Wall clock time and date at job start Tue Mar 31 2020 18:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00492 * 2 1 4 4 H 1.48504 * 109.47082 * 270.00252 * 3 2 1 5 5 H 1.48496 * 109.46943 * 29.99871 * 3 2 1 6 6 H 1.48493 * 109.47082 * 150.00269 * 3 2 1 7 7 C 1.38814 * 119.99329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99794 * 196.98590 * 7 2 1 9 9 N 1.36929 * 120.00651 * 16.97958 * 7 2 1 10 10 C 1.43460 * 118.94495 * 204.99160 * 9 7 2 11 11 C 1.53793 * 107.96065 * 273.63367 * 10 9 7 12 12 C 1.47606 * 111.84303 * 281.53959 * 11 10 9 13 13 N 1.48221 * 110.03914 * 58.43443 * 12 11 10 14 14 C 1.34774 * 119.96797 * 102.55066 * 13 12 11 15 15 O 1.21282 * 119.99547 * 184.31709 * 14 13 12 16 16 C 1.50702 * 120.00187 * 4.31657 * 14 13 12 17 17 H 1.08995 * 110.81062 * 305.52383 * 16 14 13 18 18 C 1.54700 * 110.74923 * 68.84114 * 16 14 13 19 19 C 1.51649 * 101.93327 * 143.61722 * 18 16 14 20 20 C 1.37754 * 132.14739 * 164.56917 * 19 18 16 21 21 C 1.38533 * 119.95985 * 180.37153 * 20 19 18 22 22 F 1.35099 * 120.13770 * 179.97438 * 21 20 19 23 23 C 1.38469 * 119.71474 * 0.02562 * 21 20 19 24 24 C 1.37926 * 120.32686 * 359.82250 * 23 21 20 25 25 C 1.38861 * 107.04598 * 344.61459 * 19 18 16 26 26 O 1.36195 * 111.22574 * 358.92043 * 25 19 18 27 27 C 1.43619 * 120.05839 * 282.27425 * 13 12 11 28 28 C 1.48857 * 118.93611 * 25.01239 * 9 7 2 29 29 H 0.97004 * 119.99471 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.76641 * 33.24917 * 10 9 7 31 31 H 1.09003 * 109.76759 * 153.96629 * 10 9 7 32 32 H 1.09001 * 109.00944 * 42.26870 * 11 10 9 33 33 H 1.09005 * 109.01015 * 161.13553 * 11 10 9 34 34 H 1.09002 * 109.45101 * 298.28074 * 12 11 10 35 35 H 1.09000 * 109.50923 * 178.62619 * 12 11 10 36 36 H 1.09007 * 110.93917 * 25.46291 * 18 16 14 37 37 H 1.08998 * 110.94185 * 261.77902 * 18 16 14 38 38 H 1.08002 * 120.01558 * 0.35096 * 20 19 18 39 39 H 1.08005 * 119.83559 * 179.84394 * 23 21 20 40 40 H 1.07998 * 119.87046 * 179.97438 * 24 23 21 41 41 H 1.08993 * 108.87604 * 211.69650 * 27 13 12 42 42 H 1.09002 * 108.87732 * 330.13756 * 27 13 12 43 43 H 1.09003 * 109.48436 * 20.63797 * 28 9 7 44 44 H 1.09006 * 109.48246 * 260.60364 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2229 0.2727 9 7 1.3703 -2.3621 -0.3473 10 6 1.8756 -3.6093 0.1500 11 6 2.9675 -4.0978 -0.8166 12 6 2.3925 -4.7097 -2.0306 13 7 1.5242 -3.7327 -2.7294 14 6 1.9737 -3.1002 -3.8314 15 8 1.2952 -2.2440 -4.3583 16 6 3.3192 -3.4567 -4.4090 17 1 4.0996 -3.3734 -3.6527 18 6 3.2950 -4.8789 -5.0172 19 6 4.1936 -4.7174 -6.2281 20 6 4.8179 -5.6344 -7.0448 21 6 5.6046 -5.1993 -8.0988 22 9 6.2189 -6.0955 -8.9018 23 6 5.7594 -3.8420 -8.3251 24 6 5.1319 -2.9239 -7.5093 25 6 4.3362 -3.3541 -6.4502 26 8 3.6209 -2.6297 -5.5455 27 6 0.2023 -3.4638 -2.2367 28 6 0.1729 -2.2883 -1.2287 29 1 -0.4849 0.8401 0.0004 30 1 2.3004 -3.4650 1.1433 31 1 1.0693 -4.3413 0.1968 32 1 3.5911 -3.2515 -1.1049 33 1 3.5862 -4.8377 -0.3087 34 1 1.8020 -5.5826 -1.7523 35 1 3.1968 -5.0195 -2.6980 36 1 2.2846 -5.1575 -5.3165 37 1 3.7081 -5.6079 -4.3200 38 1 4.6943 -6.6918 -6.8633 39 1 6.3744 -3.5006 -9.1448 40 1 5.2580 -1.8671 -7.6922 41 1 -0.4456 -3.2220 -3.0792 42 1 -0.1800 -4.3588 -1.7459 43 1 0.1791 -1.3433 -1.7720 44 1 -0.7300 -2.3527 -0.6214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982060618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:17 Heat of formation + Delta-G solvation = -59.219530 kcal Electronic energy + Delta-G solvation = -29553.529958 eV Core-core repulsion = 25386.473878 eV Total energy + Delta-G solvation = -4167.056080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.85467 -42.60542 -40.87596 -38.71586 -38.04791 -36.19302 -34.06428 -33.92798 -32.84068 -31.05474 -30.70022 -29.14272 -27.12711 -26.08045 -25.13722 -23.68060 -23.09812 -22.96495 -21.49085 -20.25303 -19.04628 -18.58959 -18.31637 -18.21735 -18.12242 -17.25858 -17.01080 -16.56798 -16.35141 -15.76705 -15.69779 -15.55067 -15.26942 -15.03720 -14.84772 -14.46999 -14.21227 -14.14830 -14.01927 -13.94556 -13.84723 -13.56732 -13.33767 -13.14818 -12.95905 -12.86808 -12.46091 -12.28292 -12.09371 -12.06885 -11.88115 -11.75780 -11.66486 -11.40858 -10.81192 -10.52515 -10.10962 -9.60698 -9.15343 -8.67820 -7.88032 -5.30210 0.02184 0.10860 1.36430 1.37313 1.42614 1.46963 1.72115 2.29859 2.47522 2.51267 2.97355 3.21495 3.27193 3.33381 3.58659 3.71800 3.77722 3.86484 4.01952 4.07657 4.16082 4.30355 4.32984 4.39546 4.49492 4.56387 4.63026 4.66702 4.79435 4.81728 4.85353 4.96142 5.01671 5.02967 5.06930 5.22111 5.29008 5.30063 5.48638 5.56514 5.57987 5.69359 5.82523 6.00803 6.38164 6.40466 7.13458 7.16620 7.94546 8.34644 9.16814 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003267 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.365265 B = 8569.493050 C = 9331.811557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.950 3.050 4 H -0.301 1.301 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.163 4.163 12 C 0.108 3.892 13 N -0.575 5.575 14 C 0.509 3.491 15 O -0.580 6.580 16 C 0.068 3.932 17 H 0.127 0.873 18 C -0.084 4.084 19 C -0.146 4.146 20 C -0.093 4.093 21 C 0.059 3.941 22 F -0.140 7.140 23 C -0.109 4.109 24 C -0.117 4.117 25 C 0.069 3.931 26 O -0.309 6.309 27 C 0.105 3.895 28 C 0.177 3.823 29 H 0.245 0.755 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.020 0.980 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -18.772 -11.952 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.780 3.220 4 H -0.229 1.229 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.203 4.203 12 C -0.011 4.011 13 N -0.306 5.306 14 C 0.297 3.703 15 O -0.460 6.460 16 C 0.009 3.991 17 H 0.145 0.855 18 C -0.121 4.121 19 C -0.147 4.147 20 C -0.112 4.112 21 C 0.040 3.960 22 F -0.119 7.119 23 C -0.128 4.128 24 C -0.136 4.136 25 C 0.024 3.976 26 O -0.223 6.223 27 C -0.020 4.020 28 C 0.051 3.949 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.039 0.961 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.972 -18.044 -12.206 24.392 hybrid contribution -0.026 1.840 0.134 1.845 sum 10.946 -16.204 -12.071 22.981 Atomic orbital electron populations 1.70166 1.06390 1.25300 1.56169 1.25633 0.95954 1.01128 1.01978 0.85512 0.78772 0.80938 0.76815 1.22938 1.21944 1.18672 1.19417 0.92864 0.86683 1.39556 0.91721 1.43888 1.31885 1.02538 1.54341 1.20548 0.95150 0.86854 0.94957 1.21839 0.99893 1.00777 0.97813 1.21447 0.94880 0.90745 0.94075 1.47426 1.16068 1.41999 1.25157 1.20529 0.87532 0.81076 0.81195 1.90709 1.59430 1.32896 1.62959 1.23299 0.95422 0.91139 0.89284 0.85547 1.21875 1.00889 0.94473 0.94825 1.20593 1.01420 0.92404 1.00313 1.20388 0.96182 1.01489 0.93136 1.17514 0.98879 0.86994 0.92627 1.91499 1.81220 1.67238 1.71910 1.21077 1.00554 0.90464 1.00660 1.20316 0.97157 1.01745 0.94355 1.20079 0.93643 0.90881 0.92969 1.86979 1.68249 1.38244 1.28789 1.21693 0.83574 0.99560 0.97166 1.21498 0.88293 0.95342 0.89798 0.94561 0.94449 0.92502 0.94401 0.87803 0.87225 0.87423 0.88059 0.83298 0.81536 0.81376 0.83565 0.92295 0.88087 0.96098 0.96525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 11.06 21.65 0.24 -57.28 16 2 C -0.05 -3.01 4.88 84.86 0.41 -2.60 16 3 Si 0.95 47.78 29.59 68.60 2.03 49.81 16 4 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.25 -14.03 9.26 84.04 0.78 -13.26 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.60 -28.88 2.54 -698.06 -1.77 -30.65 16 10 C 0.15 5.34 5.63 87.21 0.49 5.83 16 11 C -0.16 -4.19 5.65 29.17 0.16 -4.02 16 12 C 0.11 2.19 5.42 84.36 0.46 2.65 16 13 N -0.58 -18.10 2.45 -830.38 -2.03 -20.13 16 14 C 0.51 18.68 6.97 87.66 0.61 19.29 16 15 O -0.58 -28.33 16.17 15.19 0.25 -28.08 16 16 C 0.07 1.87 3.02 30.43 0.09 1.96 16 17 H 0.13 3.06 7.70 -2.39 -0.02 3.04 16 18 C -0.08 -1.47 5.79 30.73 0.18 -1.29 16 19 C -0.15 -2.88 6.27 -19.53 -0.12 -3.00 16 20 C -0.09 -1.48 10.02 22.23 0.22 -1.26 16 21 C 0.06 1.02 7.31 22.40 0.16 1.18 16 22 F -0.14 -2.48 17.27 44.97 0.78 -1.70 16 23 C -0.11 -1.81 10.00 22.25 0.22 -1.59 16 24 C -0.12 -2.45 10.06 22.45 0.23 -2.23 16 25 C 0.07 1.78 7.03 22.67 0.16 1.94 16 26 O -0.31 -10.38 10.39 -77.56 -0.81 -11.19 16 27 C 0.11 3.81 5.22 87.56 0.46 4.26 16 28 C 0.18 8.63 5.19 86.57 0.45 9.08 16 29 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 30 H 0.04 1.38 8.02 -2.39 -0.02 1.36 16 31 H 0.06 1.75 7.59 -2.39 -0.02 1.73 16 32 H 0.04 1.22 7.91 -2.39 -0.02 1.21 16 33 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.11 1.53 8.05 -2.39 -0.02 1.51 16 35 H 0.11 1.42 4.26 -2.39 -0.01 1.40 16 36 H 0.10 1.81 7.92 -2.38 -0.02 1.79 16 37 H 0.15 1.26 6.74 -2.39 -0.02 1.24 16 38 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.06 2.28 7.44 -2.39 -0.02 2.26 16 42 H 0.10 2.83 7.73 -2.39 -0.02 2.82 16 43 H 0.02 1.23 6.58 -2.39 -0.02 1.22 16 44 H 0.02 0.88 8.00 -2.38 -0.02 0.86 16 Total: -1.00 -81.47 354.95 4.68 -76.80 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.03 Total: 5.47 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 4.96 Total: 16.96 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -3.56 Total: -108.06 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.56 Total: -39.27 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -81.47 4.68 -76.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982060618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.577 kcal (2) G-P(sol) polarization free energy of solvation -81.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds