Wall clock time and date at job start Tue Mar 31 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00375 * 2 1 4 4 H 1.48496 * 109.47006 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46816 * 299.99579 * 3 2 1 6 6 H 1.48498 * 109.47364 * 59.99263 * 3 2 1 7 7 C 1.38816 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99887 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99353 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.64458 * 31.85673 * 10 9 7 12 12 C 1.55157 * 110.71873 * 268.51995 * 10 9 7 13 13 C 1.55132 * 101.48674 * 205.96906 * 12 10 9 14 14 N 1.47432 * 104.72078 * 37.29627 * 13 12 10 15 15 C 1.34771 * 125.64641 * 155.81524 * 14 13 12 16 16 O 1.21285 * 119.99482 * 184.88322 * 15 14 13 17 17 C 1.50697 * 120.00382 * 4.88322 * 15 14 13 18 18 H 1.09001 * 109.40302 * 24.33958 * 17 15 14 19 19 C 1.53069 * 109.44089 * 264.44374 * 17 15 14 20 20 C 1.53409 * 108.29260 * 191.66131 * 19 17 15 21 21 O 1.42824 * 108.38644 * 64.68036 * 20 19 17 22 22 C 1.35899 * 117.87094 * 310.91242 * 21 20 19 23 23 C 1.39350 * 118.49874 * 197.10123 * 22 21 20 24 24 F 1.35099 * 119.90861 * 0.23044 * 23 22 21 25 25 C 1.38131 * 120.17558 * 180.23568 * 23 22 21 26 26 C 1.38299 * 119.93439 * 0.02562 * 25 23 22 27 27 C 1.38079 * 119.99857 * 359.90649 * 26 25 23 28 28 C 1.38281 * 121.81845 * 17.17314 * 22 21 20 29 29 C 1.47026 * 108.69936 * 335.55550 * 14 13 12 30 30 H 0.97011 * 119.99377 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00651 * 0.02562 * 9 7 2 32 32 H 1.09000 * 111.00594 * 324.21057 * 12 10 9 33 33 H 1.09006 * 111.00477 * 88.02695 * 12 10 9 34 34 H 1.08992 * 110.49657 * 278.45562 * 13 12 10 35 35 H 1.08997 * 110.34156 * 156.05764 * 13 12 10 36 36 H 1.09001 * 109.70416 * 71.95731 * 19 17 15 37 37 H 1.09009 * 109.69573 * 311.35647 * 19 17 15 38 38 H 1.08997 * 109.68697 * 184.40660 * 20 19 17 39 39 H 1.09006 * 109.67765 * 304.92244 * 20 19 17 40 40 H 1.08000 * 120.03426 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.00547 * 179.97438 * 26 25 23 42 42 H 1.07996 * 119.82307 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.88422 * 120.70678 * 29 14 13 44 44 H 1.09008 * 109.87654 * 241.86711 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2127 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 3.0002 -3.5565 0.5389 12 6 2.2998 -4.1510 -1.4502 13 6 2.4216 -5.6829 -1.2385 14 7 1.4362 -5.9954 -0.1874 15 6 0.8546 -7.1946 0.0125 16 8 -0.0103 -7.3163 0.8540 17 6 1.2789 -8.3843 -0.8094 18 1 2.2947 -8.2294 -1.1731 19 6 0.3306 -8.5451 -2.0002 20 6 0.5963 -9.9109 -2.6462 21 8 0.2492 -10.9290 -1.7066 22 6 0.7352 -10.8190 -0.4422 23 6 0.7216 -11.9470 0.3758 24 9 0.2366 -13.1160 -0.0968 25 6 1.2027 -11.8731 1.6685 26 6 1.6987 -10.6764 2.1529 27 6 1.7144 -9.5576 1.3438 28 6 1.2357 -9.6256 0.0452 29 6 1.1979 -4.7837 0.6105 30 1 -0.4850 0.8402 -0.0004 31 1 0.3554 -2.3880 -0.0002 32 1 1.4530 -3.9080 -2.0921 33 1 3.2246 -3.7389 -1.8542 34 1 3.4264 -5.9436 -0.9061 35 1 2.1760 -6.2133 -2.1585 36 1 0.5146 -7.7532 -2.7262 37 1 -0.7027 -8.4962 -1.6562 38 1 -0.0125 -10.0171 -3.5441 39 1 1.6515 -9.9949 -2.9062 40 1 1.1907 -12.7486 2.3007 41 1 2.0747 -10.6171 3.1636 42 1 2.1020 -8.6245 1.7251 43 1 0.1434 -4.5113 0.5651 44 1 1.4938 -4.9571 1.6452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969283921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:30 Heat of formation + Delta-G solvation = -93.556924 kcal Electronic energy + Delta-G solvation = -28699.449763 eV Core-core repulsion = 24530.904702 eV Total energy + Delta-G solvation = -4168.545061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.85762 -42.19444 -40.69465 -38.80071 -38.47842 -35.95393 -35.27166 -33.25802 -31.85604 -31.03795 -30.90966 -29.59677 -27.48331 -25.57099 -25.07163 -24.23675 -23.53565 -21.85449 -21.38454 -20.27197 -19.36167 -19.03897 -18.46428 -18.40833 -17.64487 -17.25003 -16.98422 -16.54148 -16.39877 -16.03159 -15.88734 -15.59691 -15.50225 -15.28103 -14.92588 -14.73698 -14.39215 -14.01059 -13.97571 -13.85257 -13.51754 -13.22784 -13.16746 -13.09339 -12.97408 -12.76718 -12.67195 -12.34932 -12.20706 -12.07951 -11.92808 -11.78797 -11.72695 -11.67968 -10.95928 -10.90621 -9.81216 -9.71745 -9.26998 -9.04758 -7.95305 -5.25502 0.01737 0.17231 1.44451 1.49448 1.50306 1.60039 1.81696 2.14707 2.49795 2.57332 3.09368 3.21865 3.37454 3.49005 3.59147 3.69344 3.75585 3.85932 3.94433 4.00457 4.08877 4.13591 4.25922 4.28930 4.36495 4.38667 4.41729 4.52563 4.54435 4.64562 4.76016 4.83337 4.87100 4.94426 5.00623 5.02208 5.18062 5.18641 5.27107 5.36116 5.45372 5.54585 5.64045 6.24774 6.25394 6.47610 7.03876 7.31774 8.04061 8.26830 9.28444 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.002360 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.127835 B =11859.519553 C =12295.130285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.299 1.299 7 C -0.236 4.236 8 H 0.086 0.914 9 N -0.732 5.732 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.145 4.145 13 C 0.101 3.899 14 N -0.609 5.609 15 C 0.533 3.467 16 O -0.579 6.579 17 C -0.052 4.052 18 H 0.140 0.860 19 C -0.149 4.149 20 C 0.062 3.938 21 O -0.328 6.328 22 C 0.097 3.903 23 C 0.042 3.958 24 F -0.143 7.143 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.084 4.084 28 C -0.130 4.130 29 C 0.108 3.892 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.125 0.875 43 H 0.040 0.960 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.793 -24.551 -4.426 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.226 1.226 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.093 0.907 12 C -0.186 4.186 13 C -0.021 4.021 14 N -0.342 5.342 15 C 0.322 3.678 16 O -0.458 6.458 17 C -0.073 4.073 18 H 0.158 0.842 19 C -0.187 4.187 20 C -0.012 4.012 21 O -0.243 6.243 22 C 0.051 3.949 23 C 0.022 3.978 24 F -0.122 7.122 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.103 4.103 28 C -0.131 4.131 29 C -0.016 4.016 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.113 0.887 40 H 0.185 0.815 41 H 0.180 0.820 42 H 0.143 0.857 43 H 0.059 0.941 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.331 -24.735 -4.072 26.416 hybrid contribution -0.693 1.419 0.193 1.591 sum 7.638 -23.316 -3.879 24.840 Atomic orbital electron populations 1.69845 1.06841 1.25986 1.59614 1.25602 0.96291 1.01293 1.03798 0.85070 0.78522 0.79778 0.76352 1.18409 1.22311 1.22607 1.19686 0.91694 0.84637 1.40721 0.89653 1.42583 1.05357 1.00844 1.88330 1.21416 0.94185 0.83862 0.95001 0.90738 1.23406 1.02694 0.94096 0.98388 1.22700 0.92708 0.95745 0.90909 1.48553 1.43491 1.08791 1.33362 1.20423 0.80762 0.83183 0.83400 1.90720 1.32844 1.84864 1.37403 1.20202 1.03797 0.88520 0.94785 0.84237 1.22248 0.98986 1.00656 0.96799 1.23357 1.03809 0.83551 0.90450 1.86023 1.70113 1.50470 1.17676 1.18694 0.97642 0.92533 0.86028 1.17448 1.05748 0.80219 0.94373 1.91456 1.86292 1.45438 1.88999 1.21305 0.98364 1.00900 0.92627 1.21188 1.00319 0.91041 1.01336 1.21133 0.97415 0.99344 0.92387 1.19297 1.04518 0.92632 0.96665 1.22047 0.99459 0.85045 0.95048 0.94132 0.79727 0.92526 0.89021 0.88238 0.87746 0.86099 0.92150 0.84308 0.88712 0.81501 0.82011 0.85701 0.94128 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 7 C -0.24 -12.27 9.96 84.03 0.84 -11.43 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -34.81 5.22 -317.33 -1.66 -36.47 16 10 C 0.17 5.77 3.61 46.18 0.17 5.94 16 11 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 12 C -0.15 -3.93 6.78 32.06 0.22 -3.71 16 13 C 0.10 1.87 6.17 86.93 0.54 2.41 16 14 N -0.61 -16.05 3.32 -811.34 -2.70 -18.74 16 15 C 0.53 14.74 5.79 87.66 0.51 15.25 16 16 O -0.58 -21.60 16.18 -3.04 -0.05 -21.65 16 17 C -0.05 -1.01 2.16 -12.24 -0.03 -1.03 16 18 H 0.14 1.72 7.09 -2.39 -0.02 1.70 16 19 C -0.15 -2.44 5.49 30.75 0.17 -2.27 16 20 C 0.06 0.83 7.03 72.12 0.51 1.33 16 21 O -0.33 -7.37 10.09 -92.41 -0.93 -8.30 16 22 C 0.10 2.32 6.48 22.55 0.15 2.47 16 23 C 0.04 0.98 7.30 22.51 0.16 1.14 16 24 F -0.14 -3.59 17.05 44.97 0.77 -2.83 16 25 C -0.11 -2.05 10.02 22.26 0.22 -1.83 16 26 C -0.12 -2.14 10.04 22.25 0.22 -1.91 16 27 C -0.08 -1.83 8.58 22.31 0.19 -1.64 16 28 C -0.13 -2.93 5.12 -19.75 -0.10 -3.03 16 29 C 0.11 3.64 6.62 86.73 0.57 4.22 16 30 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 31 H 0.37 19.69 7.56 -92.71 -0.70 18.99 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.28 7.41 -2.39 -0.02 1.26 16 36 H 0.12 1.33 7.90 -2.39 -0.02 1.31 16 37 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 38 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.13 2.73 7.33 -2.91 -0.02 2.71 16 43 H 0.04 1.62 7.72 -2.39 -0.02 1.60 16 44 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -74.25 364.75 2.87 -71.38 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.33 Total: 26.41 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.80 Total: 2.06 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -4.07 Total: -113.56 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.98 Total: -29.96 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.25 2.87 -71.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969283921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.176 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds