Wall clock time and date at job start Tue Mar 31 2020 18:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48501 * 109.47064 * 269.99989 * 3 2 1 5 5 H 1.48500 * 109.46874 * 29.99517 * 3 2 1 6 6 H 1.48499 * 109.47292 * 149.99667 * 3 2 1 7 7 C 1.38814 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 195.52982 * 7 2 1 9 9 N 1.36931 * 120.00065 * 15.53337 * 7 2 1 10 10 C 1.46967 * 120.58947 * 214.79028 * 9 7 2 11 11 C 1.53374 * 108.63028 * 235.20154 * 10 9 7 12 12 N 1.46961 * 108.63698 * 310.57682 * 11 10 9 13 13 C 1.34781 * 120.59326 * 235.20624 * 12 11 10 14 14 O 1.21276 * 120.00151 * 5.18124 * 13 12 11 15 15 C 1.50700 * 120.00039 * 185.18387 * 13 12 11 16 16 H 1.09004 * 109.39499 * 323.67335 * 15 13 12 17 17 C 1.53077 * 109.41897 * 83.56854 * 15 13 12 18 18 C 1.53411 * 108.30930 * 168.27869 * 17 15 13 19 19 O 1.42828 * 108.36677 * 295.34309 * 18 17 15 20 20 C 1.35896 * 117.84521 * 49.25618 * 19 18 17 21 21 C 1.39342 * 118.49146 * 162.76130 * 20 19 18 22 22 F 1.35099 * 119.91858 * 359.59316 * 21 20 19 23 23 C 1.38139 * 120.17308 * 179.57158 * 21 20 19 24 24 C 1.38302 * 119.92487 * 359.97438 * 23 21 20 25 25 C 1.38080 * 120.00530 * 0.10106 * 24 23 21 26 26 C 1.38277 * 121.81352 * 342.50120 * 20 19 18 27 27 C 1.46957 * 118.81270 * 55.47959 * 12 11 10 28 28 C 1.46961 * 120.59635 * 34.76552 * 9 7 2 29 29 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.60820 * 115.46478 * 10 9 7 31 31 H 1.08998 * 109.61234 * 354.94549 * 10 9 7 32 32 H 1.09006 * 109.61042 * 190.83071 * 11 10 9 33 33 H 1.08995 * 109.74998 * 70.41010 * 11 10 9 34 34 H 1.09002 * 109.70275 * 48.56619 * 17 15 13 35 35 H 1.09006 * 109.72429 * 287.99379 * 17 15 13 36 36 H 1.09004 * 109.68052 * 175.62790 * 18 17 15 37 37 H 1.08992 * 109.71844 * 55.08259 * 18 17 15 38 38 H 1.07996 * 120.03626 * 179.97438 * 23 21 20 39 39 H 1.08009 * 119.99941 * 180.02562 * 24 23 21 40 40 H 1.07995 * 119.81901 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.61313 * 64.26822 * 27 12 11 42 42 H 1.08998 * 109.61407 * 184.77783 * 27 12 11 43 43 H 1.08997 * 109.61369 * 244.53822 * 28 9 7 44 44 H 1.08999 * 109.61156 * 5.05230 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0607 -1.2191 0.2510 9 7 1.3630 -2.3665 -0.3165 10 6 1.7255 -3.6277 0.3452 11 6 2.0763 -4.6626 -0.7311 12 7 1.0066 -4.6733 -1.7387 13 6 0.3696 -5.8194 -2.0507 14 8 0.6112 -6.8349 -1.4333 15 6 -0.6428 -5.8390 -3.1668 16 1 -1.1960 -4.8998 -3.1702 17 6 0.0791 -6.0103 -4.5058 18 6 -0.9690 -6.3215 -5.5819 19 8 -1.5681 -7.5814 -5.2757 20 6 -2.0143 -7.7805 -4.0076 21 6 -2.9095 -8.8225 -3.7739 22 9 -3.3195 -9.6012 -4.7989 23 6 -3.3784 -9.0616 -2.4967 24 6 -2.9581 -8.2653 -1.4470 25 6 -2.0723 -7.2312 -1.6765 26 6 -1.6001 -6.9844 -2.9556 27 6 0.6480 -3.4132 -2.4044 28 6 0.2933 -2.3773 -1.3241 29 1 -0.4850 0.8401 -0.0004 30 1 0.8827 -3.9861 0.9363 31 1 2.5875 -3.4667 0.9926 32 1 2.1602 -5.6496 -0.2761 33 1 3.0216 -4.3963 -1.2039 34 1 0.7907 -6.8331 -4.4370 35 1 0.6050 -5.0901 -4.7605 36 1 -0.4883 -6.3714 -6.5590 37 1 -1.7324 -5.5437 -5.5877 38 1 -4.0725 -9.8695 -2.3182 39 1 -3.3237 -8.4515 -0.4479 40 1 -1.7457 -6.6115 -0.8545 41 1 1.4933 -3.0569 -2.9931 42 1 -0.2117 -3.5747 -3.0547 43 1 -0.6514 -2.6466 -0.8519 44 1 0.2094 -1.3903 -1.7791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949221124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:48 Heat of formation + Delta-G solvation = -75.555237 kcal Electronic energy + Delta-G solvation = -29562.055981 eV Core-core repulsion = 25394.291532 eV Total energy + Delta-G solvation = -4167.764449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84168 -42.22549 -40.62860 -38.66522 -38.32460 -35.70957 -35.24491 -33.13379 -31.91007 -31.80765 -30.89794 -28.97145 -27.43854 -25.42286 -25.02594 -24.51350 -23.66461 -22.43548 -21.30159 -20.19010 -19.13355 -18.75915 -18.46301 -18.02529 -17.47985 -17.07628 -16.86415 -16.58266 -16.37061 -16.03978 -15.81691 -15.58560 -15.50993 -15.24819 -15.06037 -14.79758 -14.76521 -14.37053 -13.96868 -13.84484 -13.36807 -13.31361 -13.17868 -13.06255 -12.75315 -12.67208 -12.50818 -12.26927 -12.20045 -12.07073 -11.98860 -11.84787 -11.71537 -11.63163 -10.76490 -10.58055 -9.83656 -9.77606 -9.25496 -8.59064 -7.89810 -5.44768 0.04496 0.18791 1.48252 1.50837 1.51881 1.59068 1.92584 2.16216 2.49390 2.53978 3.08473 3.23931 3.26232 3.51502 3.57395 3.61784 3.72470 3.94465 4.00611 4.14093 4.21468 4.24025 4.27267 4.34816 4.38188 4.44604 4.55397 4.58519 4.64249 4.72613 4.78687 4.81236 4.86305 4.95455 5.04024 5.07228 5.19702 5.21225 5.39435 5.51099 5.58160 5.65422 5.65466 6.25541 6.38393 6.44049 7.10143 7.12146 7.76640 8.34051 9.14512 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.002942 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.145036 B = 9515.319162 C = 9778.518320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.036 4.036 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.271 4.271 8 H 0.064 0.936 9 N -0.606 5.606 10 C 0.133 3.867 11 C 0.107 3.893 12 N -0.597 5.597 13 C 0.521 3.479 14 O -0.574 6.574 15 C -0.065 4.065 16 H 0.126 0.874 17 C -0.143 4.143 18 C 0.061 3.939 19 O -0.325 6.325 20 C 0.098 3.902 21 C 0.043 3.957 22 F -0.142 7.142 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.079 4.079 26 C -0.129 4.129 27 C 0.092 3.908 28 C 0.167 3.833 29 H 0.252 0.748 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.087 0.913 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.001 0.999 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -12.910 -10.630 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.401 4.401 8 H 0.082 0.918 9 N -0.330 5.330 10 C 0.007 3.993 11 C -0.018 4.018 12 N -0.328 5.328 13 C 0.310 3.690 14 O -0.454 6.454 15 C -0.086 4.086 16 H 0.143 0.857 17 C -0.181 4.181 18 C -0.013 4.013 19 O -0.240 6.240 20 C 0.052 3.948 21 C 0.023 3.977 22 F -0.120 7.120 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.097 4.097 26 C -0.130 4.130 27 C -0.031 4.031 28 C 0.040 3.960 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.105 0.895 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.019 0.981 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.289 -13.433 -10.488 17.574 hybrid contribution 0.344 1.201 0.490 1.342 sum -3.945 -12.232 -9.998 16.283 Atomic orbital electron populations 1.70149 1.06694 1.26201 1.54263 1.25924 0.95959 1.01559 0.99891 0.85301 0.78034 0.79443 0.77790 1.20613 1.22419 1.19607 1.19415 0.92211 0.85336 1.43155 0.91810 1.44162 1.41926 1.03880 1.43025 1.21346 0.97989 0.86569 0.93416 1.22016 0.89628 0.99952 0.90158 1.48079 1.36497 1.08166 1.40050 1.20551 0.81746 0.82546 0.84182 1.90660 1.66495 1.34102 1.54181 1.20282 0.94312 0.98778 0.95180 0.85666 1.22218 0.98710 1.05294 0.91898 1.23363 0.95174 0.83152 0.99648 1.86019 1.74609 1.38563 1.24785 1.18655 0.95368 0.95804 0.85005 1.17384 1.00244 0.93991 0.86073 1.91454 1.89129 1.73182 1.58275 1.21282 1.00909 1.01453 0.89368 1.21161 0.97896 0.94766 1.00295 1.21088 0.95396 0.97864 0.95391 1.19273 1.00969 0.99483 0.93277 1.22681 1.01754 0.83117 0.95567 1.21011 0.89078 0.97135 0.88766 0.93857 0.97570 0.91192 0.89764 0.90822 0.91211 0.86260 0.83828 0.89515 0.81327 0.82273 0.86603 0.90329 0.87432 0.98130 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.54 11.59 21.65 0.25 -51.29 16 2 C -0.04 -1.90 4.90 84.86 0.42 -1.48 16 3 Si 0.97 42.05 29.58 68.60 2.03 44.08 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.27 -13.94 9.51 84.03 0.80 -13.14 16 8 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 9 N -0.61 -28.34 2.93 -697.34 -2.04 -30.38 16 10 C 0.13 5.38 6.67 86.42 0.58 5.96 16 11 C 0.11 3.61 6.60 86.42 0.57 4.18 16 12 N -0.60 -19.02 2.94 -817.17 -2.40 -21.43 16 13 C 0.52 16.25 6.01 87.66 0.53 16.77 16 14 O -0.57 -21.54 14.43 -3.02 -0.04 -21.59 16 15 C -0.06 -1.58 1.92 -12.24 -0.02 -1.60 16 16 H 0.13 2.67 6.12 -2.39 -0.01 2.65 16 17 C -0.14 -2.69 5.49 30.76 0.17 -2.52 16 18 C 0.06 0.97 7.03 72.12 0.51 1.48 16 19 O -0.33 -7.99 10.09 -92.38 -0.93 -8.92 16 20 C 0.10 2.62 6.48 22.54 0.15 2.76 16 21 C 0.04 1.10 7.30 22.51 0.16 1.27 16 22 F -0.14 -3.80 17.05 44.97 0.77 -3.03 16 23 C -0.11 -2.34 10.02 22.26 0.22 -2.12 16 24 C -0.12 -2.69 10.04 22.25 0.22 -2.46 16 25 C -0.08 -2.13 8.32 22.31 0.19 -1.95 16 26 C -0.13 -3.46 5.12 -19.76 -0.10 -3.56 16 27 C 0.09 2.80 6.47 86.57 0.56 3.36 16 28 C 0.17 7.06 5.48 86.57 0.47 7.53 16 29 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 32 H 0.08 2.84 6.99 -2.38 -0.02 2.83 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 35 H 0.12 1.66 8.11 -2.38 -0.02 1.64 16 36 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.12 3.42 7.11 -2.91 -0.02 3.40 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.11 2.48 5.39 -2.39 -0.01 2.47 16 43 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.07 3.11 6.45 -2.39 -0.02 3.09 16 Total: -1.00 -67.74 354.65 4.07 -63.68 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.03 Total: 14.39 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 5.42 Total: 14.49 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -4.19 Total: -103.10 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.98 Total: -30.51 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.77 Total: -3.03 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -67.74 4.07 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949221124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.880 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds