Wall clock time and date at job start Tue Mar 31 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00492 * 2 1 4 4 H 1.48504 * 109.47082 * 270.00252 * 3 2 1 5 5 H 1.48496 * 109.46943 * 29.99871 * 3 2 1 6 6 H 1.48493 * 109.47082 * 150.00269 * 3 2 1 7 7 C 1.38814 * 119.99329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99794 * 196.98590 * 7 2 1 9 9 N 1.36929 * 120.00651 * 16.97958 * 7 2 1 10 10 C 1.43460 * 118.94495 * 204.99160 * 9 7 2 11 11 C 1.53793 * 107.96065 * 273.63367 * 10 9 7 12 12 C 1.47606 * 111.84303 * 281.53959 * 11 10 9 13 13 N 1.48221 * 110.03914 * 58.43443 * 12 11 10 14 14 C 1.34774 * 119.96797 * 102.55066 * 13 12 11 15 15 O 1.21282 * 119.99547 * 184.31709 * 14 13 12 16 16 C 1.50702 * 120.00187 * 4.31657 * 14 13 12 17 17 H 1.08995 * 110.81062 * 305.52383 * 16 14 13 18 18 C 1.54700 * 110.74923 * 68.84114 * 16 14 13 19 19 C 1.51649 * 101.93327 * 143.61722 * 18 16 14 20 20 C 1.37754 * 132.14739 * 164.56917 * 19 18 16 21 21 C 1.38533 * 119.95985 * 180.37153 * 20 19 18 22 22 F 1.35099 * 120.13770 * 179.97438 * 21 20 19 23 23 C 1.38469 * 119.71474 * 0.02562 * 21 20 19 24 24 C 1.37926 * 120.32686 * 359.82250 * 23 21 20 25 25 C 1.38861 * 107.04598 * 344.61459 * 19 18 16 26 26 O 1.36195 * 111.22574 * 358.92043 * 25 19 18 27 27 C 1.43619 * 120.05839 * 282.27425 * 13 12 11 28 28 C 1.48857 * 118.93611 * 25.01239 * 9 7 2 29 29 H 0.97004 * 119.99471 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.76641 * 33.24917 * 10 9 7 31 31 H 1.09003 * 109.76759 * 153.96629 * 10 9 7 32 32 H 1.09001 * 109.00944 * 42.26870 * 11 10 9 33 33 H 1.09005 * 109.01015 * 161.13553 * 11 10 9 34 34 H 1.09002 * 109.45101 * 298.28074 * 12 11 10 35 35 H 1.09000 * 109.50923 * 178.62619 * 12 11 10 36 36 H 1.09007 * 110.93917 * 25.46291 * 18 16 14 37 37 H 1.08998 * 110.94185 * 261.77902 * 18 16 14 38 38 H 1.08002 * 120.01558 * 0.35096 * 20 19 18 39 39 H 1.08005 * 119.83559 * 179.84394 * 23 21 20 40 40 H 1.07998 * 119.87046 * 179.97438 * 24 23 21 41 41 H 1.08993 * 108.87604 * 211.69650 * 27 13 12 42 42 H 1.09002 * 108.87732 * 330.13756 * 27 13 12 43 43 H 1.09003 * 109.48436 * 20.63797 * 28 9 7 44 44 H 1.09006 * 109.48246 * 260.60364 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2229 0.2727 9 7 1.3703 -2.3621 -0.3473 10 6 1.8756 -3.6093 0.1500 11 6 2.9675 -4.0978 -0.8166 12 6 2.3925 -4.7097 -2.0306 13 7 1.5242 -3.7327 -2.7294 14 6 1.9737 -3.1002 -3.8314 15 8 1.2952 -2.2440 -4.3583 16 6 3.3192 -3.4567 -4.4090 17 1 4.0996 -3.3734 -3.6527 18 6 3.2950 -4.8789 -5.0172 19 6 4.1936 -4.7174 -6.2281 20 6 4.8179 -5.6344 -7.0448 21 6 5.6046 -5.1993 -8.0988 22 9 6.2189 -6.0955 -8.9018 23 6 5.7594 -3.8420 -8.3251 24 6 5.1319 -2.9239 -7.5093 25 6 4.3362 -3.3541 -6.4502 26 8 3.6209 -2.6297 -5.5455 27 6 0.2023 -3.4638 -2.2367 28 6 0.1729 -2.2883 -1.2287 29 1 -0.4849 0.8401 0.0004 30 1 2.3004 -3.4650 1.1433 31 1 1.0693 -4.3413 0.1968 32 1 3.5911 -3.2515 -1.1049 33 1 3.5862 -4.8377 -0.3087 34 1 1.8020 -5.5826 -1.7523 35 1 3.1968 -5.0195 -2.6980 36 1 2.2846 -5.1575 -5.3165 37 1 3.7081 -5.6079 -4.3200 38 1 4.6943 -6.6918 -6.8633 39 1 6.3744 -3.5006 -9.1448 40 1 5.2580 -1.8671 -7.6922 41 1 -0.4456 -3.2220 -3.0792 42 1 -0.1800 -4.3588 -1.7459 43 1 0.1791 -1.3433 -1.7720 44 1 -0.7300 -2.3527 -0.6214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982060618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:18 Heat of formation + Delta-G solvation = -39.138062 kcal Electronic energy + Delta-G solvation = -29552.659160 eV Core-core repulsion = 25386.473878 eV Total energy + Delta-G solvation = -4166.185282 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.07340 -41.59850 -39.57891 -37.51126 -36.77508 -34.53921 -33.08102 -32.38985 -31.14652 -30.01961 -29.76063 -27.61050 -25.54395 -24.86135 -23.52440 -22.73438 -22.13730 -21.86922 -19.84666 -18.93838 -17.96167 -17.47992 -17.33182 -17.03616 -16.69490 -15.85692 -15.79121 -15.51902 -14.96239 -14.50187 -14.38983 -14.25427 -13.87734 -13.69252 -13.62980 -13.40547 -13.21745 -13.10716 -12.90806 -12.70322 -12.53424 -12.37809 -12.05226 -11.64280 -11.41706 -11.17359 -10.98116 -10.94684 -10.75332 -10.61437 -10.43716 -10.18490 -9.80352 -9.74847 -9.39789 -9.35607 -8.44777 -8.27077 -8.15338 -6.70831 -5.77266 -3.19215 0.81460 0.90488 2.58033 2.94489 3.18895 3.41190 3.47569 3.49492 3.50270 3.85543 4.12785 4.27394 4.48045 4.53339 4.61570 4.75256 4.80065 4.94686 5.01117 5.18166 5.30408 5.41078 5.43040 5.46679 5.52250 5.57251 5.67962 5.76575 5.79084 5.85017 6.01806 6.06756 6.09942 6.29483 6.30703 6.32798 6.36819 6.71166 6.82361 6.90457 6.94860 7.39357 7.58015 7.74237 7.83857 8.45849 8.51057 9.21831 9.90485 10.35156 11.30892 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003267 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.365265 B = 8569.493050 C = 9331.811557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.176 4.176 12 C 0.115 3.885 13 N -0.577 5.577 14 C 0.520 3.480 15 O -0.516 6.516 16 C 0.067 3.933 17 H 0.114 0.886 18 C -0.097 4.097 19 C -0.149 4.149 20 C -0.100 4.100 21 C 0.063 3.937 22 F -0.140 7.140 23 C -0.115 4.115 24 C -0.110 4.110 25 C 0.107 3.893 26 O -0.267 6.267 27 C 0.092 3.908 28 C 0.166 3.834 29 H 0.254 0.746 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.072 -14.772 -11.527 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.035 3.965 11 C -0.218 4.218 12 C -0.007 4.007 13 N -0.311 5.311 14 C 0.304 3.696 15 O -0.390 6.390 16 C 0.008 3.992 17 H 0.131 0.869 18 C -0.134 4.134 19 C -0.150 4.150 20 C -0.118 4.118 21 C 0.043 3.957 22 F -0.118 7.118 23 C -0.133 4.133 24 C -0.129 4.129 25 C 0.060 3.940 26 O -0.180 6.180 27 C -0.033 4.033 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.479 -13.965 -11.810 20.159 hybrid contribution 0.666 0.661 0.021 0.939 sum 9.145 -13.304 -11.790 19.991 Atomic orbital electron populations 1.70023 1.05238 1.25534 1.53841 1.24962 0.95236 0.98332 1.00526 0.86363 0.79092 0.83948 0.77796 1.21348 1.21756 1.20533 1.19104 0.92750 0.85300 1.41855 0.91831 1.43677 1.32106 1.01589 1.53773 1.20226 0.93395 0.88525 0.94404 1.22060 1.01470 1.00624 0.97603 1.21034 0.93801 0.91111 0.94715 1.47241 1.16302 1.41940 1.25588 1.19668 0.86508 0.82163 0.81215 1.90745 1.57292 1.30035 1.60958 1.23268 0.98039 0.88856 0.89077 0.86863 1.21846 1.00580 0.96500 0.94494 1.20523 1.01323 0.93251 0.99865 1.20155 0.97306 1.00335 0.94049 1.17336 0.98982 0.86795 0.92556 1.91493 1.81222 1.67246 1.71885 1.20835 1.01080 0.90784 1.00633 1.20101 0.97252 1.00915 0.94604 1.19709 0.92212 0.89812 0.92249 1.87035 1.67021 1.36355 1.27541 1.22034 0.82049 1.00340 0.98835 1.21854 0.89004 0.95562 0.89494 0.93625 0.93498 0.94768 0.91384 0.92293 0.91084 0.91271 0.88148 0.87606 0.84367 0.83824 0.84071 0.91077 0.92169 0.90403 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 11.06 55.49 0.61 -25.73 16 2 C 0.01 0.24 4.88 -17.43 -0.09 0.15 16 3 Si 0.90 22.38 29.59 -169.99 -5.03 17.35 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -7.03 9.26 -15.06 -0.14 -7.17 16 8 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -13.99 2.54 -171.99 -0.44 -14.43 16 10 C 0.16 3.06 5.63 -5.24 -0.03 3.03 16 11 C -0.18 -2.63 5.65 -28.92 -0.16 -2.79 16 12 C 0.12 1.46 5.42 -5.70 -0.03 1.42 16 13 N -0.58 -9.61 2.45 -176.40 -0.43 -10.04 16 14 C 0.52 9.53 6.97 -10.99 -0.08 9.46 16 15 O -0.52 -11.92 16.17 -13.50 -0.22 -12.14 16 16 C 0.07 0.98 3.02 -26.99 -0.08 0.89 16 17 H 0.11 1.49 7.70 -51.93 -0.40 1.09 16 18 C -0.10 -1.03 5.79 -26.52 -0.15 -1.18 16 19 C -0.15 -1.67 6.27 -104.10 -0.65 -2.33 16 20 C -0.10 -0.98 10.02 -39.65 -0.40 -1.37 16 21 C 0.06 0.64 7.31 -39.39 -0.29 0.35 16 22 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 23 C -0.11 -1.08 10.00 -39.61 -0.40 -1.47 16 24 C -0.11 -1.20 10.06 -39.31 -0.40 -1.60 16 25 C 0.11 1.41 7.03 -38.97 -0.27 1.14 16 26 O -0.27 -4.42 10.39 -39.42 -0.41 -4.83 16 27 C 0.09 1.68 5.22 -4.57 -0.02 1.66 16 28 C 0.17 3.91 5.19 -1.74 -0.01 3.90 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 31 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 32 H 0.07 1.20 7.91 -51.93 -0.41 0.78 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 8.05 -51.93 -0.42 0.34 16 35 H 0.07 0.67 4.26 -51.93 -0.22 0.45 16 36 H 0.10 1.07 7.92 -51.92 -0.41 0.66 16 37 H 0.11 0.79 6.74 -51.93 -0.35 0.44 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 42 H 0.06 0.94 7.73 -51.93 -0.40 0.53 16 43 H 0.08 2.17 6.58 -51.93 -0.34 1.83 16 44 H 0.04 1.01 8.00 -51.93 -0.42 0.59 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -33.51 354.95 -9.53 -43.04 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.81 Total: -1.24 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -3.20 Total: 4.09 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.25 Total: -50.20 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.63 Total: -16.97 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.51 -9.53 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982060618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.902 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds