Wall clock time and date at job start Tue Mar 31 2020 17:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 117.00038 * 2 1 4 4 C 1.38805 * 120.43588 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.83426 * 180.02562 * 4 3 2 6 6 C 1.31825 * 121.84753 * 359.97438 * 5 4 3 7 7 C 1.38875 * 120.78499 * 359.97438 * 6 5 4 8 8 N 1.39972 * 120.45321 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99627 * 154.11700 * 8 7 6 10 10 O 1.21583 * 120.00175 * 354.20655 * 9 8 7 11 11 N 1.34781 * 119.99715 * 174.20195 * 9 8 7 12 12 C 1.46963 * 120.59181 * 185.26930 * 11 9 8 13 13 C 1.53380 * 108.63517 * 235.25212 * 12 11 9 14 14 N 1.46963 * 108.63101 * 310.57828 * 13 12 11 15 15 C 1.34785 * 120.59127 * 235.20027 * 14 13 12 16 16 O 1.21687 * 119.99503 * 5.30410 * 15 14 13 17 17 C 1.46374 * 119.99740 * 185.29714 * 15 14 13 18 18 H 1.07991 * 120.00159 * 354.97040 * 17 15 14 19 19 C 1.40050 * 119.99575 * 174.69997 * 17 15 14 20 20 N 1.30671 * 120.00238 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00009 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46916 * 89.99796 * 21 19 17 23 23 H 1.48497 * 109.47500 * 210.00005 * 21 19 17 24 24 H 1.48500 * 109.47156 * 330.00240 * 21 19 17 25 25 C 1.46962 * 118.81299 * 55.47683 * 14 13 12 26 26 C 1.46962 * 120.59594 * 5.29825 * 11 9 8 27 27 C 1.38969 * 120.43803 * 180.28160 * 3 2 1 28 28 H 1.09006 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47529 * 299.99880 * 1 2 3 30 30 H 1.09003 * 109.47265 * 60.00085 * 1 2 3 31 31 H 1.07995 * 119.58399 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.60277 * 180.02562 * 6 5 4 33 33 H 0.96995 * 120.00258 * 334.11632 * 8 7 6 34 34 H 1.08997 * 109.61116 * 115.50766 * 12 11 9 35 35 H 1.08998 * 109.61305 * 354.99538 * 12 11 9 36 36 H 1.09000 * 109.60710 * 190.83541 * 13 12 11 37 37 H 1.08997 * 109.74550 * 70.40392 * 13 12 11 38 38 H 0.96996 * 120.00156 * 179.97438 * 20 19 17 39 39 H 1.09000 * 109.61054 * 64.27086 * 25 14 13 40 40 H 1.09007 * 109.60717 * 184.77491 * 25 14 13 41 41 H 1.08995 * 109.60717 * 244.49515 * 26 11 9 42 42 H 1.09006 * 109.60809 * 4.83002 * 26 11 9 43 43 H 1.08005 * 120.84209 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2989 2.3808 -0.0005 5 7 1.8891 3.5594 -0.0010 6 6 3.2018 3.6799 -0.0006 7 6 4.0187 2.5568 0.0010 8 7 5.4118 2.6928 0.0021 9 6 6.1841 1.7136 0.5130 10 8 5.6705 0.7612 1.0675 11 7 7.5257 1.7901 0.4093 12 6 8.3751 0.6778 0.8578 13 6 9.3901 1.2153 1.8745 14 7 10.0296 2.4126 1.3113 15 6 11.3714 2.4895 1.2085 16 8 12.0594 1.5270 1.4929 17 6 12.0006 3.7307 0.7546 18 1 11.3887 4.5571 0.4249 19 6 13.3962 3.8484 0.7534 20 7 14.1364 2.8504 1.1578 21 14 14.1994 5.4320 0.1735 22 1 14.3712 6.3512 1.3271 23 1 15.5268 5.1263 -0.4178 24 1 13.3385 6.0778 -0.8499 25 6 9.1804 3.5271 0.8680 26 6 8.1654 2.9874 -0.1537 27 6 3.4331 1.2943 -0.0059 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2204 2.3246 -0.0005 32 1 3.6472 4.6637 -0.0006 33 1 5.8214 3.4918 -0.3649 34 1 8.9027 0.2530 0.0039 35 1 7.7576 -0.0879 1.3273 36 1 10.1462 0.4557 2.0730 37 1 8.8799 1.4750 2.8020 38 1 15.1030 2.9319 1.1566 39 1 8.6532 3.9483 1.7240 40 1 9.7982 4.2947 0.4018 41 1 8.6779 2.7270 -1.0797 42 1 7.4088 3.7458 -0.3552 43 1 4.0415 0.4018 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880546056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:50 Heat of formation + Delta-G solvation = -58.466955 kcal Electronic energy + Delta-G solvation = -28378.061739 eV Core-core repulsion = 24230.958255 eV Total energy + Delta-G solvation = -4147.103484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28990 -41.24905 -39.92952 -39.07245 -37.64945 -36.28425 -34.87070 -34.49808 -32.78987 -32.28126 -30.67311 -29.09442 -28.33049 -27.68083 -25.19952 -24.74592 -24.10890 -23.27627 -21.73515 -20.72215 -19.91088 -19.17909 -18.15677 -18.02775 -17.85761 -17.49965 -17.28570 -16.83752 -16.63180 -16.40412 -15.99388 -15.84501 -15.72599 -15.38468 -15.14276 -14.84254 -14.51433 -14.44469 -14.08292 -13.66131 -13.58726 -13.41410 -13.14456 -12.85567 -12.76613 -12.72287 -12.43578 -12.43163 -12.30055 -12.14086 -12.00223 -11.95508 -11.47128 -10.91850 -10.59061 -10.19717 -9.85597 -9.78191 -9.24385 -8.98113 -8.27659 -6.82304 -0.00259 0.23160 1.24982 1.44078 1.44672 1.59935 1.85598 2.17466 2.25559 2.47872 2.61941 2.77361 2.82705 3.58132 3.60224 3.66066 3.87726 3.88232 3.93219 4.04056 4.05310 4.19828 4.28310 4.37147 4.40816 4.44720 4.48590 4.65676 4.74563 4.76127 4.83057 4.86706 4.93736 5.05730 5.08082 5.29104 5.41965 5.59356 5.68037 5.75059 6.12962 6.24098 6.34183 6.64559 6.87550 6.89933 7.23739 7.40719 8.46868 8.68409 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.002307 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.643025 B =12135.627677 C =12970.161419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.096 3.904 4 C -0.008 4.008 5 N -0.440 5.440 6 C 0.038 3.962 7 C 0.159 3.841 8 N -0.661 5.661 9 C 0.706 3.294 10 O -0.607 6.607 11 N -0.614 5.614 12 C 0.130 3.870 13 C 0.109 3.891 14 N -0.645 5.645 15 C 0.541 3.459 16 O -0.632 6.632 17 C -0.564 4.564 18 H 0.103 0.897 19 C 0.027 3.973 20 N -0.824 5.824 21 Si 0.995 3.005 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.240 1.240 25 C 0.104 3.896 26 C 0.098 3.902 27 C -0.150 4.150 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.428 0.572 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.273 0.727 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.243 4.595 -6.388 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.047 3.953 4 C -0.167 4.167 5 N -0.149 5.149 6 C -0.123 4.123 7 C 0.060 3.940 8 N -0.312 5.312 9 C 0.409 3.591 10 O -0.486 6.486 11 N -0.349 5.349 12 C 0.006 3.994 13 C -0.016 4.016 14 N -0.382 5.382 15 C 0.348 3.652 16 O -0.519 6.519 17 C -0.600 4.600 18 H 0.121 0.879 19 C -0.188 4.188 20 N -0.454 5.454 21 Si 0.815 3.185 22 H -0.189 1.189 23 H -0.206 1.206 24 H -0.163 1.163 25 C -0.020 4.020 26 C -0.025 4.025 27 C -0.179 4.179 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.202 0.798 32 H 0.209 0.791 33 H 0.271 0.729 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.142 0.858 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.418 3.841 -5.822 26.358 hybrid contribution 1.439 -0.360 0.015 1.483 sum -23.979 3.480 -5.807 24.917 Atomic orbital electron populations 1.23474 0.75571 1.06075 1.02919 1.86089 1.24167 1.25978 1.88197 1.19958 0.92154 0.86491 0.96660 1.23186 1.01689 0.86362 1.05428 1.67568 1.11243 1.26532 1.09516 1.22814 0.88300 0.98185 1.03031 1.18445 0.83120 0.94059 0.98382 1.42516 1.03365 1.22409 1.62887 1.15885 0.81518 0.82727 0.79010 1.90896 1.72838 1.35383 1.49497 1.47269 1.03112 1.19669 1.64856 1.21748 0.91384 0.88488 0.97819 1.21529 0.94791 0.89784 0.95461 1.48035 1.05846 1.17366 1.66977 1.18739 0.79911 0.89091 0.77473 1.90557 1.62980 1.41066 1.57314 1.21497 0.92312 0.99669 1.46489 0.87947 1.27015 0.98160 1.01058 0.92559 1.70195 1.06144 1.33216 1.35820 0.85050 0.77580 0.76524 0.79384 1.18930 1.20553 1.16319 1.22137 0.92530 0.89907 0.97436 1.22414 0.96711 0.86515 0.96825 1.21053 0.92870 0.98768 1.05251 0.86218 0.91140 0.90740 0.79783 0.79146 0.72943 0.91471 0.88377 0.91385 0.92699 0.91743 0.91799 0.87401 0.90222 0.85793 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.24 16 2 O -0.33 -6.89 10.51 -92.49 -0.97 -7.86 16 3 C 0.10 2.14 6.71 22.58 0.15 2.29 16 4 C -0.01 -0.15 10.22 84.83 0.87 0.72 16 5 N -0.44 -8.79 10.35 -194.91 -2.02 -10.80 16 6 C 0.04 0.68 11.10 84.85 0.94 1.62 16 7 C 0.16 3.45 6.42 38.22 0.25 3.69 16 8 N -0.66 -13.02 5.28 -316.92 -1.67 -14.70 16 9 C 0.71 19.42 8.10 179.05 1.45 20.87 16 10 O -0.61 -21.17 13.05 -3.98 -0.05 -21.22 16 11 N -0.61 -16.63 2.95 -835.16 -2.46 -19.09 16 12 C 0.13 4.16 6.60 86.42 0.57 4.74 16 13 C 0.11 4.21 6.60 86.42 0.57 4.78 16 14 N -0.65 -27.25 2.94 -822.23 -2.42 -29.67 16 15 C 0.54 29.75 7.61 86.36 0.66 30.41 16 16 O -0.63 -41.21 14.45 -4.31 -0.06 -41.27 16 17 C -0.56 -29.38 8.86 24.83 0.22 -29.16 16 18 H 0.10 4.54 5.66 -2.92 -0.02 4.52 16 19 C 0.03 1.43 5.50 85.30 0.47 1.90 16 20 N -0.82 -49.01 11.84 21.84 0.26 -48.75 16 21 Si 1.00 38.35 29.56 68.60 2.03 40.37 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 25 C 0.10 3.11 6.51 86.56 0.56 3.67 16 26 C 0.10 2.18 6.58 86.56 0.57 2.75 16 27 C -0.15 -3.92 8.76 22.67 0.20 -3.72 16 28 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.52 7.68 -2.39 -0.02 0.50 16 30 H 0.07 0.48 7.68 -2.39 -0.02 0.46 16 31 H 0.19 2.17 6.31 -2.91 -0.02 2.15 16 32 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.43 5.14 6.27 -92.71 -0.58 4.56 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 3.12 6.99 -2.39 -0.02 3.10 16 36 H 0.07 3.03 6.99 -2.39 -0.02 3.01 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 3.24 5.34 -2.38 -0.01 3.22 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.12 1.50 5.61 -2.38 -0.01 1.49 16 43 H 0.14 4.30 6.01 -2.91 -0.02 4.28 16 Total: -1.00 -83.81 353.23 1.72 -82.09 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.50 Total: 25.09 kcal Atomic # 6 Polarization: 37.22 SS G_CDS: 8.59 Total: 45.81 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -8.31 Total: -123.02 kcal Atomic # 8 Polarization: -69.26 SS G_CDS: -1.09 Total: -70.35 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.37 kcal Total: -83.81 1.72 -82.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880546056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.624 kcal (2) G-P(sol) polarization free energy of solvation -83.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds