Wall clock time and date at job start Tue Mar 31 2020 18:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48501 * 109.47064 * 269.99989 * 3 2 1 5 5 H 1.48500 * 109.46874 * 29.99517 * 3 2 1 6 6 H 1.48499 * 109.47292 * 149.99667 * 3 2 1 7 7 C 1.38814 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 195.52982 * 7 2 1 9 9 N 1.36931 * 120.00065 * 15.53337 * 7 2 1 10 10 C 1.46967 * 120.58947 * 214.79028 * 9 7 2 11 11 C 1.53374 * 108.63028 * 235.20154 * 10 9 7 12 12 N 1.46961 * 108.63698 * 310.57682 * 11 10 9 13 13 C 1.34781 * 120.59326 * 235.20624 * 12 11 10 14 14 O 1.21276 * 120.00151 * 5.18124 * 13 12 11 15 15 C 1.50700 * 120.00039 * 185.18387 * 13 12 11 16 16 H 1.09004 * 109.39499 * 323.67335 * 15 13 12 17 17 C 1.53077 * 109.41897 * 83.56854 * 15 13 12 18 18 C 1.53411 * 108.30930 * 168.27869 * 17 15 13 19 19 O 1.42828 * 108.36677 * 295.34309 * 18 17 15 20 20 C 1.35896 * 117.84521 * 49.25618 * 19 18 17 21 21 C 1.39342 * 118.49146 * 162.76130 * 20 19 18 22 22 F 1.35099 * 119.91858 * 359.59316 * 21 20 19 23 23 C 1.38139 * 120.17308 * 179.57158 * 21 20 19 24 24 C 1.38302 * 119.92487 * 359.97438 * 23 21 20 25 25 C 1.38080 * 120.00530 * 0.10106 * 24 23 21 26 26 C 1.38277 * 121.81352 * 342.50120 * 20 19 18 27 27 C 1.46957 * 118.81270 * 55.47959 * 12 11 10 28 28 C 1.46961 * 120.59635 * 34.76552 * 9 7 2 29 29 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.60820 * 115.46478 * 10 9 7 31 31 H 1.08998 * 109.61234 * 354.94549 * 10 9 7 32 32 H 1.09006 * 109.61042 * 190.83071 * 11 10 9 33 33 H 1.08995 * 109.74998 * 70.41010 * 11 10 9 34 34 H 1.09002 * 109.70275 * 48.56619 * 17 15 13 35 35 H 1.09006 * 109.72429 * 287.99379 * 17 15 13 36 36 H 1.09004 * 109.68052 * 175.62790 * 18 17 15 37 37 H 1.08992 * 109.71844 * 55.08259 * 18 17 15 38 38 H 1.07996 * 120.03626 * 179.97438 * 23 21 20 39 39 H 1.08009 * 119.99941 * 180.02562 * 24 23 21 40 40 H 1.07995 * 119.81901 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.61313 * 64.26822 * 27 12 11 42 42 H 1.08998 * 109.61407 * 184.77783 * 27 12 11 43 43 H 1.08997 * 109.61369 * 244.53822 * 28 9 7 44 44 H 1.08999 * 109.61156 * 5.05230 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0607 -1.2191 0.2510 9 7 1.3630 -2.3665 -0.3165 10 6 1.7255 -3.6277 0.3452 11 6 2.0763 -4.6626 -0.7311 12 7 1.0066 -4.6733 -1.7387 13 6 0.3696 -5.8194 -2.0507 14 8 0.6112 -6.8349 -1.4333 15 6 -0.6428 -5.8390 -3.1668 16 1 -1.1960 -4.8998 -3.1702 17 6 0.0791 -6.0103 -4.5058 18 6 -0.9690 -6.3215 -5.5819 19 8 -1.5681 -7.5814 -5.2757 20 6 -2.0143 -7.7805 -4.0076 21 6 -2.9095 -8.8225 -3.7739 22 9 -3.3195 -9.6012 -4.7989 23 6 -3.3784 -9.0616 -2.4967 24 6 -2.9581 -8.2653 -1.4470 25 6 -2.0723 -7.2312 -1.6765 26 6 -1.6001 -6.9844 -2.9556 27 6 0.6480 -3.4132 -2.4044 28 6 0.2933 -2.3773 -1.3241 29 1 -0.4850 0.8401 -0.0004 30 1 0.8827 -3.9861 0.9363 31 1 2.5875 -3.4667 0.9926 32 1 2.1602 -5.6496 -0.2761 33 1 3.0216 -4.3963 -1.2039 34 1 0.7907 -6.8331 -4.4370 35 1 0.6050 -5.0901 -4.7605 36 1 -0.4883 -6.3714 -6.5590 37 1 -1.7324 -5.5437 -5.5877 38 1 -4.0725 -9.8695 -2.3182 39 1 -3.3237 -8.4515 -0.4479 40 1 -1.7457 -6.6115 -0.8545 41 1 1.4933 -3.0569 -2.9931 42 1 -0.2117 -3.5747 -3.0547 43 1 -0.6514 -2.6466 -0.8519 44 1 0.2094 -1.3903 -1.7791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949221124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:49 Heat of formation + Delta-G solvation = -58.099577 kcal Electronic energy + Delta-G solvation = -29561.299047 eV Core-core repulsion = 25394.291532 eV Total energy + Delta-G solvation = -4167.007515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.82033 -41.18404 -39.39244 -37.66578 -36.86114 -34.41843 -33.83074 -31.38642 -30.94939 -30.31311 -29.92368 -27.48467 -26.19062 -24.16998 -23.72939 -23.07636 -22.52574 -21.12202 -20.13613 -18.82376 -18.00369 -17.52746 -17.47550 -16.70746 -16.16444 -15.93587 -15.56912 -15.29436 -15.06526 -14.85872 -14.69807 -14.62854 -13.96322 -13.78627 -13.57820 -13.44015 -13.32188 -13.22400 -13.05995 -12.63364 -12.30230 -12.11509 -11.80888 -11.66257 -11.45032 -11.28240 -11.07200 -10.93088 -10.89474 -10.80019 -10.56474 -10.34868 -10.17106 -9.91241 -9.44219 -8.78715 -8.66713 -8.37249 -8.27711 -6.72507 -5.94825 -3.45882 1.02267 1.16139 2.76538 2.97852 3.20091 3.27699 3.35819 3.36736 3.54578 4.07489 4.26161 4.36432 4.43546 4.53994 4.67161 4.82055 4.92714 5.05920 5.10259 5.17737 5.18412 5.24286 5.28305 5.33963 5.57018 5.65244 5.74409 5.75129 5.81779 5.86841 5.98899 6.00345 6.10365 6.17583 6.23039 6.32837 6.36825 6.55493 6.71181 6.82147 7.06867 7.17130 7.27006 7.66736 7.76529 8.31436 8.40342 9.03739 9.64248 10.25302 11.12683 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.002942 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.145036 B = 9515.319162 C = 9778.518320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.011 3.989 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.593 5.593 13 C 0.519 3.481 14 O -0.545 6.545 15 C -0.069 4.069 16 H 0.113 0.887 17 C -0.149 4.149 18 C 0.064 3.936 19 O -0.310 6.310 20 C 0.106 3.894 21 C 0.062 3.938 22 F -0.136 7.136 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.061 4.061 26 C -0.114 4.114 27 C 0.076 3.924 28 C 0.162 3.838 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 -12.515 -9.134 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.189 4.189 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.324 5.324 13 C 0.305 3.695 14 O -0.423 6.423 15 C -0.090 4.090 16 H 0.130 0.870 17 C -0.187 4.187 18 C -0.011 4.011 19 O -0.224 6.224 20 C 0.060 3.940 21 C 0.043 3.957 22 F -0.114 7.114 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.080 4.080 26 C -0.115 4.115 27 C -0.049 4.049 28 C 0.035 3.965 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.488 -13.022 -8.973 16.439 hybrid contribution 0.422 1.141 -0.049 1.218 sum -4.066 -11.881 -9.022 15.462 Atomic orbital electron populations 1.70012 1.05398 1.25893 1.52750 1.25242 0.95290 0.98725 0.99612 0.86281 0.79244 0.83352 0.77794 1.21246 1.21639 1.20261 1.19135 0.92001 0.84261 1.43905 0.91753 1.43893 1.41744 1.03570 1.41950 1.21312 0.98628 0.86944 0.92587 1.22243 0.88898 1.01075 0.90627 1.48039 1.36555 1.07746 1.40103 1.20047 0.81991 0.83393 0.84035 1.90677 1.65579 1.33067 1.52976 1.20244 0.95083 0.98334 0.95296 0.86969 1.22196 0.98764 1.04702 0.92998 1.23038 0.95098 0.83998 0.98921 1.86036 1.74421 1.36672 1.25247 1.18539 0.95153 0.95693 0.84621 1.17053 0.99560 0.93692 0.85431 1.91475 1.89025 1.73048 1.57901 1.20961 1.01366 1.01289 0.90400 1.20873 0.98789 0.95711 0.98962 1.21020 0.94297 0.96974 0.95666 1.19175 1.00371 0.98848 0.93135 1.22876 0.99837 0.84938 0.97200 1.21151 0.90500 0.96729 0.88097 0.93407 0.95832 0.91462 0.89956 0.91900 0.89668 0.88621 0.86751 0.91116 0.84239 0.84741 0.85107 0.91534 0.91026 0.95570 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 11.59 55.49 0.64 -23.84 16 2 C 0.01 0.30 4.90 -17.43 -0.09 0.21 16 3 Si 0.90 20.43 29.58 -169.99 -5.03 15.40 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.26 -6.75 9.51 -15.06 -0.14 -6.90 16 8 H 0.06 1.64 7.88 -52.48 -0.41 1.22 16 9 N -0.59 -13.67 2.93 -171.77 -0.50 -14.17 16 10 C 0.13 2.65 6.67 -3.59 -0.02 2.63 16 11 C 0.10 1.65 6.60 -3.60 -0.02 1.63 16 12 N -0.59 -9.81 2.94 -172.22 -0.51 -10.32 16 13 C 0.52 8.35 6.01 -10.98 -0.07 8.28 16 14 O -0.54 -10.29 14.43 5.56 0.08 -10.21 16 15 C -0.07 -0.89 1.92 -92.85 -0.18 -1.07 16 16 H 0.11 1.33 6.12 -51.93 -0.32 1.01 16 17 C -0.15 -1.58 5.49 -26.48 -0.15 -1.73 16 18 C 0.06 0.61 7.03 37.37 0.26 0.87 16 19 O -0.31 -4.06 10.09 -19.41 -0.20 -4.25 16 20 C 0.11 1.47 6.48 -39.16 -0.25 1.22 16 21 C 0.06 0.84 7.30 -39.21 -0.29 0.55 16 22 F -0.14 -1.89 17.05 2.25 0.04 -1.85 16 23 C -0.12 -1.38 10.02 -39.59 -0.40 -1.78 16 24 C -0.13 -1.45 10.04 -39.62 -0.40 -1.85 16 25 C -0.06 -0.84 8.32 -39.52 -0.33 -1.17 16 26 C -0.11 -1.58 5.12 -104.45 -0.54 -2.12 16 27 C 0.08 1.21 6.47 -3.37 -0.02 1.19 16 28 C 0.16 3.42 5.48 -3.37 -0.02 3.40 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 32 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.13 1.90 7.11 -52.49 -0.37 1.52 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.93 5.39 -51.93 -0.28 0.65 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 2.09 6.45 -51.93 -0.34 1.75 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -30.81 354.65 -8.62 -39.43 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.85 Total: 1.10 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.64 Total: 3.37 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.37 Total: -48.33 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.12 Total: -14.47 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.81 -8.62 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949221124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.665 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds