Wall clock time and date at job start Tue Mar 31 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00029 * 2 1 4 4 H 1.48488 * 109.47296 * 269.99922 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00388 * 3 2 1 6 6 H 1.48507 * 109.46627 * 149.99741 * 3 2 1 7 7 C 1.38817 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00005 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99563 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99827 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.35132 * 32.86792 * 10 9 7 12 12 C 1.51375 * 110.30242 * 270.74134 * 10 9 7 13 13 C 1.38495 * 130.38642 * 78.24228 * 12 10 9 14 14 C 1.38102 * 120.21638 * 180.02562 * 13 12 10 15 15 C 1.38254 * 119.93416 * 0.02562 * 14 13 12 16 16 C 1.38105 * 119.93287 * 359.97438 * 15 14 13 17 17 C 1.38210 * 109.76083 * 258.27434 * 12 10 9 18 18 C 1.51365 * 109.76092 * 359.97438 * 17 12 10 19 19 C 1.54347 * 105.17158 * 342.82278 * 18 17 12 20 20 H 1.08999 * 110.82422 * 144.56644 * 19 18 17 21 21 N 1.46495 * 110.82401 * 268.11849 * 19 18 17 22 22 C 1.34780 * 120.00078 * 273.54517 * 21 19 18 23 23 O 1.21280 * 119.99888 * 359.97438 * 22 21 19 24 24 C 1.50694 * 120.00374 * 180.02562 * 22 21 19 25 25 F 1.39910 * 110.75222 * 54.29611 * 24 22 21 26 26 C 1.55303 * 110.84956 * 177.76698 * 24 22 21 27 27 C 1.55210 * 100.82401 * 152.17606 * 26 24 22 28 28 O 1.43640 * 105.26423 * 323.82078 * 27 26 24 29 29 C 1.43233 * 109.97111 * 24.28299 * 28 27 26 30 30 H 0.97003 * 120.00048 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99917 * 359.97438 * 9 7 2 32 32 H 1.08005 * 119.89008 * 0.04352 * 13 12 10 33 33 H 1.08009 * 120.03666 * 180.02562 * 14 13 12 34 34 H 1.07994 * 120.03343 * 179.97438 * 15 14 13 35 35 H 1.07999 * 119.88724 * 180.02562 * 16 15 14 36 36 H 1.08998 * 110.30536 * 223.90199 * 18 17 12 37 37 H 1.08997 * 110.30462 * 101.74776 * 18 17 12 38 38 H 0.96999 * 120.00580 * 93.54829 * 21 19 18 39 39 H 1.08998 * 111.12680 * 270.24084 * 26 24 22 40 40 H 1.08994 * 111.12326 * 34.40775 * 26 24 22 41 41 H 1.09004 * 110.36830 * 204.79858 * 27 26 24 42 42 H 1.09002 * 110.21262 * 82.75823 * 27 26 24 43 43 H 1.09004 * 109.83317 * 238.77823 * 29 28 27 44 44 H 1.08997 * 109.90801 * 117.84594 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.3999 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 -0.0011 11 1 3.5584 -3.2278 -0.5568 12 6 4.3582 -2.9366 1.4180 13 6 3.5081 -3.5549 2.3198 14 6 3.9593 -3.8934 3.5804 15 6 5.2634 -3.6141 3.9445 16 6 6.1126 -2.9976 3.0466 17 6 5.6621 -2.6576 1.7818 18 6 6.3817 -1.9860 0.6319 19 6 5.5164 -2.2787 -0.6122 20 1 5.5273 -1.4327 -1.2994 21 7 5.9648 -3.5017 -1.2825 22 6 6.9535 -3.4454 -2.1968 23 8 7.4715 -2.3821 -2.4650 24 6 7.4144 -4.7033 -2.8867 25 9 6.3359 -5.3646 -3.4843 26 6 8.5174 -4.3874 -3.9333 27 6 9.3003 -5.7275 -3.9453 28 8 9.2759 -6.1919 -2.5863 29 6 8.1501 -5.6339 -1.8987 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 0.0004 32 1 2.4892 -3.7733 2.0361 33 1 3.2939 -4.3759 4.2812 34 1 5.6177 -3.8778 4.9300 35 1 7.1313 -2.7801 3.3317 36 1 7.3775 -2.4117 0.5086 37 1 6.4474 -0.9115 0.8027 38 1 5.5502 -4.3521 -1.0683 39 1 8.0829 -4.1737 -4.9098 40 1 9.1519 -3.5664 -3.5995 41 1 10.3276 -5.5639 -4.2709 42 1 8.8066 -6.4461 -4.5996 43 1 8.4904 -5.0617 -1.0356 44 1 7.4814 -6.4308 -1.5735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960298648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:07 Heat of formation + Delta-G solvation = -76.799654 kcal Electronic energy + Delta-G solvation = -29300.829118 eV Core-core repulsion = 25133.010707 eV Total energy + Delta-G solvation = -4167.818411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.29208 -40.61099 -39.69123 -38.65937 -36.39872 -34.29270 -32.86326 -32.11075 -31.37238 -30.20632 -29.89731 -27.96699 -26.46934 -24.30454 -23.17166 -22.64763 -22.00588 -20.86241 -20.39240 -20.07513 -18.46985 -17.83683 -17.36204 -16.66793 -16.15302 -15.79462 -15.69003 -15.19370 -15.13738 -14.96952 -14.62755 -14.53740 -14.38642 -13.95775 -13.85085 -13.45464 -13.23351 -13.07452 -12.89816 -12.70240 -12.53447 -12.15362 -11.97118 -11.86248 -11.72093 -11.42269 -11.29389 -11.22738 -10.93753 -10.76776 -10.50791 -10.25544 -10.13657 -9.98239 -9.71434 -9.28493 -9.08779 -8.45977 -8.25897 -7.46802 -5.89379 -3.27398 1.68526 1.75364 2.14203 2.67505 3.26920 3.31559 3.34148 3.39655 3.53321 3.88253 4.09055 4.25728 4.34570 4.48893 4.51400 4.55699 4.74939 4.84672 5.12357 5.16886 5.25857 5.27194 5.29504 5.31562 5.33437 5.38814 5.40587 5.54069 5.60123 5.62806 5.80380 5.89348 5.93576 6.05052 6.15898 6.32586 6.38148 6.42280 6.51469 6.75932 6.85977 7.07213 7.22442 7.35410 7.81487 7.85385 8.27694 9.02973 9.75538 9.92151 11.27811 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.003906 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.577482 B = 7167.129683 C = 8556.954190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.727 5.727 10 C 0.213 3.787 11 H 0.075 0.925 12 C -0.096 4.096 13 C -0.084 4.084 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.114 4.114 17 C -0.101 4.101 18 C -0.086 4.086 19 C 0.131 3.869 20 H 0.109 0.891 21 N -0.698 5.698 22 C 0.512 3.488 23 O -0.516 6.516 24 C 0.067 3.933 25 F -0.179 7.179 26 C -0.159 4.159 27 C 0.049 3.951 28 O -0.372 6.372 29 C 0.042 3.958 30 H 0.262 0.738 31 H 0.365 0.635 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.405 0.595 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.823 -12.202 -1.650 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.183 4.183 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.111 0.889 9 N -0.368 5.368 10 C 0.102 3.898 11 H 0.092 0.908 12 C -0.100 4.100 13 C -0.103 4.103 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.133 4.133 17 C -0.102 4.102 18 C -0.125 4.125 19 C 0.026 3.974 20 H 0.127 0.873 21 N -0.348 5.348 22 C 0.294 3.706 23 O -0.391 6.391 24 C 0.045 3.955 25 F -0.159 7.159 26 C -0.197 4.197 27 C -0.027 4.027 28 O -0.291 6.291 29 C -0.036 4.036 30 H 0.072 0.928 31 H 0.199 0.801 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.240 0.760 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.001 -11.594 -1.803 21.487 hybrid contribution -0.113 1.003 0.249 1.040 sum 17.887 -10.590 -1.555 20.845 Atomic orbital electron populations 1.69691 1.05091 1.26109 1.56357 1.24641 0.95195 0.97215 1.01271 0.86621 0.79375 0.85013 0.78009 1.20764 1.21498 1.20191 1.19000 0.79846 0.94920 1.44213 0.88897 1.42606 1.04169 1.00928 1.89124 1.19746 0.89815 0.90482 0.89715 0.90761 1.21594 0.93201 0.95844 0.99345 1.20682 0.99391 0.97402 0.92814 1.21020 0.95810 1.01195 0.96333 1.20889 0.94204 1.00654 0.98945 1.20470 0.99386 1.00502 0.92893 1.20488 0.95584 0.99391 0.94693 1.21403 0.98390 1.00894 0.91775 1.22028 0.94550 0.87299 0.93555 0.87348 1.45874 1.36603 1.11874 1.40456 1.20175 0.80669 0.89689 0.80064 1.90752 1.55358 1.29439 1.63572 1.22706 0.86369 0.91415 0.95009 1.92965 1.56480 1.81632 1.84836 1.23790 0.96186 0.99976 0.99739 1.23555 1.01639 0.93630 0.83877 1.88450 1.46285 1.70721 1.23647 1.23710 0.88735 0.96558 0.94587 0.92814 0.80136 0.86090 0.86462 0.86648 0.87095 0.90801 0.89443 0.75951 0.87823 0.86933 0.88473 0.91257 0.88938 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.97 55.49 0.78 -27.40 16 2 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 3 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.25 -6.69 10.44 -15.06 -0.16 -6.85 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.73 -16.29 4.93 -53.53 -0.26 -16.56 16 10 C 0.21 3.83 3.12 -68.04 -0.21 3.61 16 11 H 0.07 1.34 7.99 -51.93 -0.42 0.93 16 12 C -0.10 -1.64 5.77 -104.21 -0.60 -2.24 16 13 C -0.08 -1.41 10.04 -39.54 -0.40 -1.81 16 14 C -0.13 -1.81 10.05 -39.63 -0.40 -2.21 16 15 C -0.13 -1.72 10.05 -39.62 -0.40 -2.12 16 16 C -0.11 -1.59 10.04 -39.53 -0.40 -1.98 16 17 C -0.10 -1.54 6.14 -104.21 -0.64 -2.18 16 18 C -0.09 -1.24 6.48 -26.85 -0.17 -1.41 16 19 C 0.13 2.00 2.94 -66.52 -0.20 1.80 16 20 H 0.11 1.84 7.64 -51.93 -0.40 1.44 16 21 N -0.70 -8.85 5.14 -52.44 -0.27 -9.11 16 22 C 0.51 6.61 6.77 -10.99 -0.07 6.54 16 23 O -0.52 -8.12 15.42 5.56 0.09 -8.03 16 24 C 0.07 0.70 1.44 -89.83 -0.13 0.57 16 25 F -0.18 -2.05 16.97 2.25 0.04 -2.01 16 26 C -0.16 -1.43 6.13 -24.34 -0.15 -1.58 16 27 C 0.05 0.39 7.78 38.33 0.30 0.68 16 28 O -0.37 -3.77 11.36 -35.23 -0.40 -4.17 16 29 C 0.04 0.38 7.22 37.88 0.27 0.66 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.37 8.17 5.69 -40.82 -0.23 7.94 16 32 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 33 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.41 4.41 8.58 -40.82 -0.35 4.06 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 1.07 7.34 -51.93 -0.38 0.69 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.81 7.81 -51.93 -0.41 0.40 16 44 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.08 368.57 -8.64 -40.71 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.00 Total: 12.36 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.45 Total: -8.23 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.24 Total: -53.07 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.31 Total: -12.20 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.08 -8.64 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960298648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.085 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds