Wall clock time and date at job start Tue Mar 31 2020 17:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99606 * 2 1 4 4 C 1.53003 * 109.46643 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47068 * 65.00225 * 4 3 2 6 6 C 1.46218 * 124.85039 * 269.99603 * 5 4 3 7 7 N 1.46802 * 108.05482 * 180.02562 * 6 5 4 8 8 C 1.34778 * 127.03218 * 180.02562 * 7 6 5 9 9 O 1.21577 * 119.99846 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00299 * 180.02562 * 8 7 6 11 11 C 1.39247 * 120.00250 * 174.83734 * 10 8 7 12 12 C 1.39685 * 119.57477 * 185.31476 * 11 10 8 13 13 C 1.38638 * 119.49460 * 179.97438 * 12 11 10 14 14 C 1.38349 * 118.67431 * 0.02562 * 13 12 11 15 15 C 1.40578 * 119.12941 * 359.97438 * 14 13 12 16 16 C 1.41331 * 119.78904 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.40025 * 119.99852 * 180.02562 * 16 15 14 19 19 N 1.30740 * 120.00597 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47429 * 89.99695 * 20 18 16 22 22 H 1.48503 * 109.46964 * 209.99544 * 20 18 16 23 23 H 1.48503 * 109.46942 * 329.99346 * 20 18 16 24 24 N 1.31898 * 119.57439 * 5.04729 * 11 10 8 25 25 C 1.46985 * 105.93928 * 359.97438 * 7 6 5 26 26 C 1.34295 * 124.85571 * 90.02198 * 5 4 3 27 27 O 1.21284 * 125.42858 * 359.97438 * 26 5 4 28 28 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46864 * 299.99625 * 1 2 3 30 30 H 1.08992 * 109.47183 * 59.99974 * 1 2 3 31 31 H 1.08994 * 109.47144 * 60.00540 * 3 2 1 32 32 H 1.08995 * 109.47035 * 299.99446 * 3 2 1 33 33 H 1.08992 * 109.47298 * 304.99606 * 4 3 2 34 34 H 1.09001 * 109.46883 * 184.99365 * 4 3 2 35 35 H 1.09001 * 109.75727 * 299.67707 * 6 5 4 36 36 H 1.08994 * 109.75782 * 60.37095 * 6 5 4 37 37 H 0.97000 * 119.99659 * 354.83343 * 10 8 7 38 38 H 1.08001 * 120.25024 * 359.95998 * 12 11 10 39 39 H 1.08007 * 120.66385 * 180.02562 * 13 12 11 40 40 H 1.07995 * 120.43822 * 179.97438 * 14 13 12 41 41 H 0.96988 * 120.00579 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.04000 * 240.72624 * 25 7 6 43 43 H 1.09001 * 110.03915 * 119.27435 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1411 -0.8735 -1.4600 7 7 4.5942 -1.0851 -2.8402 8 6 4.8641 -2.2645 -3.4341 9 8 4.7373 -3.3014 -2.8121 10 7 5.2745 -2.2944 -4.7175 11 6 5.6563 -3.5010 -5.2985 12 6 6.1852 -3.5068 -6.5913 13 6 6.5652 -4.7089 -7.1679 14 6 6.4068 -5.8741 -6.4391 15 6 5.8685 -5.8024 -5.1425 16 6 5.7012 -6.9841 -4.3854 17 1 5.9862 -7.9382 -4.8035 18 6 5.1649 -6.9178 -3.0936 19 7 4.8194 -5.7629 -2.5875 20 14 4.9444 -8.4796 -2.0926 21 1 6.1738 -8.7378 -1.3008 22 1 3.7885 -8.3197 -1.1741 23 1 4.6955 -9.6227 -3.0073 24 7 5.5187 -4.6230 -4.6189 25 6 4.6922 0.2521 -3.4424 26 6 4.2853 1.2353 -2.3742 27 8 4.2439 2.4402 -2.5068 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0888 35 1 4.8846 -1.2628 -0.7645 36 1 3.1890 -1.3803 -1.3031 37 1 5.3039 -1.4755 -5.2365 38 1 6.2969 -2.5818 -7.1376 39 1 6.9767 -4.7352 -8.1662 40 1 6.6930 -6.8263 -6.8607 41 1 4.4483 -5.7169 -1.6927 42 1 4.0189 0.3275 -4.2962 43 1 5.7178 0.4460 -3.7567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:15 Heat of formation + Delta-G solvation = -34.832089 kcal Electronic energy + Delta-G solvation = -28977.388081 eV Core-core repulsion = 24831.309482 eV Total energy + Delta-G solvation = -4146.078599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09884 -40.80729 -39.41688 -38.84853 -37.64345 -35.93134 -35.31107 -34.77427 -32.20136 -31.51655 -30.51839 -29.48338 -27.66901 -27.29259 -26.11956 -24.07686 -23.66685 -23.03055 -21.11767 -21.02808 -19.86304 -18.84435 -17.99867 -17.95075 -17.54334 -17.38925 -16.59614 -16.56131 -16.45047 -16.24038 -16.18051 -15.73480 -15.59059 -15.48240 -14.90689 -14.62325 -14.62009 -14.22852 -13.86859 -13.66393 -13.61655 -13.42795 -13.15059 -12.91548 -12.86287 -12.69590 -12.52046 -12.28836 -12.16384 -11.74753 -11.54201 -11.38162 -10.94182 -10.86746 -10.67897 -10.32382 -9.86961 -9.53264 -9.13219 -8.79679 -8.00407 -6.37666 0.97765 1.15272 1.25878 1.30403 1.43044 1.54425 1.56991 1.87867 2.29932 2.42061 2.80991 2.88031 3.04844 3.11618 3.86509 3.96981 4.09183 4.16353 4.26310 4.29179 4.33761 4.37948 4.43374 4.48152 4.51983 4.54397 4.62739 4.74737 4.82189 4.84247 4.95144 5.00175 5.06877 5.16666 5.31028 5.68215 5.82852 5.84327 5.94124 5.99641 6.17471 6.26197 6.40975 6.83034 6.84247 6.98552 7.11432 7.83052 8.37676 8.60963 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003584 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.560561 B = 7811.648509 C = 9656.743015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.042 3.958 4 C 0.130 3.870 5 N -0.610 5.610 6 C 0.368 3.632 7 N -0.648 5.648 8 C 0.697 3.303 9 O -0.496 6.496 10 N -0.654 5.654 11 C 0.366 3.634 12 C -0.342 4.342 13 C -0.033 4.033 14 C -0.329 4.329 15 C 0.239 3.761 16 C -0.465 4.465 17 H 0.085 0.915 18 C 0.013 3.987 19 N -0.686 5.686 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.257 1.257 24 N -0.508 5.508 25 C 0.067 3.933 26 C 0.524 3.476 27 O -0.548 6.548 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.417 0.583 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.270 0.730 42 H 0.119 0.881 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 15.193 5.867 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C -0.035 4.035 4 C 0.010 3.990 5 N -0.345 5.345 6 C 0.158 3.842 7 N -0.393 5.393 8 C 0.397 3.603 9 O -0.362 6.362 10 N -0.304 5.304 11 C 0.126 3.874 12 C -0.368 4.368 13 C -0.057 4.057 14 C -0.352 4.352 15 C 0.114 3.886 16 C -0.496 4.496 17 H 0.103 0.897 18 C -0.213 4.213 19 N -0.305 5.305 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.181 1.181 24 N -0.227 5.227 25 C -0.059 4.059 26 C 0.312 3.688 27 O -0.426 6.426 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.760 14.935 7.415 17.641 hybrid contribution -0.041 -0.088 -0.755 0.761 sum -5.801 14.846 6.660 17.275 Atomic orbital electron populations 1.22839 0.79821 1.03291 1.00714 1.87896 1.21186 1.28468 1.95576 1.23097 0.93706 0.84975 1.01718 1.21758 0.92669 1.00491 0.84115 1.48402 1.65792 1.06807 1.13449 1.20866 1.00154 0.80377 0.82766 1.47297 1.73769 1.04504 1.13770 1.15709 0.80039 0.82002 0.82547 1.91427 1.53145 1.28854 1.62791 1.42270 1.68173 1.09014 1.10971 1.18750 0.92539 0.86668 0.89405 1.20890 1.19824 0.99319 0.96763 1.21026 0.94651 0.91575 0.98467 1.21812 1.16605 0.98481 0.98271 1.18833 0.88597 0.91167 0.90048 1.19897 1.36873 0.93472 0.99365 0.89671 1.26989 0.94900 1.00218 0.99189 1.70504 1.21393 1.25160 1.13462 0.85373 0.78430 0.78624 0.78264 1.19172 1.19857 1.18060 1.68596 1.23574 0.96329 1.34218 1.22020 1.05705 0.81203 0.96985 1.20575 0.75988 0.88020 0.84247 1.90753 1.55647 1.13751 1.82446 0.89615 0.92197 0.94127 0.89172 0.93972 0.87232 0.86505 0.90624 0.90866 0.74513 0.84935 0.84429 0.87749 0.91894 0.86298 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -8.61 10.03 -148.98 -1.49 -10.11 16 3 C 0.04 0.67 6.28 71.98 0.45 1.13 16 4 C 0.13 2.07 6.37 86.38 0.55 2.62 16 5 N -0.61 -13.51 2.87 -834.40 -2.40 -15.91 16 6 C 0.37 9.96 7.49 170.95 1.28 11.24 16 7 N -0.65 -19.45 3.36 -854.33 -2.87 -22.32 16 8 C 0.70 28.29 8.49 179.05 1.52 29.81 16 9 O -0.50 -25.63 12.50 -3.96 -0.05 -25.68 16 10 N -0.65 -24.95 5.35 -322.13 -1.72 -26.67 16 11 C 0.37 17.42 7.43 133.26 0.99 18.41 16 12 C -0.34 -14.25 9.95 22.72 0.23 -14.03 16 13 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 14 C -0.33 -16.40 9.83 22.87 0.22 -16.18 16 15 C 0.24 13.69 6.55 40.19 0.26 13.95 16 16 C -0.47 -26.35 9.14 23.46 0.21 -26.13 16 17 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 18 C 0.01 0.69 5.50 85.29 0.47 1.16 16 19 N -0.69 -39.27 8.98 21.84 0.20 -39.07 16 20 Si 0.97 40.48 29.56 68.60 2.03 42.51 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 N -0.51 -28.92 5.73 -186.37 -1.07 -29.99 16 25 C 0.07 1.48 6.37 85.56 0.54 2.02 16 26 C 0.52 12.67 8.13 87.76 0.71 13.38 16 27 O -0.55 -15.68 17.67 -3.04 -0.05 -15.73 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 1.57 7.98 -2.39 -0.02 1.55 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.22 7.59 -2.39 -0.02 2.21 16 37 H 0.42 11.74 7.79 -92.71 -0.72 11.02 16 38 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.27 14.59 8.29 -92.72 -0.77 13.82 16 42 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -77.63 367.02 1.81 -75.81 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.32 Total: 29.22 kcal Atomic # 6 Polarization: 29.00 SS G_CDS: 8.92 Total: 37.93 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -7.87 Total: -133.95 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -1.60 Total: -51.52 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -77.63 1.81 -75.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.981 kcal (2) G-P(sol) polarization free energy of solvation -77.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds