Wall clock time and date at job start Tue Mar 31 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48503 * 109.47038 * 240.00120 * 3 2 1 5 5 H 1.48496 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46760 * 120.00133 * 3 2 1 7 7 C 1.38814 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99716 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99496 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.89281 * 37.42819 * 10 9 7 12 12 C 1.55158 * 111.00235 * 273.54283 * 10 9 7 13 13 C 1.54323 * 102.94097 * 206.42733 * 12 10 9 14 14 N 1.47025 * 107.27444 * 22.19320 * 13 12 10 15 15 C 1.34776 * 125.64808 * 181.01344 * 14 13 12 16 16 O 1.21286 * 119.99790 * 174.78519 * 15 14 13 17 17 C 1.50699 * 120.00406 * 354.78537 * 15 14 13 18 18 H 1.09000 * 109.69565 * 33.72780 * 17 15 14 19 19 C 1.53405 * 109.70142 * 154.29137 * 17 15 14 20 20 O 1.42820 * 108.38147 * 184.43674 * 19 17 15 21 21 C 1.35903 * 117.87728 * 310.90991 * 20 19 17 22 22 C 1.39124 * 118.47491 * 196.99844 * 21 20 19 23 23 C 1.37974 * 120.25340 * 180.18018 * 22 21 20 24 24 C 1.38471 * 119.93197 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.03847 * 179.88999 * 24 23 22 26 26 C 1.38294 * 119.92810 * 359.91668 * 24 23 22 27 27 C 1.38356 * 121.79245 * 17.04020 * 21 20 19 28 28 C 1.50773 * 121.41250 * 359.66408 * 27 21 20 29 29 C 1.47424 * 108.69940 * 1.05917 * 14 13 12 30 30 H 0.96998 * 119.99934 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00333 * 0.02562 * 9 7 2 32 32 H 1.09000 * 110.71490 * 88.06833 * 12 10 9 33 33 H 1.08997 * 110.87314 * 324.85883 * 12 10 9 34 34 H 1.09002 * 109.88295 * 141.61616 * 13 12 10 35 35 H 1.09008 * 109.88442 * 262.77670 * 13 12 10 36 36 H 1.08998 * 109.68587 * 304.15618 * 19 17 15 37 37 H 1.08998 * 109.67944 * 64.68071 * 19 17 15 38 38 H 1.08001 * 119.87173 * 0.19039 * 22 21 20 39 39 H 1.08002 * 120.03310 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.85057 * 180.02562 * 26 24 23 41 41 H 1.09008 * 109.43411 * 257.73370 * 28 27 21 42 42 H 1.09001 * 109.44013 * 137.86154 * 28 27 21 43 43 H 1.08999 * 110.36740 * 217.02881 * 29 14 13 44 44 H 1.09006 * 110.45683 * 94.75838 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9529 -3.5889 0.6183 12 6 2.4139 -4.0935 -1.4463 13 6 2.5174 -5.6287 -1.3279 14 7 1.7450 -6.0283 -0.1424 15 6 1.6040 -7.2881 0.3153 16 8 1.0204 -7.4924 1.3587 17 6 2.1715 -8.4428 -0.4693 18 1 3.0899 -8.1324 -0.9675 19 6 2.4664 -9.6148 0.4757 20 8 3.0973 -10.6520 -0.2766 21 6 2.5211 -11.0273 -1.4489 22 6 2.8920 -12.2449 -2.0104 23 6 2.3330 -12.6602 -3.2015 24 6 1.3994 -11.8627 -3.8417 25 9 0.8522 -12.2662 -5.0091 26 6 1.0281 -10.6524 -3.2850 27 6 1.5856 -10.2333 -2.0882 28 6 1.1513 -8.9102 -1.5103 29 6 1.1493 -4.8227 0.4620 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.3676 -3.6653 -1.7548 33 1 1.6234 -3.8129 -2.1423 34 1 2.0994 -6.0983 -2.2183 35 1 3.5604 -5.9217 -1.2067 36 1 3.1308 -9.2844 1.2741 37 1 1.5347 -9.9852 0.9030 38 1 3.6203 -12.8675 -1.5120 39 1 2.6238 -13.6059 -3.6344 40 1 0.2995 -10.0316 -3.7852 41 1 0.1760 -9.0239 -1.0369 42 1 1.0825 -8.1709 -2.3083 43 1 1.1558 -4.9006 1.5491 44 1 0.1318 -4.6776 0.0989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969323662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:08 Heat of formation + Delta-G solvation = -96.899755 kcal Electronic energy + Delta-G solvation = -28110.831263 eV Core-core repulsion = 23942.141246 eV Total energy + Delta-G solvation = -4168.690017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.83636 -42.12310 -40.86457 -38.86594 -38.24002 -35.98565 -35.43589 -33.31980 -31.95758 -31.04898 -30.92673 -29.39481 -26.90837 -26.23494 -25.10971 -23.99785 -23.79651 -21.85061 -21.52057 -20.06734 -19.29115 -19.11241 -18.57091 -18.10817 -17.77621 -17.41787 -16.79908 -16.53221 -16.25321 -16.15753 -15.70404 -15.53040 -15.33208 -15.15448 -14.84962 -14.59244 -14.47187 -14.33583 -14.12448 -13.99195 -13.92743 -13.50843 -13.39549 -13.13465 -13.00898 -12.65734 -12.42367 -12.35603 -12.21184 -12.15363 -11.87474 -11.76844 -11.71974 -11.62113 -10.95903 -10.93491 -10.00284 -9.74061 -9.12940 -9.05346 -7.95381 -5.25490 0.09262 0.15314 1.39742 1.49403 1.51822 1.57695 1.74231 2.18488 2.51448 2.57070 3.13270 3.29721 3.37538 3.43305 3.52197 3.67647 3.68983 3.74311 3.91279 4.00500 4.06362 4.10129 4.25855 4.30217 4.31310 4.40381 4.46593 4.49539 4.52504 4.66828 4.76558 4.78198 4.83273 4.92184 4.98836 5.08359 5.14076 5.15397 5.22955 5.24198 5.42184 5.53635 5.67134 6.25306 6.29038 6.43493 6.96527 7.32315 8.03912 8.27432 9.27628 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.002179 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.096939 B =12849.726861 C =13447.621288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.729 5.729 10 C 0.164 3.836 11 H 0.060 0.940 12 C -0.145 4.145 13 C 0.104 3.896 14 N -0.607 5.607 15 C 0.539 3.461 16 O -0.579 6.579 17 C -0.130 4.130 18 H 0.126 0.874 19 C 0.082 3.918 20 O -0.311 6.311 21 C 0.107 3.893 22 C -0.119 4.119 23 C -0.115 4.115 24 C 0.051 3.949 25 F -0.148 7.148 26 C -0.119 4.119 27 C -0.131 4.131 28 C -0.064 4.064 29 C 0.108 3.892 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -26.461 -7.469 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.054 3.946 11 H 0.078 0.922 12 C -0.185 4.185 13 C -0.018 4.018 14 N -0.340 5.340 15 C 0.328 3.672 16 O -0.459 6.459 17 C -0.152 4.152 18 H 0.144 0.856 19 C 0.007 3.993 20 O -0.225 6.225 21 C 0.062 3.938 22 C -0.137 4.137 23 C -0.133 4.133 24 C 0.032 3.968 25 F -0.127 7.127 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.101 4.101 29 C -0.016 4.016 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.167 0.833 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.518 -26.590 -6.840 28.467 hybrid contribution -0.704 1.482 -0.066 1.642 sum 6.814 -25.108 -6.907 26.917 Atomic orbital electron populations 1.69810 1.06664 1.26197 1.59264 1.25570 0.96325 1.01142 1.03605 0.85224 0.77166 0.79176 0.78251 1.20065 1.22561 1.20535 1.19548 0.91550 0.84732 1.41315 0.90139 1.42396 1.05443 1.00556 1.88510 1.21451 0.93796 0.84184 0.95118 0.92154 1.23208 1.02833 0.93594 0.98894 1.22284 0.96807 0.95297 0.87363 1.48481 1.50607 1.05465 1.29444 1.20268 0.79300 0.82761 0.84887 1.90716 1.45204 1.84716 1.25308 1.21879 1.02006 0.93490 0.97785 0.85570 1.22816 0.99889 0.84563 0.92075 1.86059 1.50932 1.54006 1.31501 1.19007 0.94207 0.93793 0.86799 1.20689 1.02723 0.93998 0.96281 1.21192 0.95960 1.01078 0.95108 1.17704 0.98713 0.95859 0.84543 1.91483 1.84731 1.90680 1.45810 1.20998 1.01299 0.95875 0.95597 1.19539 1.00130 0.97188 0.96359 1.20390 0.97914 0.93941 0.97858 1.22235 0.97010 0.84283 0.98110 0.94022 0.79359 0.89774 0.91746 0.89033 0.88848 0.85969 0.91025 0.82199 0.81805 0.83269 0.89911 0.87460 0.91934 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 44.55 29.55 68.60 2.03 46.58 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.24 -12.59 9.98 84.03 0.84 -11.75 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -34.66 5.28 -316.37 -1.67 -36.33 16 10 C 0.16 5.92 3.69 46.38 0.17 6.09 16 11 H 0.06 2.21 8.13 -2.39 -0.02 2.20 16 12 C -0.14 -4.08 6.65 31.78 0.21 -3.87 16 13 C 0.10 2.12 6.12 86.73 0.53 2.65 16 14 N -0.61 -15.77 3.33 -811.76 -2.70 -18.47 16 15 C 0.54 13.77 6.93 87.66 0.61 14.38 16 16 O -0.58 -19.43 16.46 -3.05 -0.05 -19.48 16 17 C -0.13 -2.31 2.32 -11.38 -0.03 -2.33 16 18 H 0.13 1.79 7.23 -2.39 -0.02 1.77 16 19 C 0.08 1.48 5.78 72.12 0.42 1.89 16 20 O -0.31 -5.62 10.27 -92.45 -0.95 -6.57 16 21 C 0.11 1.82 6.47 22.51 0.15 1.96 16 22 C -0.12 -1.60 9.93 22.42 0.22 -1.38 16 23 C -0.11 -1.48 10.02 22.26 0.22 -1.25 16 24 C 0.05 0.83 7.30 22.34 0.16 0.99 16 25 F -0.15 -2.70 17.27 44.97 0.78 -1.93 16 26 C -0.12 -1.86 9.64 22.35 0.22 -1.65 16 27 C -0.13 -2.15 5.75 -19.75 -0.11 -2.26 16 28 C -0.06 -1.02 5.17 29.89 0.15 -0.87 16 29 C 0.11 3.56 6.56 86.86 0.57 4.13 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 31 H 0.37 19.38 7.71 -92.71 -0.71 18.67 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.42 7.80 -2.39 -0.02 1.40 16 35 H 0.09 1.46 7.93 -2.38 -0.02 1.44 16 36 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.41 8.04 -2.39 -0.02 1.40 16 38 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.08 1.48 8.09 -2.38 -0.02 1.46 16 42 H 0.11 1.41 7.80 -2.39 -0.02 1.39 16 43 H 0.06 2.25 7.99 -2.39 -0.02 2.23 16 44 H 0.06 2.13 8.00 -2.38 -0.02 2.11 16 Total: -1.00 -66.88 367.81 2.83 -64.05 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.31 Total: 26.55 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 4.80 Total: 3.10 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.09 Total: -112.31 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.00 Total: -26.04 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.88 2.83 -64.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969323662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.848 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds