Wall clock time and date at job start Tue Mar 31 2020 18:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00353 * 2 1 4 4 H 1.48496 * 109.47488 * 270.00776 * 3 2 1 5 5 H 1.48508 * 109.46632 * 30.00656 * 3 2 1 6 6 H 1.48502 * 109.47022 * 149.99889 * 3 2 1 7 7 C 1.37874 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00014 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00123 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47358 * 180.02562 * 13 11 10 15 15 C 1.47454 * 110.99890 * 286.14475 * 14 13 11 16 16 C 1.49437 * 110.71920 * 187.26619 * 15 14 13 17 17 C 1.52400 * 105.29613 * 98.78984 * 16 15 14 18 18 S 1.74766 * 114.52961 * 269.47569 * 17 16 15 19 19 C 1.85012 * 101.65291 * 61.32008 * 18 17 16 20 20 C 1.49107 * 110.88615 * 151.82791 * 14 13 11 21 21 H 1.09002 * 107.82608 * 205.87474 * 20 14 13 22 22 C 1.50704 * 108.19459 * 322.16569 * 20 14 13 23 23 C 1.38232 * 120.00283 * 90.80115 * 22 20 14 24 24 C 1.38227 * 120.00144 * 179.80915 * 23 22 20 25 25 C 1.38232 * 120.00086 * 0.42855 * 24 23 22 26 26 C 1.38231 * 119.99967 * 359.80261 * 25 24 23 27 27 C 1.38233 * 120.00146 * 0.02562 * 26 25 24 28 28 H 0.96994 * 119.99793 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47068 * 60.00463 * 9 7 2 30 30 H 1.08995 * 109.47324 * 299.99910 * 9 7 2 31 31 H 0.96998 * 120.00103 * 0.02562 * 10 9 7 32 32 H 1.08998 * 109.47131 * 60.00021 * 13 11 10 33 33 H 1.09000 * 109.46914 * 299.99923 * 13 11 10 34 34 H 1.09001 * 109.22865 * 66.94297 * 15 14 13 35 35 H 1.09007 * 109.22874 * 307.58401 * 15 14 13 36 36 H 1.08999 * 110.27654 * 339.84792 * 16 15 14 37 37 H 1.09001 * 110.27546 * 217.72688 * 16 15 14 38 38 H 1.09002 * 108.47854 * 148.16724 * 17 16 15 39 39 H 1.08999 * 108.34734 * 30.68656 * 17 16 15 40 40 H 1.09002 * 109.58618 * 52.60586 * 19 18 17 41 41 H 1.09002 * 109.58220 * 172.88620 * 19 18 17 42 42 H 1.08002 * 119.99475 * 0.02562 * 23 22 20 43 43 H 1.08003 * 119.99976 * 180.20618 * 24 23 22 44 44 H 1.08004 * 120.00183 * 179.78917 * 25 24 23 45 45 H 1.07998 * 120.00186 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00273 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5612 -5.1050 -0.0006 13 6 2.7329 -6.0288 -0.0022 14 7 1.9984 -7.3011 -0.0023 15 6 1.4032 -7.5677 1.3202 16 6 0.8091 -8.9381 1.3660 17 6 1.8550 -9.8069 2.0545 18 16 2.9982 -10.5627 0.9700 19 6 3.8058 -9.0906 0.1931 20 6 2.7959 -8.3753 -0.6606 21 1 2.0989 -9.1174 -1.0498 22 6 3.5242 -7.7695 -1.8327 23 6 4.7946 -7.2512 -1.6642 24 6 5.4641 -6.6991 -2.7402 25 6 4.8597 -6.6573 -3.9827 26 6 3.5875 -7.1712 -4.1502 27 6 2.9193 -7.7265 -3.0750 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 3.1566 -3.4355 -0.0021 32 1 3.3602 -5.9711 0.8874 33 1 3.3590 -5.9711 -0.8926 34 1 0.6238 -6.8318 1.5180 35 1 2.1758 -7.4856 2.0848 36 1 0.6212 -9.3023 0.3560 37 1 -0.1149 -8.9301 1.9441 38 1 1.3409 -10.5885 2.6138 39 1 2.4069 -9.1855 2.7596 40 1 4.1675 -8.4189 0.9716 41 1 4.6419 -9.4167 -0.4256 42 1 5.2653 -7.2808 -0.6927 43 1 6.4579 -6.2972 -2.6093 44 1 5.3815 -6.2228 -4.8227 45 1 3.1152 -7.1381 -5.1208 46 1 1.9251 -8.1277 -3.2057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880387104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:38 Heat of formation + Delta-G solvation = -12.654034 kcal Electronic energy + Delta-G solvation = -27019.909001 eV Core-core repulsion = 23421.085329 eV Total energy + Delta-G solvation = -3598.823672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39513 -40.10112 -38.53214 -36.07198 -35.21738 -34.31472 -33.10754 -31.84719 -30.47385 -29.71081 -28.06556 -26.52047 -24.93950 -24.08548 -23.34694 -22.62861 -21.42963 -20.45338 -19.09357 -18.24256 -17.89391 -17.38043 -17.04123 -16.99773 -16.46972 -16.16878 -16.04760 -15.80926 -15.65679 -15.22703 -14.96571 -14.50473 -14.44666 -14.22677 -14.17418 -14.03252 -13.83799 -13.68495 -13.29628 -13.28477 -12.90234 -12.76703 -12.73192 -12.41168 -12.22989 -12.08360 -11.86814 -11.84642 -11.70872 -11.48418 -10.80954 -10.78651 -10.70121 -9.79732 -9.76882 -9.60919 -9.22350 -8.64864 -8.28934 -6.45660 0.37410 0.52037 0.76991 1.42560 1.45127 1.49903 1.56223 1.84431 2.19891 2.39921 2.82253 3.05780 3.09979 3.57769 3.62773 3.68450 3.81151 4.02170 4.11712 4.14841 4.17952 4.21775 4.30414 4.31763 4.41340 4.50435 4.52868 4.56486 4.62669 4.71316 4.81058 4.85984 5.05112 5.08216 5.11694 5.16761 5.18801 5.24966 5.50070 5.55905 5.66351 5.67893 5.70559 5.85591 5.91284 6.09862 6.18804 6.65663 6.97793 7.24137 7.56401 8.83262 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.003338 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.364961 B = 8385.966848 C = 9923.047567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.271 3.729 10 N -0.712 5.712 11 C 0.494 3.506 12 O -0.583 6.583 13 C 0.043 3.957 14 N -0.552 5.552 15 C 0.073 3.927 16 C -0.113 4.113 17 C -0.117 4.117 18 S -0.245 6.245 19 C -0.089 4.089 20 C 0.147 3.853 21 H 0.091 0.909 22 C -0.092 4.092 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.114 4.114 28 H 0.268 0.732 29 H -0.017 1.017 30 H -0.015 1.015 31 H 0.405 0.595 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.132 0.868 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.073 -20.317 -1.682 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.148 3.852 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.463 6.463 13 C -0.088 4.088 14 N -0.277 5.277 15 C -0.053 4.053 16 C -0.152 4.152 17 C -0.266 4.266 18 S -0.017 6.017 19 C -0.238 4.238 20 C 0.040 3.960 21 H 0.109 0.891 22 C -0.094 4.094 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.001 0.999 30 H 0.003 0.997 31 H 0.240 0.760 32 H 0.098 0.902 33 H 0.145 0.855 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.148 0.852 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.150 0.850 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.875 -21.477 -2.019 25.122 hybrid contribution 0.149 2.354 0.733 2.470 sum 13.024 -19.123 -1.285 23.173 Atomic orbital electron populations 1.70144 1.08299 1.28516 1.50033 1.26071 0.95762 1.03904 0.93868 0.85169 0.78539 0.76971 0.78619 1.19594 1.20984 1.17805 1.21614 0.94259 0.90578 1.52794 0.89866 1.18464 0.88624 0.84373 0.93740 1.46185 1.10954 1.05588 1.73538 1.21438 0.90082 0.84658 0.75741 1.90611 1.19130 1.85269 1.51337 1.22153 0.94090 0.87440 1.05114 1.60211 1.38679 1.01490 1.27342 1.21735 0.98020 0.98366 0.87205 1.21211 0.98413 0.93343 1.02277 1.22790 0.99455 1.04039 1.00299 1.86417 1.45844 1.15875 1.53555 1.24156 1.00857 0.96623 1.02172 1.20680 0.92586 0.91737 0.91046 0.89093 1.19815 0.95097 1.00284 0.94198 1.21306 0.94073 0.98574 1.00190 1.21447 1.00984 0.99016 0.92488 1.21504 0.95261 0.98908 0.98522 1.21410 0.95639 0.98409 0.99309 1.21197 0.99674 0.99541 0.92889 0.92291 0.99925 0.99697 0.75973 0.90200 0.85489 0.92345 0.94042 0.89908 0.89007 0.86718 0.89659 0.88981 0.85213 0.84135 0.83602 0.84266 0.84999 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.55 -30.37 9.28 25.60 0.24 -30.13 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 15.12 5.43 85.63 0.46 15.58 16 10 N -0.71 -30.66 5.55 -466.79 -2.59 -33.25 16 11 C 0.49 20.23 7.64 87.66 0.67 20.90 16 12 O -0.58 -29.43 14.95 -3.06 -0.05 -29.47 16 13 C 0.04 1.19 5.08 85.56 0.43 1.63 16 14 N -0.55 -14.67 3.94 -884.58 -3.48 -18.16 16 15 C 0.07 1.89 4.88 85.06 0.42 2.30 16 16 C -0.11 -2.35 5.77 29.26 0.17 -2.18 16 17 C -0.12 -1.99 5.49 71.78 0.39 -1.60 16 18 S -0.25 -4.41 21.75 -56.49 -1.23 -5.64 16 19 C -0.09 -1.42 4.61 71.12 0.33 -1.09 16 20 C 0.15 3.01 1.81 42.88 0.08 3.09 16 21 H 0.09 2.04 6.62 -2.39 -0.02 2.02 16 22 C -0.09 -1.87 3.41 -19.86 -0.07 -1.93 16 23 C -0.12 -2.05 6.54 22.27 0.15 -1.90 16 24 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 25 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 26 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 27 C -0.11 -2.56 9.66 22.27 0.22 -2.34 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.41 14.44 8.32 -92.71 -0.77 13.67 16 32 H 0.08 1.85 7.89 -2.39 -0.02 1.83 16 33 H 0.13 3.25 4.12 -2.39 -0.01 3.24 16 34 H 0.06 1.98 6.69 -2.39 -0.02 1.96 16 35 H 0.04 0.95 6.56 -2.38 -0.02 0.93 16 36 H 0.08 1.89 6.64 -2.39 -0.02 1.87 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.11 1.69 8.14 -4.39 -0.04 1.65 16 39 H 0.08 1.40 6.87 -4.40 -0.03 1.37 16 40 H 0.09 1.36 8.07 -2.39 -0.02 1.35 16 41 H 0.13 1.76 7.11 -2.39 -0.02 1.74 16 42 H 0.14 1.74 7.10 -2.91 -0.02 1.72 16 43 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -72.81 372.22 -0.23 -73.04 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.19 Total: 28.55 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.62 Total: -3.07 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -5.79 Total: -107.75 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.05 Total: -29.47 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -1.23 Total: -5.64 kcal Total: -72.81 -0.23 -73.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880387104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.389 kcal (2) G-P(sol) polarization free energy of solvation -72.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds