Wall clock time and date at job start Tue Mar 31 2020 18:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00375 * 2 1 4 4 H 1.48496 * 109.47006 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46816 * 299.99579 * 3 2 1 6 6 H 1.48498 * 109.47364 * 59.99263 * 3 2 1 7 7 C 1.38816 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99887 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99353 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.64458 * 31.85673 * 10 9 7 12 12 C 1.55157 * 110.71873 * 268.51995 * 10 9 7 13 13 C 1.55132 * 101.48674 * 205.96906 * 12 10 9 14 14 N 1.47432 * 104.72078 * 37.29627 * 13 12 10 15 15 C 1.34771 * 125.64641 * 155.81524 * 14 13 12 16 16 O 1.21285 * 119.99482 * 184.88322 * 15 14 13 17 17 C 1.50697 * 120.00382 * 4.88322 * 15 14 13 18 18 H 1.09001 * 109.40302 * 24.33958 * 17 15 14 19 19 C 1.53069 * 109.44089 * 264.44374 * 17 15 14 20 20 C 1.53409 * 108.29260 * 191.66131 * 19 17 15 21 21 O 1.42824 * 108.38644 * 64.68036 * 20 19 17 22 22 C 1.35899 * 117.87094 * 310.91242 * 21 20 19 23 23 C 1.39350 * 118.49874 * 197.10123 * 22 21 20 24 24 F 1.35099 * 119.90861 * 0.23044 * 23 22 21 25 25 C 1.38131 * 120.17558 * 180.23568 * 23 22 21 26 26 C 1.38299 * 119.93439 * 0.02562 * 25 23 22 27 27 C 1.38079 * 119.99857 * 359.90649 * 26 25 23 28 28 C 1.38281 * 121.81845 * 17.17314 * 22 21 20 29 29 C 1.47026 * 108.69936 * 335.55550 * 14 13 12 30 30 H 0.97011 * 119.99377 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00651 * 0.02562 * 9 7 2 32 32 H 1.09000 * 111.00594 * 324.21057 * 12 10 9 33 33 H 1.09006 * 111.00477 * 88.02695 * 12 10 9 34 34 H 1.08992 * 110.49657 * 278.45562 * 13 12 10 35 35 H 1.08997 * 110.34156 * 156.05764 * 13 12 10 36 36 H 1.09001 * 109.70416 * 71.95731 * 19 17 15 37 37 H 1.09009 * 109.69573 * 311.35647 * 19 17 15 38 38 H 1.08997 * 109.68697 * 184.40660 * 20 19 17 39 39 H 1.09006 * 109.67765 * 304.92244 * 20 19 17 40 40 H 1.08000 * 120.03426 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.00547 * 179.97438 * 26 25 23 42 42 H 1.07996 * 119.82307 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.88422 * 120.70678 * 29 14 13 44 44 H 1.09008 * 109.87654 * 241.86711 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2127 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 3.0002 -3.5565 0.5389 12 6 2.2998 -4.1510 -1.4502 13 6 2.4216 -5.6829 -1.2385 14 7 1.4362 -5.9954 -0.1874 15 6 0.8546 -7.1946 0.0125 16 8 -0.0103 -7.3163 0.8540 17 6 1.2789 -8.3843 -0.8094 18 1 2.2947 -8.2294 -1.1731 19 6 0.3306 -8.5451 -2.0002 20 6 0.5963 -9.9109 -2.6462 21 8 0.2492 -10.9290 -1.7066 22 6 0.7352 -10.8190 -0.4422 23 6 0.7216 -11.9470 0.3758 24 9 0.2366 -13.1160 -0.0968 25 6 1.2027 -11.8731 1.6685 26 6 1.6987 -10.6764 2.1529 27 6 1.7144 -9.5576 1.3438 28 6 1.2357 -9.6256 0.0452 29 6 1.1979 -4.7837 0.6105 30 1 -0.4850 0.8402 -0.0004 31 1 0.3554 -2.3880 -0.0002 32 1 1.4530 -3.9080 -2.0921 33 1 3.2246 -3.7389 -1.8542 34 1 3.4264 -5.9436 -0.9061 35 1 2.1760 -6.2133 -2.1585 36 1 0.5146 -7.7532 -2.7262 37 1 -0.7027 -8.4962 -1.6562 38 1 -0.0125 -10.0171 -3.5441 39 1 1.6515 -9.9949 -2.9062 40 1 1.1907 -12.7486 2.3007 41 1 2.0747 -10.6171 3.1636 42 1 2.1020 -8.6245 1.7251 43 1 0.1434 -4.5113 0.5651 44 1 1.4938 -4.9571 1.6452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969283921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:31 Heat of formation + Delta-G solvation = -72.888877 kcal Electronic energy + Delta-G solvation = -28698.553529 eV Core-core repulsion = 24530.904702 eV Total energy + Delta-G solvation = -4167.648827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.95317 -41.30826 -39.60306 -37.84250 -37.36519 -34.50553 -34.09826 -31.55410 -31.11201 -30.12208 -29.61729 -28.24140 -26.45626 -24.32845 -23.84065 -23.02463 -22.60176 -20.90486 -20.09271 -19.24108 -18.21259 -17.61197 -17.46682 -17.42918 -16.72837 -16.11939 -15.92003 -15.43237 -15.22740 -15.08427 -14.84054 -14.59240 -14.19606 -14.05719 -13.59621 -13.38369 -13.35478 -13.19045 -12.80427 -12.64852 -12.54276 -12.31647 -12.00703 -11.87773 -11.73090 -11.39716 -11.28039 -11.23152 -11.03896 -10.90982 -10.78978 -10.41030 -10.12739 -9.85385 -9.73103 -9.04649 -8.97985 -8.52734 -8.44358 -7.11867 -5.88471 -3.19597 0.84267 0.99357 2.54299 2.81749 2.95110 3.34421 3.36300 3.41992 3.44455 3.93052 4.08215 4.27346 4.36774 4.48802 4.50172 4.67223 4.75773 4.86111 4.92175 4.94545 5.02436 5.11830 5.14534 5.19833 5.25735 5.39716 5.47487 5.50468 5.61900 5.66962 5.68728 5.81715 5.86365 5.97725 6.04935 6.14787 6.16705 6.27097 6.38715 6.46327 6.51673 6.80104 7.02220 7.57910 7.59691 8.16816 8.28644 9.40318 9.93945 10.28351 11.33614 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.002360 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.127835 B =11859.519553 C =12295.130285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.154 4.154 13 C 0.095 3.905 14 N -0.611 5.611 15 C 0.533 3.467 16 O -0.531 6.531 17 C -0.061 4.061 18 H 0.106 0.894 19 C -0.151 4.151 20 C 0.065 3.935 21 O -0.308 6.308 22 C 0.109 3.891 23 C 0.066 3.934 24 F -0.134 7.134 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.071 4.071 28 C -0.116 4.116 29 C 0.099 3.901 30 H 0.257 0.743 31 H 0.386 0.614 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 -23.153 -3.345 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.196 4.196 13 C -0.028 4.028 14 N -0.345 5.345 15 C 0.320 3.680 16 O -0.407 6.407 17 C -0.082 4.082 18 H 0.124 0.876 19 C -0.189 4.189 20 C -0.010 4.010 21 O -0.222 6.222 22 C 0.062 3.938 23 C 0.046 3.954 24 F -0.112 7.112 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.090 4.090 28 C -0.117 4.117 29 C -0.024 4.024 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.523 -23.289 -2.959 24.117 hybrid contribution 0.151 1.072 -0.181 1.098 sum 5.674 -22.217 -3.140 23.144 Atomic orbital electron populations 1.69680 1.05188 1.25848 1.56901 1.24791 0.95533 0.97885 1.02434 0.86099 0.78765 0.83893 0.77265 1.20461 1.21777 1.21754 1.19257 0.91069 0.83775 1.43646 0.90872 1.42383 1.05836 0.99382 1.87935 1.21185 0.94590 0.85708 0.92497 0.91464 1.23617 1.02861 0.91404 1.01697 1.22497 0.91873 0.98262 0.90153 1.48511 1.43040 1.09734 1.33187 1.19755 0.81815 0.82543 0.83867 1.90742 1.30688 1.84107 1.35155 1.20151 1.01839 0.90988 0.95199 0.87573 1.22226 1.01049 0.98767 0.96872 1.23041 1.01725 0.85403 0.90802 1.86051 1.69717 1.48989 1.17451 1.18543 0.97462 0.92234 0.85516 1.17076 1.04629 0.80317 0.93330 1.91488 1.85997 1.45000 1.88761 1.20987 0.99783 0.99909 0.93217 1.20866 1.01105 0.91708 1.00400 1.20973 0.97029 0.98870 0.92083 1.19149 1.04081 0.92339 0.96130 1.22389 1.01583 0.83847 0.94590 0.93344 0.77922 0.90573 0.90433 0.91435 0.91379 0.88625 0.89234 0.86595 0.91189 0.84065 0.84621 0.85352 0.91004 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -16.80 5.22 -51.65 -0.27 -17.07 16 10 C 0.17 3.08 3.61 -66.10 -0.24 2.85 16 11 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 12 C -0.15 -2.28 6.78 -24.46 -0.17 -2.44 16 13 C 0.10 1.08 6.17 -2.40 -0.01 1.06 16 14 N -0.61 -8.57 3.32 -170.38 -0.57 -9.13 16 15 C 0.53 7.66 5.79 -10.99 -0.06 7.60 16 16 O -0.53 -9.73 16.18 5.55 0.09 -9.64 16 17 C -0.06 -0.66 2.16 -92.85 -0.20 -0.86 16 18 H 0.11 0.90 7.09 -51.93 -0.37 0.53 16 19 C -0.15 -1.41 5.49 -26.48 -0.15 -1.56 16 20 C 0.07 0.52 7.03 37.37 0.26 0.78 16 21 O -0.31 -3.64 10.09 -19.42 -0.20 -3.84 16 22 C 0.11 1.34 6.48 -39.15 -0.25 1.09 16 23 C 0.07 0.80 7.30 -39.21 -0.29 0.51 16 24 F -0.13 -1.70 17.05 2.25 0.04 -1.67 16 25 C -0.12 -1.18 10.02 -39.60 -0.40 -1.58 16 26 C -0.12 -1.19 10.04 -39.62 -0.40 -1.59 16 27 C -0.07 -0.82 8.58 -39.52 -0.34 -1.15 16 28 C -0.12 -1.38 5.12 -104.45 -0.53 -1.92 16 29 C 0.10 1.66 6.62 -3.06 -0.02 1.64 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 9.85 7.56 -40.82 -0.31 9.55 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.61 7.41 -51.93 -0.38 0.22 16 36 H 0.10 0.71 7.90 -51.93 -0.41 0.30 16 37 H 0.09 1.03 8.10 -51.92 -0.42 0.60 16 38 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.46 7.33 -52.49 -0.38 1.08 16 43 H 0.07 1.36 7.72 -51.93 -0.40 0.96 16 44 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -32.47 364.75 -8.77 -41.24 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.03 Total: 7.12 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -3.04 Total: -2.52 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.11 Total: -52.67 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.11 Total: -13.48 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.47 -8.77 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969283921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.647 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds