Wall clock time and date at job start Tue Mar 31 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48503 * 109.47038 * 240.00120 * 3 2 1 5 5 H 1.48496 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46760 * 120.00133 * 3 2 1 7 7 C 1.38814 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99716 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99496 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.89281 * 37.42819 * 10 9 7 12 12 C 1.55158 * 111.00235 * 273.54283 * 10 9 7 13 13 C 1.54323 * 102.94097 * 206.42733 * 12 10 9 14 14 N 1.47025 * 107.27444 * 22.19320 * 13 12 10 15 15 C 1.34776 * 125.64808 * 181.01344 * 14 13 12 16 16 O 1.21286 * 119.99790 * 174.78519 * 15 14 13 17 17 C 1.50699 * 120.00406 * 354.78537 * 15 14 13 18 18 H 1.09000 * 109.69565 * 33.72780 * 17 15 14 19 19 C 1.53405 * 109.70142 * 154.29137 * 17 15 14 20 20 O 1.42820 * 108.38147 * 184.43674 * 19 17 15 21 21 C 1.35903 * 117.87728 * 310.90991 * 20 19 17 22 22 C 1.39124 * 118.47491 * 196.99844 * 21 20 19 23 23 C 1.37974 * 120.25340 * 180.18018 * 22 21 20 24 24 C 1.38471 * 119.93197 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.03847 * 179.88999 * 24 23 22 26 26 C 1.38294 * 119.92810 * 359.91668 * 24 23 22 27 27 C 1.38356 * 121.79245 * 17.04020 * 21 20 19 28 28 C 1.50773 * 121.41250 * 359.66408 * 27 21 20 29 29 C 1.47424 * 108.69940 * 1.05917 * 14 13 12 30 30 H 0.96998 * 119.99934 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00333 * 0.02562 * 9 7 2 32 32 H 1.09000 * 110.71490 * 88.06833 * 12 10 9 33 33 H 1.08997 * 110.87314 * 324.85883 * 12 10 9 34 34 H 1.09002 * 109.88295 * 141.61616 * 13 12 10 35 35 H 1.09008 * 109.88442 * 262.77670 * 13 12 10 36 36 H 1.08998 * 109.68587 * 304.15618 * 19 17 15 37 37 H 1.08998 * 109.67944 * 64.68071 * 19 17 15 38 38 H 1.08001 * 119.87173 * 0.19039 * 22 21 20 39 39 H 1.08002 * 120.03310 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.85057 * 180.02562 * 26 24 23 41 41 H 1.09008 * 109.43411 * 257.73370 * 28 27 21 42 42 H 1.09001 * 109.44013 * 137.86154 * 28 27 21 43 43 H 1.08999 * 110.36740 * 217.02881 * 29 14 13 44 44 H 1.09006 * 110.45683 * 94.75838 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9529 -3.5889 0.6183 12 6 2.4139 -4.0935 -1.4463 13 6 2.5174 -5.6287 -1.3279 14 7 1.7450 -6.0283 -0.1424 15 6 1.6040 -7.2881 0.3153 16 8 1.0204 -7.4924 1.3587 17 6 2.1715 -8.4428 -0.4693 18 1 3.0899 -8.1324 -0.9675 19 6 2.4664 -9.6148 0.4757 20 8 3.0973 -10.6520 -0.2766 21 6 2.5211 -11.0273 -1.4489 22 6 2.8920 -12.2449 -2.0104 23 6 2.3330 -12.6602 -3.2015 24 6 1.3994 -11.8627 -3.8417 25 9 0.8522 -12.2662 -5.0091 26 6 1.0281 -10.6524 -3.2850 27 6 1.5856 -10.2333 -2.0882 28 6 1.1513 -8.9102 -1.5103 29 6 1.1493 -4.8227 0.4620 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.3676 -3.6653 -1.7548 33 1 1.6234 -3.8129 -2.1423 34 1 2.0994 -6.0983 -2.2183 35 1 3.5604 -5.9217 -1.2067 36 1 3.1308 -9.2844 1.2741 37 1 1.5347 -9.9852 0.9030 38 1 3.6203 -12.8675 -1.5120 39 1 2.6238 -13.6059 -3.6344 40 1 0.2995 -10.0316 -3.7852 41 1 0.1760 -9.0239 -1.0369 42 1 1.0825 -8.1709 -2.3083 43 1 1.1558 -4.9006 1.5491 44 1 0.1318 -4.6776 0.0989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969323662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:08 Heat of formation + Delta-G solvation = -78.846716 kcal Electronic energy + Delta-G solvation = -28110.048425 eV Core-core repulsion = 23942.141246 eV Total energy + Delta-G solvation = -4167.907178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.13413 -41.32433 -39.81783 -37.80530 -37.33129 -34.73272 -34.16525 -31.72506 -31.08167 -30.30189 -29.64719 -27.95767 -26.20786 -25.01155 -23.54752 -23.19947 -22.81913 -20.94257 -20.16782 -19.06941 -18.35512 -17.78031 -17.40300 -17.35675 -16.86943 -16.18767 -15.92913 -15.54321 -15.36068 -14.90264 -14.56508 -14.47806 -14.45096 -13.95777 -13.71591 -13.62090 -13.36162 -13.33999 -13.26362 -13.11759 -12.74722 -12.45610 -12.09697 -11.75445 -11.66997 -11.51224 -11.24079 -11.13697 -11.01742 -10.88509 -10.75720 -10.40600 -10.15403 -9.87806 -9.78240 -9.37990 -9.01959 -8.57824 -8.44273 -7.11975 -5.88098 -3.19240 0.71687 0.81535 2.45735 2.73409 2.98841 3.18456 3.37559 3.42553 3.43418 3.86139 4.08255 4.20141 4.22541 4.41917 4.46887 4.49185 4.66128 4.77626 4.92909 4.93364 5.10043 5.13092 5.17418 5.21861 5.25099 5.39680 5.46047 5.48156 5.52770 5.58850 5.65109 5.71421 5.75867 5.86022 5.89266 6.05896 6.11316 6.26373 6.30894 6.42159 6.51365 6.81980 6.98849 7.52960 7.59170 8.06154 8.29105 9.40783 9.93847 10.28656 11.33910 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.002179 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.096939 B =12849.726861 C =13447.621288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.155 4.155 13 C 0.099 3.901 14 N -0.608 5.608 15 C 0.537 3.463 16 O -0.542 6.542 17 C -0.143 4.143 18 H 0.107 0.893 19 C 0.081 3.919 20 O -0.308 6.308 21 C 0.124 3.876 22 C -0.119 4.119 23 C -0.121 4.121 24 C 0.065 3.935 25 F -0.141 7.141 26 C -0.115 4.115 27 C -0.127 4.127 28 C -0.067 4.067 29 C 0.098 3.902 30 H 0.258 0.742 31 H 0.386 0.614 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -24.848 -6.168 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.341 5.341 15 C 0.324 3.676 16 O -0.419 6.419 17 C -0.165 4.165 18 H 0.125 0.875 19 C 0.006 3.994 20 O -0.222 6.222 21 C 0.079 3.921 22 C -0.138 4.138 23 C -0.139 4.139 24 C 0.046 3.954 25 F -0.120 7.120 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.104 4.104 29 C -0.025 4.025 30 H 0.068 0.932 31 H 0.221 0.779 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.440 -24.924 -5.513 26.100 hybrid contribution -0.094 1.110 -0.485 1.215 sum 5.346 -23.815 -5.998 25.133 Atomic orbital electron populations 1.69650 1.05166 1.26089 1.56821 1.24781 0.95541 0.97854 1.02396 0.86238 0.78537 0.83280 0.77916 1.21144 1.21624 1.21139 1.19149 0.91017 0.83743 1.43830 0.91016 1.42241 1.05811 0.99298 1.88151 1.21287 0.94205 0.85651 0.92838 0.91849 1.23428 1.03019 0.91023 1.02147 1.22176 0.95218 0.97846 0.87229 1.48451 1.50540 1.06088 1.29017 1.19685 0.80168 0.82437 0.85288 1.90728 1.43538 1.84233 1.23423 1.21937 1.01337 0.95168 0.98037 0.87473 1.22851 1.00025 0.84590 0.91943 1.86056 1.50843 1.54051 1.31217 1.18739 0.93617 0.93005 0.86768 1.20441 1.02670 0.94360 0.96308 1.20930 0.96946 1.00521 0.95542 1.17475 0.98076 0.95342 0.84501 1.91500 1.84515 1.90590 1.45352 1.20873 1.01181 0.95675 0.95686 1.19564 0.99852 0.97175 0.96171 1.20406 0.98679 0.93440 0.97878 1.22579 0.97604 0.83388 0.98936 0.93246 0.77920 0.90608 0.90436 0.91922 0.91693 0.86558 0.90119 0.84019 0.84072 0.84278 0.89074 0.88835 0.90340 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.71 -16.76 5.28 -51.35 -0.27 -17.03 16 10 C 0.17 3.14 3.69 -65.78 -0.24 2.89 16 11 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 12 C -0.15 -2.34 6.65 -24.90 -0.17 -2.50 16 13 C 0.10 1.16 6.12 -3.06 -0.02 1.14 16 14 N -0.61 -8.39 3.33 -170.51 -0.57 -8.96 16 15 C 0.54 7.23 6.93 -10.99 -0.08 7.16 16 16 O -0.54 -9.11 16.46 5.55 0.09 -9.02 16 17 C -0.14 -1.43 2.32 -91.53 -0.21 -1.64 16 18 H 0.11 0.97 7.23 -51.93 -0.38 0.59 16 19 C 0.08 0.79 5.78 37.37 0.22 1.01 16 20 O -0.31 -3.09 10.27 -19.43 -0.20 -3.29 16 21 C 0.12 1.19 6.47 -39.21 -0.25 0.93 16 22 C -0.12 -0.96 9.93 -39.35 -0.39 -1.35 16 23 C -0.12 -0.93 10.02 -39.59 -0.40 -1.32 16 24 C 0.07 0.59 7.30 -39.47 -0.29 0.30 16 25 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 26 C -0.12 -1.01 9.64 -39.46 -0.38 -1.39 16 27 C -0.13 -1.17 5.75 -104.44 -0.60 -1.77 16 28 C -0.07 -0.61 5.17 -27.81 -0.14 -0.75 16 29 C 0.10 1.61 6.56 -2.53 -0.02 1.60 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.39 9.70 7.71 -40.82 -0.31 9.38 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.63 7.80 -51.93 -0.41 0.22 16 35 H 0.06 0.66 7.93 -51.92 -0.41 0.25 16 36 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.09 0.87 8.09 -51.92 -0.42 0.45 16 42 H 0.09 0.76 7.80 -51.93 -0.41 0.35 16 43 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 44 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -30.60 367.81 -8.96 -39.57 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.08 Total: 7.02 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.22 Total: -2.65 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.11 Total: -52.34 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.11 Total: -12.32 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.60 -8.96 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969323662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.278 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds