Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99735 * 2 1 4 4 H 1.48496 * 109.47403 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47007 * 240.00042 * 3 2 1 6 6 H 1.48498 * 109.47059 * 120.00665 * 3 2 1 7 7 C 1.38811 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99758 * 216.14565 * 7 2 1 9 9 N 1.36942 * 119.99960 * 36.15399 * 7 2 1 10 10 C 1.43462 * 118.93886 * 202.86925 * 9 7 2 11 11 C 1.53799 * 107.95798 * 273.60958 * 10 9 7 12 12 C 1.47142 * 111.83935 * 281.66629 * 11 10 9 13 13 N 1.48211 * 110.34350 * 58.29502 * 12 11 10 14 14 C 1.34780 * 119.96566 * 102.47015 * 13 12 11 15 15 O 1.21633 * 120.00075 * 353.93162 * 14 13 12 16 16 C 1.47195 * 119.99469 * 173.92747 * 14 13 12 17 17 C 1.35624 * 123.19159 * 21.01632 * 16 14 13 18 18 S 1.70265 * 110.84061 * 179.97438 * 17 16 14 19 19 C 1.75591 * 92.62772 * 359.97438 * 18 17 16 20 20 C 1.34008 * 110.59890 * 359.75527 * 19 18 17 21 21 C 1.52025 * 123.45649 * 179.68744 * 20 19 18 22 22 C 1.53041 * 108.81839 * 343.35816 * 21 20 19 23 23 C 1.53154 * 109.20957 * 50.44106 * 22 21 20 24 24 C 1.51611 * 125.04543 * 180.02562 * 19 18 17 25 25 C 1.43615 * 120.06247 * 282.49410 * 13 12 11 26 26 C 1.48859 * 118.93792 * 22.59669 * 9 7 2 27 27 H 0.97001 * 119.99839 * 186.30799 * 1 2 3 28 28 H 1.09000 * 109.76698 * 33.22036 * 10 9 7 29 29 H 1.09001 * 109.76610 * 153.94238 * 10 9 7 30 30 H 1.08998 * 109.01036 * 42.27009 * 11 10 9 31 31 H 1.09001 * 109.00692 * 161.13586 * 11 10 9 32 32 H 1.09006 * 109.32627 * 178.56699 * 12 11 10 33 33 H 1.09005 * 109.32310 * 298.20414 * 12 11 10 34 34 H 1.07994 * 124.57338 * 359.97438 * 17 16 14 35 35 H 1.08997 * 109.72901 * 223.45554 * 21 20 19 36 36 H 1.08997 * 109.38919 * 103.05476 * 21 20 19 37 37 H 1.09007 * 109.51449 * 290.52132 * 22 21 20 38 38 H 1.09005 * 109.51807 * 170.36565 * 22 21 20 39 39 H 1.09006 * 109.54518 * 169.75336 * 23 22 21 40 40 H 1.09001 * 109.54244 * 49.49670 * 23 22 21 41 41 H 1.09003 * 109.59787 * 283.14864 * 24 19 18 42 42 H 1.09000 * 109.60029 * 43.61413 * 24 19 18 43 43 H 1.09005 * 108.87496 * 211.44725 * 25 13 12 44 44 H 1.09002 * 108.87532 * 329.87886 * 25 13 12 45 45 H 1.09008 * 109.48025 * 260.62370 * 26 9 7 46 46 H 1.08992 * 109.48378 * 20.66030 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 -1.2126 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 2.9343 -1.2924 0.5511 9 7 1.5233 -2.2736 -0.7007 10 6 1.9325 -3.5951 -0.3208 11 6 3.2512 -3.9103 -1.0468 12 6 3.0267 -4.2819 -2.4527 13 7 2.3264 -3.1896 -3.1689 14 6 3.0161 -2.3710 -3.9878 15 8 4.2275 -2.4571 -4.0546 16 6 2.3032 -1.3727 -4.8014 17 6 1.0573 -0.9262 -4.5051 18 16 0.5364 0.2206 -5.6507 19 6 2.0320 0.1073 -6.5638 20 6 2.8689 -0.7687 -5.9909 21 6 4.2460 -1.0974 -6.5448 22 6 4.3206 -0.6207 -7.9972 23 6 3.8545 0.8361 -8.0739 24 6 2.3451 0.8922 -7.8226 25 6 0.9137 -3.0024 -2.9907 26 6 0.5816 -2.0299 -1.8275 27 1 -0.4850 -0.8350 0.0923 28 1 2.0862 -3.6377 0.7575 29 1 1.1687 -4.3158 -0.6129 30 1 3.8953 -3.0317 -1.0104 31 1 3.7483 -4.7359 -0.5375 32 1 3.9866 -4.4713 -2.9334 33 1 2.4182 -5.1853 -2.4942 34 1 0.4744 -1.2539 -3.6571 35 1 4.4113 -2.1740 -6.5046 36 1 5.0054 -0.5865 -5.9530 37 1 3.6757 -1.2426 -8.6181 38 1 5.3488 -0.6933 -8.3519 39 1 4.0746 1.2378 -9.0631 40 1 4.3721 1.4249 -7.3166 41 1 1.8173 0.4520 -8.6686 42 1 2.0341 1.9289 -7.6939 43 1 0.4914 -2.6055 -3.9140 44 1 0.4536 -3.9682 -2.7815 45 1 -0.4410 -2.1980 -1.4895 46 1 0.6861 -1.0013 -2.1726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989616922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = 42.679147 kcal Electronic energy + Delta-G solvation = -28360.564195 eV Core-core repulsion = 24764.139950 eV Total energy + Delta-G solvation = -3596.424245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.31026 -38.49758 -36.97759 -35.21651 -34.37527 -32.80461 -31.02720 -30.71196 -28.82022 -28.01388 -25.61292 -24.25877 -23.74382 -23.12699 -22.38140 -21.04890 -19.84212 -18.81483 -18.28575 -17.27293 -17.05801 -16.29278 -15.86823 -15.22070 -14.77201 -14.72395 -14.35633 -13.92251 -13.80429 -13.67672 -13.36768 -13.32858 -13.01769 -12.85136 -12.69399 -12.56617 -12.39044 -12.07226 -11.67413 -11.53147 -11.26211 -11.11945 -10.87505 -10.77870 -10.69800 -10.65482 -10.38261 -10.33426 -10.28421 -10.28003 -10.00734 -9.54653 -9.29430 -8.37510 -8.24059 -8.22671 -7.98975 -6.98067 -6.18193 -3.19020 1.07341 1.76627 2.18640 2.24577 3.44293 3.49209 3.57127 3.69084 3.72351 4.58203 4.62131 4.80251 4.85302 4.97166 5.02912 5.08292 5.24241 5.30407 5.40749 5.47812 5.48346 5.53798 5.59510 5.65512 5.69367 5.79174 5.81922 5.84960 5.92720 5.94714 5.99381 6.06898 6.10521 6.18554 6.31547 6.32102 6.40395 6.42541 6.57225 6.70832 6.72201 6.76377 6.93303 7.16237 7.88413 8.04320 8.50908 8.64801 9.07644 9.80325 10.19216 11.09636 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.005276 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.566244 B = 5305.919595 C = 6312.522260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.011 4.011 3 Si 1.036 2.964 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.361 4.361 8 H 0.056 0.944 9 N -0.587 5.587 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.133 3.867 13 N -0.578 5.578 14 C 0.583 3.417 15 O -0.546 6.546 16 C -0.147 4.147 17 C -0.230 4.230 18 S 0.163 5.837 19 C -0.217 4.217 20 C -0.052 4.052 21 C -0.048 4.048 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.040 4.040 25 C 0.059 3.941 26 C 0.125 3.875 27 H 0.267 0.733 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.210 0.790 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.037 0.963 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -3.743 -15.588 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.215 4.215 3 Si 0.865 3.135 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.489 4.489 8 H 0.074 0.926 9 N -0.310 5.310 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.011 3.989 13 N -0.308 5.308 14 C 0.371 3.629 15 O -0.426 6.426 16 C -0.164 4.164 17 C -0.366 4.366 18 S 0.433 5.567 19 C -0.333 4.333 20 C -0.063 4.063 21 C -0.088 4.088 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.080 4.080 25 C -0.067 4.067 26 C -0.001 4.001 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.451 -1.315 -15.824 15.885 hybrid contribution 1.379 -2.452 0.770 2.917 sum 1.830 -3.767 -15.053 15.625 Atomic orbital electron populations 1.70847 1.06908 1.29853 1.46090 1.25521 0.95909 1.01040 0.98980 0.83963 0.75683 0.77182 0.76657 1.21029 1.21964 1.21851 1.19827 1.05412 0.92132 1.31557 0.92595 1.43607 1.53725 1.01785 1.31855 1.20289 0.92464 0.86809 0.96811 1.21833 1.02133 1.01525 0.95520 1.20568 0.97378 0.87712 0.93194 1.47134 1.08571 1.31458 1.43681 1.17553 0.86508 0.79934 0.78929 1.90700 1.13328 1.70241 1.68288 1.20058 0.94710 1.02983 0.98680 1.27157 1.00989 1.02227 1.06243 1.82866 1.16727 1.39803 1.17315 1.24605 0.98791 1.06039 1.03873 1.20320 0.96828 0.95774 0.93382 1.20424 0.91942 1.01993 0.94413 1.21611 1.01243 0.96155 0.96745 1.21580 0.94870 0.97322 1.01750 1.20248 0.96855 0.98481 0.92368 1.22712 0.81855 1.01417 1.00690 1.22347 0.93181 0.97927 0.86669 0.92283 0.93380 0.95064 0.90985 0.92555 0.90321 0.92093 0.77414 0.90223 0.90101 0.91873 0.91454 0.91369 0.91375 0.90610 0.90669 0.89088 0.91535 0.94523 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 12.64 55.49 0.70 -25.09 16 2 C -0.01 -0.31 4.32 -17.43 -0.08 -0.38 16 3 Si 1.04 25.76 30.04 -169.99 -5.11 20.65 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.36 -9.94 9.04 -15.06 -0.14 -10.08 16 8 H 0.06 1.61 8.03 -52.49 -0.42 1.19 16 9 N -0.59 -14.00 2.43 -171.78 -0.42 -14.42 16 10 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 11 C -0.17 -3.13 5.64 -29.13 -0.16 -3.29 16 12 C 0.13 2.26 5.66 -5.91 -0.03 2.23 16 13 N -0.58 -10.80 2.46 -177.78 -0.44 -11.23 16 14 C 0.58 11.86 7.55 -12.62 -0.10 11.76 16 15 O -0.55 -12.16 14.71 5.25 0.08 -12.09 16 16 C -0.15 -2.73 5.77 -104.56 -0.60 -3.33 16 17 C -0.23 -3.98 8.03 29.80 0.24 -3.75 16 18 S 0.16 2.36 22.99 -107.50 -2.47 -0.11 16 19 C -0.22 -3.09 6.32 -35.35 -0.22 -3.32 16 20 C -0.05 -0.85 5.94 -102.82 -0.61 -1.46 16 21 C -0.05 -0.71 4.93 -27.21 -0.13 -0.84 16 22 C -0.12 -1.30 5.90 -26.63 -0.16 -1.46 16 23 C -0.12 -1.17 5.93 -26.59 -0.16 -1.33 16 24 C -0.04 -0.43 6.26 -27.37 -0.17 -0.61 16 25 C 0.06 1.03 4.71 -4.40 -0.02 1.01 16 26 C 0.13 2.68 4.45 -1.56 -0.01 2.67 16 27 H 0.27 7.66 7.20 -40.82 -0.29 7.37 16 28 H 0.05 1.01 8.02 -51.93 -0.42 0.60 16 29 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 30 H 0.07 1.62 7.91 -51.93 -0.41 1.21 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.35 7.20 -51.93 -0.37 0.98 16 33 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.21 3.74 2.42 -52.49 -0.13 3.61 16 35 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 0.65 8.10 -51.92 -0.42 0.23 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.44 4.35 -51.93 -0.23 1.21 16 44 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 45 H 0.04 0.80 7.49 -51.92 -0.39 0.41 16 46 H 0.08 1.87 4.87 -51.93 -0.25 1.62 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -31.62 356.16 -11.36 -42.97 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.69 Total: 2.82 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.38 Total: -8.87 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.15 Total: -50.75 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.11 Total: 20.65 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.47 Total: -0.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.62 -11.36 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989616922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.653 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds