Wall clock time and date at job start Tue Mar 31 2020 17:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99606 * 2 1 4 4 C 1.53003 * 109.46643 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47068 * 65.00225 * 4 3 2 6 6 C 1.46218 * 124.85039 * 269.99603 * 5 4 3 7 7 N 1.46802 * 108.05482 * 180.02562 * 6 5 4 8 8 C 1.34778 * 127.03218 * 180.02562 * 7 6 5 9 9 O 1.21577 * 119.99846 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00299 * 180.02562 * 8 7 6 11 11 C 1.39247 * 120.00250 * 174.83734 * 10 8 7 12 12 C 1.39685 * 119.57477 * 185.31476 * 11 10 8 13 13 C 1.38638 * 119.49460 * 179.97438 * 12 11 10 14 14 C 1.38349 * 118.67431 * 0.02562 * 13 12 11 15 15 C 1.40578 * 119.12941 * 359.97438 * 14 13 12 16 16 C 1.41331 * 119.78904 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.40025 * 119.99852 * 180.02562 * 16 15 14 19 19 N 1.30740 * 120.00597 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47429 * 89.99695 * 20 18 16 22 22 H 1.48503 * 109.46964 * 209.99544 * 20 18 16 23 23 H 1.48503 * 109.46942 * 329.99346 * 20 18 16 24 24 N 1.31898 * 119.57439 * 5.04729 * 11 10 8 25 25 C 1.46985 * 105.93928 * 359.97438 * 7 6 5 26 26 C 1.34295 * 124.85571 * 90.02198 * 5 4 3 27 27 O 1.21284 * 125.42858 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46864 * 299.99625 * 1 2 3 30 30 H 1.08992 * 109.47183 * 59.99974 * 1 2 3 31 31 H 1.08994 * 109.47144 * 60.00540 * 3 2 1 32 32 H 1.08995 * 109.47035 * 299.99446 * 3 2 1 33 33 H 1.08992 * 109.47298 * 304.99606 * 4 3 2 34 34 H 1.09001 * 109.46883 * 184.99365 * 4 3 2 35 35 H 1.09001 * 109.75727 * 299.67707 * 6 5 4 36 36 H 1.08994 * 109.75782 * 60.37095 * 6 5 4 37 37 H 0.97000 * 119.99659 * 354.83343 * 10 8 7 38 38 H 1.08001 * 120.25024 * 359.95998 * 12 11 10 39 39 H 1.08007 * 120.66385 * 180.02562 * 13 12 11 40 40 H 1.07995 * 120.43822 * 179.97438 * 14 13 12 41 41 H 0.96988 * 120.00579 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.04000 * 240.72624 * 25 7 6 43 43 H 1.09001 * 110.03915 * 119.27435 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1411 -0.8735 -1.4600 7 7 4.5942 -1.0851 -2.8402 8 6 4.8641 -2.2645 -3.4341 9 8 4.7373 -3.3014 -2.8121 10 7 5.2745 -2.2944 -4.7175 11 6 5.6563 -3.5010 -5.2985 12 6 6.1852 -3.5068 -6.5913 13 6 6.5652 -4.7089 -7.1679 14 6 6.4068 -5.8741 -6.4391 15 6 5.8685 -5.8024 -5.1425 16 6 5.7012 -6.9841 -4.3854 17 1 5.9862 -7.9382 -4.8035 18 6 5.1649 -6.9178 -3.0936 19 7 4.8194 -5.7629 -2.5875 20 14 4.9444 -8.4796 -2.0926 21 1 6.1738 -8.7378 -1.3008 22 1 3.7885 -8.3197 -1.1741 23 1 4.6955 -9.6227 -3.0073 24 7 5.5187 -4.6230 -4.6189 25 6 4.6922 0.2521 -3.4424 26 6 4.2853 1.2353 -2.3742 27 8 4.2439 2.4402 -2.5068 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0888 35 1 4.8846 -1.2628 -0.7645 36 1 3.1890 -1.3803 -1.3031 37 1 5.3039 -1.4755 -5.2365 38 1 6.2969 -2.5818 -7.1376 39 1 6.9767 -4.7352 -8.1662 40 1 6.6930 -6.8263 -6.8607 41 1 4.4483 -5.7169 -1.6927 42 1 4.0189 0.3275 -4.2962 43 1 5.7178 0.4460 -3.7567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:16 Heat of formation + Delta-G solvation = -12.147764 kcal Electronic energy + Delta-G solvation = -28976.404415 eV Core-core repulsion = 24831.309482 eV Total energy + Delta-G solvation = -4145.094933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94481 -39.26295 -38.09991 -37.72636 -36.40412 -34.19778 -34.14542 -33.00593 -30.49255 -30.23397 -28.88898 -28.40441 -26.71787 -25.68684 -24.86612 -23.24526 -21.96111 -21.23950 -19.99705 -19.58075 -18.24870 -17.32865 -16.92344 -16.78326 -16.36227 -16.15614 -15.60476 -15.57537 -15.19552 -14.79006 -14.49999 -14.42276 -14.33090 -13.71815 -13.54336 -13.41128 -13.05373 -12.89963 -12.77806 -12.49634 -12.36890 -12.19502 -11.98927 -11.92538 -11.47128 -11.15731 -10.94731 -10.64926 -10.47122 -10.27475 -9.95997 -9.92268 -9.78159 -9.30122 -9.24427 -9.02942 -8.30501 -7.96823 -7.26568 -6.98784 -6.12531 -4.39389 2.27766 2.37447 2.81943 2.98278 3.10738 3.18429 3.20629 3.27644 3.49031 4.02316 4.07504 4.12258 4.30607 4.66888 4.72900 4.90823 4.93653 5.04344 5.10005 5.12450 5.22738 5.25504 5.38047 5.45616 5.49624 5.62477 5.80603 6.03602 6.09631 6.14396 6.47234 6.60533 6.76684 6.81518 6.84455 6.93349 7.18817 7.30628 7.59510 7.67317 7.80892 7.85590 8.13008 8.23591 8.52304 8.76718 9.05031 9.39771 10.23880 10.49211 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003584 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.560561 B = 7811.648509 C = 9656.743015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.137 3.863 5 N -0.618 5.618 6 C 0.361 3.639 7 N -0.653 5.653 8 C 0.698 3.302 9 O -0.445 6.445 10 N -0.666 5.666 11 C 0.386 3.614 12 C -0.355 4.355 13 C -0.035 4.035 14 C -0.305 4.305 15 C 0.272 3.728 16 C -0.424 4.424 17 H 0.082 0.918 18 C 0.057 3.943 19 N -0.652 5.652 20 Si 0.895 3.105 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.264 1.264 24 N -0.473 5.473 25 C 0.068 3.932 26 C 0.522 3.478 27 O -0.527 6.527 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.273 0.727 42 H 0.100 0.900 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 13.699 6.195 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.037 4.037 4 C 0.015 3.985 5 N -0.353 5.353 6 C 0.152 3.848 7 N -0.401 5.401 8 C 0.398 3.602 9 O -0.307 6.307 10 N -0.315 5.315 11 C 0.147 3.853 12 C -0.382 4.382 13 C -0.059 4.059 14 C -0.328 4.328 15 C 0.147 3.853 16 C -0.454 4.454 17 H 0.101 0.899 18 C -0.172 4.172 19 N -0.270 5.270 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 N -0.192 5.192 25 C -0.060 4.060 26 C 0.309 3.691 27 O -0.403 6.403 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.870 13.351 7.755 16.518 hybrid contribution -0.012 0.180 -0.756 0.777 sum -5.882 13.531 6.999 16.330 Atomic orbital electron populations 1.22739 0.80810 1.03052 0.99725 1.87932 1.19912 1.27161 1.95386 1.23045 0.94061 0.85600 1.00980 1.21435 0.92324 0.99718 0.85005 1.48334 1.66331 1.07969 1.12654 1.20992 1.00906 0.79244 0.83610 1.47653 1.74956 1.04405 1.13040 1.15643 0.80454 0.81493 0.82603 1.91437 1.51109 1.26439 1.61670 1.42470 1.68744 1.09388 1.10854 1.18284 0.92441 0.86220 0.88397 1.20412 1.22484 0.97652 0.97612 1.20548 0.95884 0.92475 0.97027 1.21629 1.15698 0.96851 0.98618 1.18361 0.87771 0.90585 0.88590 1.19587 1.34694 0.93145 0.98012 0.89938 1.26176 0.95665 0.96829 0.98524 1.70308 1.20284 1.23044 1.13371 0.86531 0.78481 0.82922 0.80107 1.19682 1.20324 1.18786 1.68635 1.22539 0.95349 1.32673 1.21795 1.03915 0.83513 0.96744 1.20587 0.76243 0.88336 0.83955 1.90754 1.54410 1.13010 1.82103 0.89369 0.94172 0.94177 0.91957 0.92779 0.88730 0.87919 0.90614 0.89556 0.77002 0.89058 0.88531 0.88517 0.91562 0.88194 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.17 10.03 -35.23 -0.35 -4.52 16 3 C 0.04 0.36 6.28 37.16 0.23 0.59 16 4 C 0.14 1.20 6.37 -4.04 -0.03 1.18 16 5 N -0.62 -7.22 2.87 -177.58 -0.51 -7.73 16 6 C 0.36 4.94 7.49 -63.73 -0.48 4.46 16 7 N -0.65 -10.03 3.36 -184.00 -0.62 -10.65 16 8 C 0.70 14.12 8.49 -86.92 -0.74 13.38 16 9 O -0.44 -11.09 12.50 5.30 0.07 -11.03 16 10 N -0.67 -13.05 5.35 -15.79 -0.08 -13.14 16 11 C 0.39 9.29 7.43 -155.00 -1.15 8.14 16 12 C -0.36 -7.86 9.95 -38.89 -0.39 -8.24 16 13 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 14 C -0.30 -7.59 9.83 -38.66 -0.38 -7.97 16 15 C 0.27 7.56 6.55 -85.00 -0.56 7.01 16 16 C -0.42 -11.55 9.14 -37.74 -0.34 -11.90 16 17 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 18 C 0.06 1.50 5.50 -17.35 -0.10 1.40 16 19 N -0.65 -17.87 8.98 55.55 0.50 -17.37 16 20 Si 0.90 19.08 29.56 -169.99 -5.02 14.06 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 N -0.47 -13.16 5.73 -10.26 -0.06 -13.22 16 25 C 0.07 0.82 6.37 -4.89 -0.03 0.79 16 26 C 0.52 6.75 8.13 -11.17 -0.09 6.66 16 27 O -0.53 -8.00 17.67 5.55 0.10 -7.90 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.80 7.98 -51.93 -0.41 0.39 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.28 7.59 -51.93 -0.39 0.89 16 37 H 0.40 6.07 7.79 -40.82 -0.32 5.75 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.27 7.01 8.29 -40.82 -0.34 6.68 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -34.37 367.02 -9.53 -43.91 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.75 Total: 6.35 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: -3.33 Total: 15.70 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.77 Total: -62.10 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.19 Total: -23.45 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.37 -9.53 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.762 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds