Wall clock time and date at job start Tue Mar 31 2020 17:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 117.00038 * 2 1 4 4 C 1.38805 * 120.43588 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.83426 * 180.02562 * 4 3 2 6 6 C 1.31825 * 121.84753 * 359.97438 * 5 4 3 7 7 C 1.38875 * 120.78499 * 359.97438 * 6 5 4 8 8 N 1.39972 * 120.45321 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99627 * 154.11700 * 8 7 6 10 10 O 1.21583 * 120.00175 * 354.20655 * 9 8 7 11 11 N 1.34781 * 119.99715 * 174.20195 * 9 8 7 12 12 C 1.46963 * 120.59181 * 185.26930 * 11 9 8 13 13 C 1.53380 * 108.63517 * 235.25212 * 12 11 9 14 14 N 1.46963 * 108.63101 * 310.57828 * 13 12 11 15 15 C 1.34785 * 120.59127 * 235.20027 * 14 13 12 16 16 O 1.21687 * 119.99503 * 5.30410 * 15 14 13 17 17 C 1.46374 * 119.99740 * 185.29714 * 15 14 13 18 18 H 1.07991 * 120.00159 * 354.97040 * 17 15 14 19 19 C 1.40050 * 119.99575 * 174.69997 * 17 15 14 20 20 N 1.30671 * 120.00238 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00009 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46916 * 89.99796 * 21 19 17 23 23 H 1.48497 * 109.47500 * 210.00005 * 21 19 17 24 24 H 1.48500 * 109.47156 * 330.00240 * 21 19 17 25 25 C 1.46962 * 118.81299 * 55.47683 * 14 13 12 26 26 C 1.46962 * 120.59594 * 5.29825 * 11 9 8 27 27 C 1.38969 * 120.43803 * 180.28160 * 3 2 1 28 28 H 1.09006 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47529 * 299.99880 * 1 2 3 30 30 H 1.09003 * 109.47265 * 60.00085 * 1 2 3 31 31 H 1.07995 * 119.58399 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.60277 * 180.02562 * 6 5 4 33 33 H 0.96995 * 120.00258 * 334.11632 * 8 7 6 34 34 H 1.08997 * 109.61116 * 115.50766 * 12 11 9 35 35 H 1.08998 * 109.61305 * 354.99538 * 12 11 9 36 36 H 1.09000 * 109.60710 * 190.83541 * 13 12 11 37 37 H 1.08997 * 109.74550 * 70.40392 * 13 12 11 38 38 H 0.96996 * 120.00156 * 179.97438 * 20 19 17 39 39 H 1.09000 * 109.61054 * 64.27086 * 25 14 13 40 40 H 1.09007 * 109.60717 * 184.77491 * 25 14 13 41 41 H 1.08995 * 109.60717 * 244.49515 * 26 11 9 42 42 H 1.09006 * 109.60809 * 4.83002 * 26 11 9 43 43 H 1.08005 * 120.84209 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2989 2.3808 -0.0005 5 7 1.8891 3.5594 -0.0010 6 6 3.2018 3.6799 -0.0006 7 6 4.0187 2.5568 0.0010 8 7 5.4118 2.6928 0.0021 9 6 6.1841 1.7136 0.5130 10 8 5.6705 0.7612 1.0675 11 7 7.5257 1.7901 0.4093 12 6 8.3751 0.6778 0.8578 13 6 9.3901 1.2153 1.8745 14 7 10.0296 2.4126 1.3113 15 6 11.3714 2.4895 1.2085 16 8 12.0594 1.5270 1.4929 17 6 12.0006 3.7307 0.7546 18 1 11.3887 4.5571 0.4249 19 6 13.3962 3.8484 0.7534 20 7 14.1364 2.8504 1.1578 21 14 14.1994 5.4320 0.1735 22 1 14.3712 6.3512 1.3271 23 1 15.5268 5.1263 -0.4178 24 1 13.3385 6.0778 -0.8499 25 6 9.1804 3.5271 0.8680 26 6 8.1654 2.9874 -0.1537 27 6 3.4331 1.2943 -0.0059 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2204 2.3246 -0.0005 32 1 3.6472 4.6637 -0.0006 33 1 5.8214 3.4918 -0.3649 34 1 8.9027 0.2530 0.0039 35 1 7.7576 -0.0879 1.3273 36 1 10.1462 0.4557 2.0730 37 1 8.8799 1.4750 2.8020 38 1 15.1030 2.9319 1.1566 39 1 8.6532 3.9483 1.7240 40 1 9.7982 4.2947 0.4018 41 1 8.6779 2.7270 -1.0797 42 1 7.4088 3.7458 -0.3552 43 1 4.0415 0.4018 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880546056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:51 Heat of formation + Delta-G solvation = -31.141474 kcal Electronic energy + Delta-G solvation = -28376.876817 eV Core-core repulsion = 24230.958255 eV Total energy + Delta-G solvation = -4145.918562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.31900 -40.25777 -38.59372 -37.99764 -36.05493 -35.24946 -33.24677 -32.57557 -31.77975 -31.09131 -29.74274 -27.81650 -27.38701 -26.05735 -24.19454 -23.52790 -23.02964 -22.02165 -20.34761 -19.51087 -18.73455 -18.04338 -17.15597 -16.98647 -16.40395 -16.35525 -16.13212 -15.81644 -15.46868 -15.04989 -14.56356 -14.46688 -14.29640 -14.23676 -14.09359 -13.83976 -13.44941 -13.11667 -12.86368 -12.64934 -12.22093 -12.11169 -11.85166 -11.75032 -11.50638 -11.27227 -11.22407 -11.10136 -11.03830 -10.80205 -10.37337 -10.29941 -10.16934 -9.68536 -9.05174 -8.98030 -8.80096 -8.35625 -7.72726 -7.34673 -6.31291 -4.77694 0.84815 1.10479 2.30074 2.87202 2.97926 3.06207 3.13395 3.15974 3.60044 3.63535 3.97989 4.29263 4.34311 4.43651 4.44651 4.67315 4.76236 4.79122 4.87730 4.99591 5.04308 5.14602 5.17829 5.34899 5.49317 5.51535 5.64912 5.74363 5.78493 5.84745 5.93378 6.01768 6.18240 6.26180 6.43041 6.45454 6.52503 6.76033 6.96399 7.32973 7.41082 7.65427 7.69583 7.96829 8.18689 8.33118 8.90083 9.26853 10.44316 10.62810 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.002307 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.643025 B =12135.627677 C =12970.161419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.101 3.899 4 C -0.014 4.014 5 N -0.427 5.427 6 C 0.030 3.970 7 C 0.169 3.831 8 N -0.679 5.679 9 C 0.705 3.295 10 O -0.574 6.574 11 N -0.613 5.613 12 C 0.116 3.884 13 C 0.106 3.894 14 N -0.643 5.643 15 C 0.559 3.441 16 O -0.574 6.574 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.087 3.913 20 N -0.765 5.765 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.110 3.890 26 C 0.092 3.908 27 C -0.125 4.125 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.270 0.730 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.706 1.386 -5.030 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.053 3.947 4 C -0.173 4.173 5 N -0.136 5.136 6 C -0.132 4.132 7 C 0.070 3.930 8 N -0.329 5.329 9 C 0.407 3.593 10 O -0.451 6.451 11 N -0.349 5.349 12 C -0.008 4.008 13 C -0.019 4.019 14 N -0.382 5.382 15 C 0.365 3.635 16 O -0.456 6.456 17 C -0.581 4.581 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.394 5.394 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.016 4.016 26 C -0.033 4.033 27 C -0.154 4.154 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.783 0.576 -4.435 23.218 hybrid contribution 0.833 0.714 -0.449 1.186 sum -21.950 1.290 -4.884 22.524 Atomic orbital electron populations 1.23128 0.78006 1.04359 1.01562 1.86110 1.21565 1.26060 1.88315 1.19892 0.92512 0.85613 0.96681 1.22772 1.00428 0.87158 1.06927 1.67467 1.10815 1.26244 1.09027 1.22369 0.88686 0.97466 1.04672 1.18346 0.83011 0.94062 0.97614 1.42809 1.03714 1.22752 1.63581 1.15821 0.81624 0.82569 0.79243 1.90901 1.72298 1.33822 1.48070 1.47343 1.03131 1.19643 1.64775 1.22075 0.91964 0.87896 0.98852 1.21544 0.95082 0.91008 0.94262 1.48194 1.06711 1.15562 1.67696 1.18300 0.78161 0.89286 0.77747 1.90605 1.60734 1.39337 1.54951 1.20928 0.91413 0.99106 1.46697 0.90887 1.25734 0.97445 0.96989 0.93132 1.69998 1.05653 1.29942 1.33767 0.86373 0.78911 0.82064 0.79443 1.19704 1.20409 1.18838 1.21874 0.92444 0.91333 0.95937 1.22361 0.96272 0.86208 0.98422 1.21070 0.91959 0.98892 1.03511 0.87912 0.92339 0.92385 0.82577 0.82301 0.74879 0.91018 0.88620 0.88376 0.93363 0.91927 0.93318 0.87423 0.90223 0.90814 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.31 10.51 -19.44 -0.20 -3.52 16 3 C 0.10 1.18 6.71 -39.10 -0.26 0.92 16 4 C -0.01 -0.14 10.22 -17.35 -0.18 -0.32 16 5 N -0.43 -4.88 10.35 -12.96 -0.13 -5.02 16 6 C 0.03 0.31 11.10 -17.32 -0.19 0.12 16 7 C 0.17 2.00 6.42 -83.56 -0.54 1.46 16 8 N -0.68 -7.57 5.28 -14.14 -0.07 -7.64 16 9 C 0.71 10.18 8.10 -86.92 -0.70 9.47 16 10 O -0.57 -10.00 13.05 5.29 0.07 -9.93 16 11 N -0.61 -8.75 2.95 -177.95 -0.52 -9.27 16 12 C 0.12 1.83 6.60 -3.59 -0.02 1.80 16 13 C 0.11 1.98 6.60 -3.59 -0.02 1.95 16 14 N -0.64 -13.45 2.94 -173.87 -0.51 -13.96 16 15 C 0.56 14.90 7.61 -12.98 -0.10 14.80 16 16 O -0.57 -17.72 14.45 5.20 0.08 -17.65 16 17 C -0.55 -14.20 8.86 -35.63 -0.32 -14.51 16 18 H 0.07 1.68 5.66 -52.49 -0.30 1.39 16 19 C 0.09 2.30 5.50 -17.37 -0.10 2.21 16 20 N -0.77 -21.97 11.84 55.55 0.66 -21.31 16 21 Si 0.91 18.94 29.56 -169.99 -5.02 13.92 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 C 0.11 1.75 6.51 -3.37 -0.02 1.73 16 26 C 0.09 1.15 6.58 -3.37 -0.02 1.12 16 27 C -0.13 -1.66 8.76 -38.96 -0.34 -2.00 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.28 7.68 -51.93 -0.40 -0.11 16 30 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 31 H 0.16 1.17 6.31 -52.49 -0.33 0.84 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.41 3.33 6.27 -40.82 -0.26 3.07 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.48 6.99 -51.93 -0.36 1.12 16 36 H 0.10 2.03 6.99 -51.93 -0.36 1.67 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.11 1.75 5.34 -51.93 -0.28 1.48 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.63 5.61 -51.93 -0.29 0.33 16 43 H 0.16 2.46 6.01 -52.48 -0.32 2.15 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -36.07 353.23 -7.13 -43.20 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.96 Total: 5.95 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: -1.82 Total: 19.90 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.59 Total: -57.20 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.06 Total: -31.09 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.07 -7.13 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880546056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.061 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds