Wall clock time and date at job start Tue Mar 31 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00029 * 2 1 4 4 H 1.48488 * 109.47296 * 269.99922 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00388 * 3 2 1 6 6 H 1.48507 * 109.46627 * 149.99741 * 3 2 1 7 7 C 1.38817 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00005 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99563 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99827 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.35132 * 32.86792 * 10 9 7 12 12 C 1.51375 * 110.30242 * 270.74134 * 10 9 7 13 13 C 1.38495 * 130.38642 * 78.24228 * 12 10 9 14 14 C 1.38102 * 120.21638 * 180.02562 * 13 12 10 15 15 C 1.38254 * 119.93416 * 0.02562 * 14 13 12 16 16 C 1.38105 * 119.93287 * 359.97438 * 15 14 13 17 17 C 1.38210 * 109.76083 * 258.27434 * 12 10 9 18 18 C 1.51365 * 109.76092 * 359.97438 * 17 12 10 19 19 C 1.54347 * 105.17158 * 342.82278 * 18 17 12 20 20 H 1.08999 * 110.82422 * 144.56644 * 19 18 17 21 21 N 1.46495 * 110.82401 * 268.11849 * 19 18 17 22 22 C 1.34780 * 120.00078 * 273.54517 * 21 19 18 23 23 O 1.21280 * 119.99888 * 359.97438 * 22 21 19 24 24 C 1.50694 * 120.00374 * 180.02562 * 22 21 19 25 25 F 1.39910 * 110.75222 * 54.29611 * 24 22 21 26 26 C 1.55303 * 110.84956 * 177.76698 * 24 22 21 27 27 C 1.55210 * 100.82401 * 152.17606 * 26 24 22 28 28 O 1.43640 * 105.26423 * 323.82078 * 27 26 24 29 29 C 1.43233 * 109.97111 * 24.28299 * 28 27 26 30 30 H 0.97003 * 120.00048 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99917 * 359.97438 * 9 7 2 32 32 H 1.08005 * 119.89008 * 0.04352 * 13 12 10 33 33 H 1.08009 * 120.03666 * 180.02562 * 14 13 12 34 34 H 1.07994 * 120.03343 * 179.97438 * 15 14 13 35 35 H 1.07999 * 119.88724 * 180.02562 * 16 15 14 36 36 H 1.08998 * 110.30536 * 223.90199 * 18 17 12 37 37 H 1.08997 * 110.30462 * 101.74776 * 18 17 12 38 38 H 0.96999 * 120.00580 * 93.54829 * 21 19 18 39 39 H 1.08998 * 111.12680 * 270.24084 * 26 24 22 40 40 H 1.08994 * 111.12326 * 34.40775 * 26 24 22 41 41 H 1.09004 * 110.36830 * 204.79858 * 27 26 24 42 42 H 1.09002 * 110.21262 * 82.75823 * 27 26 24 43 43 H 1.09004 * 109.83317 * 238.77823 * 29 28 27 44 44 H 1.08997 * 109.90801 * 117.84594 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.3999 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 -0.0011 11 1 3.5584 -3.2278 -0.5568 12 6 4.3582 -2.9366 1.4180 13 6 3.5081 -3.5549 2.3198 14 6 3.9593 -3.8934 3.5804 15 6 5.2634 -3.6141 3.9445 16 6 6.1126 -2.9976 3.0466 17 6 5.6621 -2.6576 1.7818 18 6 6.3817 -1.9860 0.6319 19 6 5.5164 -2.2787 -0.6122 20 1 5.5273 -1.4327 -1.2994 21 7 5.9648 -3.5017 -1.2825 22 6 6.9535 -3.4454 -2.1968 23 8 7.4715 -2.3821 -2.4650 24 6 7.4144 -4.7033 -2.8867 25 9 6.3359 -5.3646 -3.4843 26 6 8.5174 -4.3874 -3.9333 27 6 9.3003 -5.7275 -3.9453 28 8 9.2759 -6.1919 -2.5863 29 6 8.1501 -5.6339 -1.8987 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 0.0004 32 1 2.4892 -3.7733 2.0361 33 1 3.2939 -4.3759 4.2812 34 1 5.6177 -3.8778 4.9300 35 1 7.1313 -2.7801 3.3317 36 1 7.3775 -2.4117 0.5086 37 1 6.4474 -0.9115 0.8027 38 1 5.5502 -4.3521 -1.0683 39 1 8.0829 -4.1737 -4.9098 40 1 9.1519 -3.5664 -3.5995 41 1 10.3276 -5.5639 -4.2709 42 1 8.8066 -6.4461 -4.5996 43 1 8.4904 -5.0617 -1.0356 44 1 7.4814 -6.4308 -1.5735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960298648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:06 Heat of formation + Delta-G solvation = -98.224722 kcal Electronic energy + Delta-G solvation = -29301.758179 eV Core-core repulsion = 25133.010707 eV Total energy + Delta-G solvation = -4168.747472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.17572 -41.76562 -40.70288 -39.55248 -37.68043 -35.92239 -34.21716 -33.12794 -32.86584 -31.63808 -30.65967 -29.10483 -27.93918 -25.44667 -24.50818 -23.75167 -23.08275 -21.94094 -21.72680 -21.20377 -19.93559 -19.23359 -18.21389 -17.77785 -17.22506 -16.98554 -16.50529 -16.43396 -16.23279 -16.03532 -15.87080 -15.74624 -15.60863 -15.45265 -14.84912 -14.71044 -14.43128 -14.30657 -14.16033 -14.03412 -13.60308 -13.43791 -13.08775 -12.92920 -12.81128 -12.70813 -12.64731 -12.45490 -12.21854 -12.09306 -12.02426 -11.83613 -11.69688 -11.17035 -11.05184 -10.69937 -10.40666 -9.67756 -9.51320 -9.35918 -8.06834 -5.42191 0.50754 0.56172 1.10724 1.34839 1.36985 1.43325 1.64468 2.43563 2.55828 2.71807 2.88700 3.09315 3.23958 3.27084 3.37391 3.57450 3.63585 3.79244 3.82898 3.96979 4.10688 4.12300 4.23042 4.29288 4.38891 4.46678 4.55773 4.61905 4.68998 4.69475 4.73238 4.75962 4.83517 4.90060 4.93855 5.16767 5.22702 5.29595 5.62044 5.67913 5.70070 5.71643 5.84834 6.14830 6.18016 6.19977 6.81162 6.99198 7.71686 7.90559 9.13834 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.003906 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.577482 B = 7167.129683 C = 8556.954190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.054 4.054 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.227 4.227 8 H 0.062 0.938 9 N -0.734 5.734 10 C 0.210 3.790 11 H 0.063 0.937 12 C -0.119 4.119 13 C -0.109 4.109 14 C -0.128 4.128 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.101 4.101 18 C -0.079 4.079 19 C 0.142 3.858 20 H 0.091 0.909 21 N -0.691 5.691 22 C 0.513 3.487 23 O -0.544 6.544 24 C 0.068 3.932 25 F -0.185 7.185 26 C -0.158 4.158 27 C 0.050 3.950 28 O -0.387 6.387 29 C 0.045 3.955 30 H 0.258 0.742 31 H 0.367 0.633 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.414 0.586 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.184 -12.889 -0.538 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.246 4.246 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.179 1.179 7 C -0.358 4.358 8 H 0.080 0.920 9 N -0.375 5.375 10 C 0.100 3.900 11 H 0.080 0.920 12 C -0.121 4.121 13 C -0.128 4.128 14 C -0.146 4.146 15 C -0.137 4.137 16 C -0.131 4.131 17 C -0.102 4.102 18 C -0.117 4.117 19 C 0.036 3.964 20 H 0.109 0.891 21 N -0.342 5.342 22 C 0.297 3.703 23 O -0.421 6.421 24 C 0.046 3.954 25 F -0.165 7.165 26 C -0.196 4.196 27 C -0.026 4.026 28 O -0.306 6.306 29 C -0.032 4.032 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.118 0.882 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.251 0.749 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.421 -12.344 -0.685 24.732 hybrid contribution -1.140 1.043 -0.077 1.548 sum 20.280 -11.301 -0.762 23.229 Atomic orbital electron populations 1.69858 1.06948 1.26678 1.59263 1.25374 0.95962 1.00823 1.02409 0.85571 0.78767 0.80339 0.78135 1.20412 1.22177 1.17903 1.18928 0.81815 0.93571 1.41483 0.91981 1.42535 1.02684 1.02775 1.89554 1.19871 0.90784 0.88303 0.91000 0.91953 1.21360 0.94598 0.97816 0.98369 1.20742 0.98724 0.98965 0.94378 1.21285 0.97025 1.00800 0.95481 1.21321 0.93254 0.98871 1.00257 1.20858 1.00891 0.99359 0.91980 1.20622 0.94659 0.99232 0.95691 1.21350 0.98811 1.00939 0.90589 1.21683 0.93126 0.87767 0.93840 0.89063 1.45772 1.36634 1.11463 1.40354 1.20575 0.80008 0.90224 0.79514 1.90740 1.56292 1.30738 1.64363 1.22734 0.86384 0.90489 0.95776 1.92957 1.56995 1.81607 1.84973 1.23828 0.95669 1.00629 0.99496 1.23705 1.02851 0.92892 0.83112 1.88432 1.46480 1.71038 1.24682 1.23747 0.88659 0.96650 0.94189 0.93254 0.79959 0.88232 0.84434 0.83115 0.84087 0.88931 0.89477 0.74887 0.87253 0.87404 0.86389 0.90375 0.88327 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.84 13.97 21.65 0.30 -61.54 16 2 C -0.05 -3.11 5.50 84.86 0.47 -2.65 16 3 Si 0.94 45.28 27.74 68.60 1.90 47.18 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.25 -11.12 6.52 99.48 0.65 -10.48 16 7 C -0.23 -12.60 10.44 84.03 0.88 -11.72 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 9 N -0.73 -33.35 4.93 -323.28 -1.59 -34.95 16 10 C 0.21 7.64 3.12 44.92 0.14 7.78 16 11 H 0.06 2.37 7.99 -2.39 -0.02 2.35 16 12 C -0.12 -4.00 5.77 -19.59 -0.11 -4.12 16 13 C -0.11 -3.68 10.04 22.30 0.22 -3.46 16 14 C -0.13 -3.45 10.05 22.24 0.22 -3.22 16 15 C -0.12 -2.72 10.05 22.24 0.22 -2.50 16 16 C -0.11 -2.70 10.04 22.30 0.22 -2.47 16 17 C -0.10 -2.88 6.14 -19.60 -0.12 -3.00 16 18 C -0.08 -2.10 6.48 30.52 0.20 -1.90 16 19 C 0.14 4.25 2.94 45.91 0.13 4.39 16 20 H 0.09 3.09 7.64 -2.39 -0.02 3.07 16 21 N -0.69 -16.98 5.14 -438.21 -2.25 -19.24 16 22 C 0.51 12.72 6.77 87.65 0.59 13.31 16 23 O -0.54 -16.65 15.42 -3.03 -0.05 -16.70 16 24 C 0.07 1.33 1.44 -10.28 -0.01 1.31 16 25 F -0.18 -4.01 16.97 44.97 0.76 -3.25 16 26 C -0.16 -2.60 6.13 32.14 0.20 -2.40 16 27 C 0.05 0.67 7.78 72.74 0.57 1.24 16 28 O -0.39 -6.95 11.36 -148.98 -1.69 -8.64 16 29 C 0.04 0.73 7.22 72.45 0.52 1.25 16 30 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.37 16.28 5.69 -92.71 -0.53 15.75 16 32 H 0.10 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.41 8.74 8.58 -92.71 -0.80 7.94 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.90 7.34 -2.39 -0.02 1.88 16 41 H 0.12 1.08 8.14 -2.38 -0.02 1.07 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 1.48 7.81 -2.38 -0.02 1.46 16 44 H 0.11 1.45 8.11 -2.39 -0.02 1.43 16 Total: -1.00 -71.06 368.57 1.38 -69.67 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.34 Total: 35.62 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.34 Total: -8.16 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -3.55 Total: -115.73 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.74 Total: -25.34 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.76 Total: -3.25 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -71.06 1.38 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960298648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.553 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds