 0.0096 32 1 3.3606 -5.9746 -0.8690 33 1 3.3595 -5.9671 0.9110 34 1 1.4925 -8.0885 1.9185 35 1 0.9632 -6.4014 1.6314 36 1 -0.1905 -7.8204 -0.4769 37 1 -1.0381 -7.3026 1.0043 38 1 -1.0922 -9.8565 0.3479 39 1 -0.7805 -9.4177 2.0420 40 1 1.3017 -9.4223 -1.2884 41 1 2.7157 -10.4274 -0.8930 42 1 2.2295 -7.1267 -2.5066 43 1 3.7199 -6.5978 -4.3940 44 1 6.0948 -7.2422 -4.3055 45 1 6.9809 -8.4094 -2.3266 46 1 5.4923 -8.9311 -0.4358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880387103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:35 Heat of formation + Delta-G solvation = -6.062855 kcal Electronic energy + Delta-G solvation = -27066.254613 eV Core-core repulsion = 23467.716756 eV Total energy + Delta-G solvation = -3598.537857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65386 -40.10676 -38.59423 -36.07045 -34.91420 -34.29083 -32.90694 -31.71697 -30.76499 -29.65930 -27.88155 -26.68762 -24.57273 -24.00748 -23.49871 -22.28208 -21.47862 -20.98392 -18.95211 -18.20839 -17.63526 -17.43254 -17.07886 -16.88547 -16.50048 -16.27311 -16.08007 -15.64572 -15.26177 -15.18076 -15.08524 -14.56695 -14.48871 -14.26526 -14.19224 -13.93718 -13.67959 -13.55848 -13.48785 -13.05734 -12.89742 -12.75821 -12.75134 -12.53561 -12.23434 -11.94144 -11.87795 -11.79432 -11.74927 -11.48150 -10.79455 -10.72647 -10.58767 -9.77612 -9.76750 -9.58306 -9.19325 -8.55268 -8.29247 -6.45489 0.40047 0.54057 0.73973 1.42489 1.44515 1.55719 1.66441 1.82738 2.27292 2.45590 2.85629 2.98427 3.05735 3.61592 3.82614 3.86941 3.96612 4.02433 4.09052 4.20953 4.22857 4.29989 4.32860 4.40333 4.43628 4.49755 4.58894 4.61793 4.67672 4.75827 4.87581 4.92414 5.08347 5.11884 5.13911 5.22135 5.26289 5.35925 5.49989 5.59503 5.67726 5.69254 5.72007 5.85987 5.98060 6.13808 6.48401 6.65769 6.96372 7.24139 7.53850 8.82751 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.003437 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.876108 B = 8143.522486 C =10070.995975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.272 3.728 10 N -0.712 5.712 11 C 0.496 3.504 12 O -0.573 6.573 13 C 0.051 3.949 14 N -0.552 5.552 15 C 0.071 3.929 16 C -0.100 4.100 17 C -0.077 4.077 18 S -0.273 6.273 19 C -0.068 4.068 20 C 0.163 3.837 21 H 0.054 0.946 22 C -0.090 4.090 23 C -0.109 4.109 24 C -0.134 4.134 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.268 0.732 29 H -0.013 1.013 30 H -0.014 1.014 31 H 0.404 0.596 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 -21.124 -2.373 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.594 4.594 8 H 0.099 0.901 9 C 0.149 3.851 10 N -0.363 5.363 11 C 0.283 3.717 12 O -0.452 6.452 13 C -0.079 4.079 14 N -0.277 5.277 15 C -0.056 4.056 16 C -0.140 4.140 17 C -0.225 4.225 18 S -0.043 6.043 19 C -0.217 4.217 20 C 0.051 3.949 21 H 0.072 0.928 22 C -0.092 4.092 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.131 4.131 28 H 0.077 0.923 29 H 0.005 0.995 30 H 0.004 0.996 31 H 0.239 0.761 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.143 0.857 44 H 0.157 0.843 45 H 0.164 0.836 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.954 -21.972 -1.990 24.632 hybrid contribution -0.109 2.183 -0.396 2.222 sum 10.845 -19.789 -2.386 22.692 Atomic orbital electron populations 1.70131 1.08216 1.28495 1.50052 1.26023 0.95736 1.03772 0.93884 0.85201 0.78542 0.77163 0.78597 1.19626 1.20944 1.17973 1.21620 0.94226 0.90733 1.52781 0.90060 1.18459 0.88528 0.84168 0.93896 1.46200 1.10990 1.05645 1.73424 1.21164 0.90024 0.84530 0.76018 1.90628 1.18565 1.85045 1.51010 1.22023 0.94138 0.87206 1.04533 1.57455 1.25258 1.01063 1.43935 1.22204 0.92061 1.00877 0.90440 1.21837 0.97671 0.93030 1.01416 1.24059 0.95144 0.97080 1.06203 1.86108 1.22202 1.59141 1.36895 1.23685 1.01277 0.99424 0.97321 1.19419 0.90642 0.89582 0.95224 0.92820 1.19771 0.94360 0.99910 0.95199 1.21043 0.99928 0.98301 0.93475 1.21370 0.94618 1.00449 0.98760 1.21458 0.95257 0.98064 0.99105 1.21418 1.00757 0.98463 0.93220 1.21236 0.92225 0.99941 0.99739 0.92294 0.99531 0.99646 0.76071 0.86337 0.90653 0.90357 0.92548 0.91589 0.92036 0.89272 0.87146 0.89722 0.86043 0.87333 0.85710 0.84261 0.83625 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.56 -30.23 9.28 25.60 0.24 -30.00 16 8 H 0.08 4.02 7.60 -2.91 -0.02 3.99 16 9 C 0.27 14.90 5.43 85.63 0.46 15.36 16 10 N -0.71 -30.03 5.55 -466.79 -2.59 -32.62 16 11 C 0.50 19.47 7.14 87.66 0.63 20.10 16 12 O -0.57 -26.81 13.79 -3.01 -0.04 -26.85 16 13 C 0.05 1.43 4.85 85.56 0.41 1.84 16 14 N -0.55 -14.49 2.52 -895.16 -2.26 -16.74 16 15 C 0.07 1.99 4.63 85.99 0.40 2.39 16 16 C -0.10 -2.72 5.12 30.77 0.16 -2.56 16 17 C -0.08 -1.61 6.65 72.48 0.48 -1.13 16 18 S -0.27 -5.68 20.05 -56.49 -1.13 -6.81 16 19 C -0.07 -1.34 5.32 72.69 0.39 -0.95 16 20 C 0.16 3.41 1.91 46.22 0.09 3.50 16 21 H 0.05 1.09 7.98 -2.38 -0.02 1.07 16 22 C -0.09 -1.79 3.48 -19.87 -0.07 -1.86 16 23 C -0.11 -2.47 7.38 22.27 0.16 -2.31 16 24 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 25 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 26 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 27 C -0.11 -1.82 9.67 22.27 0.22 -1.60 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 31 H 0.40 14.39 8.32 -92.71 -0.77 13.61 16 32 H 0.12 3.12 4.88 -2.38 -0.01 3.10 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.97 6.04 -2.75 -0.02 1.96 16 35 H 0.06 1.93 5.88 -2.39 -0.01 1.91 16 36 H 0.07 2.03 7.44 -2.39 -0.02 2.02 16 37 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.08 1.86 7.88 -2.47 -0.02 1.84 16 41 H 0.12 2.02 8.10 -2.47 -0.02 2.00 16 42 H 0.11 2.95 7.69 -2.91 -0.02 2.93 16 43 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.14 1.71 8.04 -2.91 -0.02 1.68 16 Total: -1.00 -68.02 373.66 1.19 -66.83 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.21 Total: 29.89 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.70 Total: -2.21 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.56 Total: -105.15 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.04 Total: -26.85 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -5.68 SS G_CDS: -1.13 Total: -6.81 kcal Total: -68.02 1.19 -66.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880387103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.765 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds