Wall clock time and date at job start Tue Mar 31 2020 18:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00353 * 2 1 4 4 H 1.48496 * 109.47488 * 270.00776 * 3 2 1 5 5 H 1.48508 * 109.46632 * 30.00656 * 3 2 1 6 6 H 1.48502 * 109.47022 * 149.99889 * 3 2 1 7 7 C 1.37874 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00123 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47358 * 180.02562 * 13 11 10 15 15 C 1.47454 * 110.99890 * 286.14475 * 14 13 11 16 16 C 1.49437 * 110.71920 * 187.26619 * 15 14 13 17 17 C 1.52400 * 105.29613 * 98.78984 * 16 15 14 18 18 S 1.74766 * 114.52961 * 269.47569 * 17 16 15 19 19 C 1.85012 * 101.65291 * 61.32008 * 18 17 16 20 20 C 1.49107 * 110.88615 * 151.82791 * 14 13 11 21 21 H 1.09002 * 107.82608 * 205.87474 * 20 14 13 22 22 C 1.50704 * 108.19459 * 322.16569 * 20 14 13 23 23 C 1.38232 * 120.00283 * 90.80115 * 22 20 14 24 24 C 1.38227 * 120.00144 * 179.80915 * 23 22 20 25 25 C 1.38232 * 120.00086 * 0.42855 * 24 23 22 26 26 C 1.38231 * 119.99967 * 359.80261 * 25 24 23 27 27 C 1.38233 * 120.00146 * 0.02562 * 26 25 24 28 28 H 0.96994 * 119.99793 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47068 * 60.00463 * 9 7 2 30 30 H 1.08995 * 109.47324 * 299.99910 * 9 7 2 31 31 H 0.96998 * 120.00103 * 0.02562 * 10 9 7 32 32 H 1.08998 * 109.47131 * 60.00021 * 13 11 10 33 33 H 1.09000 * 109.46914 * 299.99923 * 13 11 10 34 34 H 1.09001 * 109.22865 * 66.94297 * 15 14 13 35 35 H 1.09007 * 109.22874 * 307.58401 * 15 14 13 36 36 H 1.08999 * 110.27654 * 339.84792 * 16 15 14 37 37 H 1.09001 * 110.27546 * 217.72688 * 16 15 14 38 38 H 1.09002 * 108.47854 * 148.16724 * 17 16 15 39 39 H 1.08999 * 108.34734 * 30.68656 * 17 16 15 40 40 H 1.09002 * 109.58618 * 52.60586 * 19 18 17 41 41 H 1.09002 * 109.58220 * 172.88620 * 19 18 17 42 42 H 1.08002 * 119.99475 * 0.02562 * 23 22 20 43 43 H 1.08003 * 119.99976 * 180.20618 * 24 23 22 44 44 H 1.08004 * 120.00183 * 179.78917 * 25 24 23 45 45 H 1.07998 * 120.00186 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00273 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5612 -5.1050 -0.0006 13 6 2.7329 -6.0288 -0.0022 14 7 1.9984 -7.3011 -0.0023 15 6 1.4032 -7.5677 1.3202 16 6 0.8091 -8.9381 1.3660 17 6 1.8550 -9.8069 2.0545 18 16 2.9982 -10.5627 0.9700 19 6 3.8058 -9.0906 0.1931 20 6 2.7959 -8.3753 -0.6606 21 1 2.0989 -9.1174 -1.0498 22 6 3.5242 -7.7695 -1.8327 23 6 4.7946 -7.2512 -1.6642 24 6 5.4641 -6.6991 -2.7402 25 6 4.8597 -6.6573 -3.9827 26 6 3.5875 -7.1712 -4.1502 27 6 2.9193 -7.7265 -3.0750 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 3.1566 -3.4355 -0.0021 32 1 3.3602 -5.9711 0.8874 33 1 3.3590 -5.9711 -0.8926 34 1 0.6238 -6.8318 1.5180 35 1 2.1758 -7.4856 2.0848 36 1 0.6212 -9.3023 0.3560 37 1 -0.1149 -8.9301 1.9441 38 1 1.3409 -10.5885 2.6138 39 1 2.4069 -9.1855 2.7596 40 1 4.1675 -8.4189 0.9716 41 1 4.6419 -9.4167 -0.4256 42 1 5.2653 -7.2808 -0.6927 43 1 6.4579 -6.2972 -2.6093 44 1 5.3815 -6.2228 -4.8227 45 1 3.1152 -7.1381 -5.1208 46 1 1.9251 -8.1277 -3.2057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880387104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:39 Heat of formation + Delta-G solvation = 7.764022 kcal Electronic energy + Delta-G solvation = -27019.023608 eV Core-core repulsion = 23421.085329 eV Total energy + Delta-G solvation = -3597.938279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40363 -38.68448 -37.44908 -34.35701 -34.10237 -32.32533 -32.03458 -31.08767 -29.58995 -28.11882 -26.67448 -25.44141 -23.76220 -22.71696 -22.19089 -21.76993 -19.87600 -19.37204 -17.65173 -17.17895 -16.63378 -16.31127 -15.83939 -15.43233 -15.16024 -15.08932 -14.86456 -14.51422 -14.49369 -14.13289 -13.67625 -13.64645 -13.44086 -13.27209 -13.01936 -12.65457 -12.51444 -12.34186 -11.99793 -11.92360 -11.79745 -11.40802 -11.14053 -11.05976 -11.00324 -10.94702 -10.90246 -10.78566 -10.30639 -10.01074 -9.38216 -9.10993 -8.97124 -8.77031 -8.71434 -8.19341 -7.84535 -7.79355 -6.15804 -4.22485 1.16195 1.29569 1.51687 2.25254 3.23917 3.29499 3.31713 3.35647 3.47929 3.80653 4.25854 4.38162 4.44453 4.50468 4.56078 4.63374 4.84023 4.87823 4.92515 5.01274 5.15339 5.19756 5.20171 5.32326 5.35326 5.40698 5.45063 5.48296 5.58726 5.62884 5.65013 5.72363 5.85258 5.93133 6.03897 6.14687 6.32465 6.42134 6.47706 6.86171 6.91186 7.16587 7.35082 7.50172 7.54848 7.70132 7.99033 8.68396 8.82016 9.19101 9.44631 10.94420 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.003338 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.364961 B = 8385.966848 C = 9923.047567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.253 3.747 10 N -0.717 5.717 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.024 3.976 14 N -0.532 5.532 15 C 0.068 3.932 16 C -0.119 4.119 17 C -0.124 4.124 18 S -0.234 6.234 19 C -0.098 4.098 20 C 0.136 3.864 21 H 0.100 0.900 22 C -0.080 4.080 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.093 4.093 28 H 0.265 0.735 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.388 0.612 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 -20.201 -1.936 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.366 5.366 11 C 0.283 3.717 12 O -0.417 6.417 13 C -0.107 4.107 14 N -0.257 5.257 15 C -0.058 4.058 16 C -0.159 4.159 17 C -0.273 4.273 18 S -0.005 6.005 19 C -0.248 4.248 20 C 0.028 3.972 21 H 0.118 0.882 22 C -0.082 4.082 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.112 4.112 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.354 -21.316 -2.270 23.388 hybrid contribution 1.300 2.385 0.876 2.855 sum 10.655 -18.930 -1.394 21.767 Atomic orbital electron populations 1.69976 1.06090 1.27239 1.48987 1.24949 0.94902 0.99403 0.94757 0.86435 0.79625 0.82736 0.78227 1.20454 1.21011 1.19776 1.21232 0.93217 0.90520 1.53069 0.91997 1.19048 0.88267 0.81927 0.97560 1.46436 1.10900 1.06148 1.73132 1.20356 0.89617 0.83979 0.77727 1.90628 1.16616 1.84631 1.49783 1.22316 0.95770 0.89317 1.03254 1.60398 1.37454 1.01036 1.26792 1.21832 0.98655 0.98283 0.87002 1.21288 0.97674 0.94442 1.02452 1.22876 0.99921 1.03945 1.00566 1.86328 1.45659 1.15259 1.53296 1.24215 1.01296 0.97058 1.02189 1.20812 0.92546 0.92818 0.91063 0.88209 1.19760 0.94367 0.99484 0.94582 1.21072 0.94695 0.99210 0.99056 1.21105 1.00051 0.99698 0.92878 1.21188 0.95528 0.99350 0.97476 1.21194 0.94995 0.98259 0.99018 1.21071 0.99541 0.98593 0.91977 0.92482 0.95661 0.95747 0.78044 0.92916 0.86946 0.88427 0.95371 0.88960 0.89646 0.87974 0.90118 0.89827 0.86651 0.86164 0.85950 0.86073 0.85905 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 10 N -0.72 -15.26 5.55 -61.47 -0.34 -15.60 16 11 C 0.50 10.04 7.64 -10.99 -0.08 9.96 16 12 O -0.54 -12.93 14.95 5.55 0.08 -12.84 16 13 C 0.02 0.35 5.08 -4.97 -0.03 0.33 16 14 N -0.53 -7.21 3.94 -230.95 -0.91 -8.11 16 15 C 0.07 0.89 4.88 -5.28 -0.03 0.86 16 16 C -0.12 -1.26 5.77 -28.80 -0.17 -1.43 16 17 C -0.12 -1.16 5.49 36.85 0.20 -0.96 16 18 S -0.23 -2.33 21.75 -107.50 -2.34 -4.66 16 19 C -0.10 -0.91 4.61 35.83 0.17 -0.74 16 20 C 0.14 1.48 1.81 -68.96 -0.13 1.35 16 21 H 0.10 1.14 6.62 -51.93 -0.34 0.79 16 22 C -0.08 -0.87 3.41 -104.62 -0.36 -1.23 16 23 C -0.12 -1.19 6.54 -39.59 -0.26 -1.45 16 24 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 25 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 26 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 27 C -0.09 -1.05 9.66 -39.58 -0.38 -1.44 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 32 H 0.05 0.69 7.89 -51.93 -0.41 0.28 16 33 H 0.11 1.55 4.12 -51.93 -0.21 1.34 16 34 H 0.10 1.58 6.69 -51.93 -0.35 1.23 16 35 H 0.03 0.34 6.56 -51.93 -0.34 0.00 16 36 H 0.09 1.05 6.64 -51.93 -0.34 0.70 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.85 8.14 -48.77 -0.40 0.45 16 39 H 0.08 0.76 6.87 -48.77 -0.34 0.42 16 40 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.12 0.96 7.11 -51.93 -0.37 0.59 16 42 H 0.12 1.00 7.10 -52.49 -0.37 0.62 16 43 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -32.12 372.22 -11.60 -43.72 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.73 Total: 7.63 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.69 Total: -6.14 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.51 Total: -49.18 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.34 Total: -4.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.12 -11.60 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880387104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.487 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds