Wall clock time and date at job start Tue Mar 31 2020 18:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99735 * 2 1 4 4 H 1.48496 * 109.47403 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47007 * 240.00042 * 3 2 1 6 6 H 1.48498 * 109.47059 * 120.00665 * 3 2 1 7 7 C 1.38811 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99758 * 216.14565 * 7 2 1 9 9 N 1.36942 * 119.99960 * 36.15399 * 7 2 1 10 10 C 1.43462 * 118.93886 * 202.86925 * 9 7 2 11 11 C 1.53799 * 107.95798 * 273.60958 * 10 9 7 12 12 C 1.47142 * 111.83935 * 281.66629 * 11 10 9 13 13 N 1.48211 * 110.34350 * 58.29502 * 12 11 10 14 14 C 1.34780 * 119.96566 * 102.47015 * 13 12 11 15 15 O 1.21633 * 120.00075 * 353.93162 * 14 13 12 16 16 C 1.47195 * 119.99469 * 173.92747 * 14 13 12 17 17 C 1.35624 * 123.19159 * 21.01632 * 16 14 13 18 18 S 1.70265 * 110.84061 * 179.97438 * 17 16 14 19 19 C 1.75591 * 92.62772 * 359.97438 * 18 17 16 20 20 C 1.34008 * 110.59890 * 359.75527 * 19 18 17 21 21 C 1.52025 * 123.45649 * 179.68744 * 20 19 18 22 22 C 1.53041 * 108.81839 * 343.35816 * 21 20 19 23 23 C 1.53154 * 109.20957 * 50.44106 * 22 21 20 24 24 C 1.51611 * 125.04543 * 180.02562 * 19 18 17 25 25 C 1.43615 * 120.06247 * 282.49410 * 13 12 11 26 26 C 1.48859 * 118.93792 * 22.59669 * 9 7 2 27 27 H 0.97001 * 119.99839 * 186.30799 * 1 2 3 28 28 H 1.09000 * 109.76698 * 33.22036 * 10 9 7 29 29 H 1.09001 * 109.76610 * 153.94238 * 10 9 7 30 30 H 1.08998 * 109.01036 * 42.27009 * 11 10 9 31 31 H 1.09001 * 109.00692 * 161.13586 * 11 10 9 32 32 H 1.09006 * 109.32627 * 178.56699 * 12 11 10 33 33 H 1.09005 * 109.32310 * 298.20414 * 12 11 10 34 34 H 1.07994 * 124.57338 * 359.97438 * 17 16 14 35 35 H 1.08997 * 109.72901 * 223.45554 * 21 20 19 36 36 H 1.08997 * 109.38919 * 103.05476 * 21 20 19 37 37 H 1.09007 * 109.51449 * 290.52132 * 22 21 20 38 38 H 1.09005 * 109.51807 * 170.36565 * 22 21 20 39 39 H 1.09006 * 109.54518 * 169.75336 * 23 22 21 40 40 H 1.09001 * 109.54244 * 49.49670 * 23 22 21 41 41 H 1.09003 * 109.59787 * 283.14864 * 24 19 18 42 42 H 1.09000 * 109.60029 * 43.61413 * 24 19 18 43 43 H 1.09005 * 108.87496 * 211.44725 * 25 13 12 44 44 H 1.09002 * 108.87532 * 329.87886 * 25 13 12 45 45 H 1.09008 * 109.48025 * 260.62370 * 26 9 7 46 46 H 1.08992 * 109.48378 * 20.66030 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 -1.2126 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 2.9343 -1.2924 0.5511 9 7 1.5233 -2.2736 -0.7007 10 6 1.9325 -3.5951 -0.3208 11 6 3.2512 -3.9103 -1.0468 12 6 3.0267 -4.2819 -2.4527 13 7 2.3264 -3.1896 -3.1689 14 6 3.0161 -2.3710 -3.9878 15 8 4.2275 -2.4571 -4.0546 16 6 2.3032 -1.3727 -4.8014 17 6 1.0573 -0.9262 -4.5051 18 16 0.5364 0.2206 -5.6507 19 6 2.0320 0.1073 -6.5638 20 6 2.8689 -0.7687 -5.9909 21 6 4.2460 -1.0974 -6.5448 22 6 4.3206 -0.6207 -7.9972 23 6 3.8545 0.8361 -8.0739 24 6 2.3451 0.8922 -7.8226 25 6 0.9137 -3.0024 -2.9907 26 6 0.5816 -2.0299 -1.8275 27 1 -0.4850 -0.8350 0.0923 28 1 2.0862 -3.6377 0.7575 29 1 1.1687 -4.3158 -0.6129 30 1 3.8953 -3.0317 -1.0104 31 1 3.7483 -4.7359 -0.5375 32 1 3.9866 -4.4713 -2.9334 33 1 2.4182 -5.1853 -2.4942 34 1 0.4744 -1.2539 -3.6571 35 1 4.4113 -2.1740 -6.5046 36 1 5.0054 -0.5865 -5.9530 37 1 3.6757 -1.2426 -8.6181 38 1 5.3488 -0.6933 -8.3519 39 1 4.0746 1.2378 -9.0631 40 1 4.3721 1.4249 -7.3166 41 1 1.8173 0.4520 -8.6686 42 1 2.0341 1.9289 -7.6939 43 1 0.4914 -2.6055 -3.9140 44 1 0.4536 -3.9682 -2.7815 45 1 -0.4410 -2.1980 -1.4895 46 1 0.6861 -1.0013 -2.1726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989616922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:15 Heat of formation + Delta-G solvation = 25.856996 kcal Electronic energy + Delta-G solvation = -28361.293659 eV Core-core repulsion = 24764.139950 eV Total energy + Delta-G solvation = -3597.153709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.75556 -39.68455 -38.60615 -36.53744 -36.04605 -34.29229 -32.90067 -31.70799 -30.02374 -29.64987 -27.28306 -25.70620 -25.45721 -24.24269 -23.68834 -22.23621 -21.59586 -20.26337 -19.47379 -19.10566 -18.37799 -17.74044 -17.34981 -16.72115 -16.31780 -16.01887 -15.67456 -15.54405 -15.38138 -14.94672 -14.78213 -14.68657 -14.48258 -14.12224 -14.02783 -13.88494 -13.73162 -13.47461 -13.19120 -12.99706 -12.69898 -12.60567 -12.38506 -12.21078 -12.09562 -12.06190 -11.96679 -11.84724 -11.72800 -11.59060 -11.46325 -11.26993 -10.77860 -10.35678 -9.73468 -9.54749 -9.24187 -8.95618 -8.34031 -5.32213 -0.22573 0.58367 0.93011 0.96572 1.46033 1.52229 1.71434 2.03246 2.22029 2.55923 3.02021 3.44075 3.56380 3.65772 3.86764 3.99509 4.01379 4.03536 4.06999 4.08919 4.25180 4.30006 4.33947 4.40675 4.50257 4.60156 4.61025 4.64175 4.68589 4.75661 4.85508 4.89053 4.92064 4.98907 4.99608 5.03119 5.09229 5.12616 5.19158 5.33698 5.38656 5.44466 5.57326 5.65565 5.85346 6.34027 6.41523 7.05552 7.13257 7.77940 8.15181 8.90395 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.005276 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.566244 B = 5305.919595 C = 6312.522260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.049 4.049 3 Si 1.073 2.927 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.363 4.363 8 H 0.032 0.968 9 N -0.602 5.602 10 C 0.160 3.840 11 C -0.154 4.154 12 C 0.129 3.871 13 N -0.580 5.580 14 C 0.571 3.429 15 O -0.578 6.578 16 C -0.171 4.171 17 C -0.251 4.251 18 S 0.210 5.790 19 C -0.204 4.204 20 C -0.082 4.082 21 C -0.045 4.045 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.043 4.043 25 C 0.069 3.931 26 C 0.130 3.870 27 H 0.258 0.742 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.034 0.966 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -3.904 -18.007 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.249 4.249 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.228 1.228 6 H -0.206 1.206 7 C -0.493 4.493 8 H 0.050 0.950 9 N -0.325 5.325 10 C 0.033 3.967 11 C -0.194 4.194 12 C 0.008 3.992 13 N -0.310 5.310 14 C 0.360 3.640 15 O -0.461 6.461 16 C -0.189 4.189 17 C -0.388 4.388 18 S 0.480 5.520 19 C -0.321 4.321 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.082 4.082 25 C -0.057 4.057 26 C 0.005 3.995 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.217 0.783 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.051 0.949 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.259 -1.505 -18.234 18.297 hybrid contribution 1.593 -2.425 1.546 3.288 sum 1.333 -3.931 -16.688 17.197 Atomic orbital electron populations 1.70922 1.07153 1.29259 1.48100 1.26313 0.96163 1.03065 0.99370 0.83412 0.74921 0.75018 0.76656 1.20566 1.22792 1.20558 1.19869 1.04246 0.93770 1.31379 0.94964 1.43799 1.54019 1.02208 1.32510 1.20445 0.93957 0.85936 0.96342 1.21646 1.00301 1.00556 0.96942 1.20730 0.98171 0.88629 0.91662 1.47302 1.09080 1.31375 1.43208 1.18025 0.86417 0.80321 0.79261 1.90663 1.14642 1.71288 1.69463 1.20214 0.95367 1.03555 0.99755 1.27109 1.00882 1.03739 1.07083 1.82633 1.16166 1.37686 1.15545 1.25173 0.97926 1.04656 1.04375 1.20520 0.98065 0.97154 0.93547 1.20377 0.90607 1.00754 0.96737 1.21595 1.02632 0.96907 0.93901 1.21605 0.94118 0.96420 1.03137 1.20500 0.97682 0.98862 0.91152 1.22613 0.81457 1.01856 0.99741 1.22279 0.92371 0.97682 0.87212 0.93198 0.94735 0.92012 0.95861 0.89347 0.90725 0.87985 0.78343 0.91978 0.92401 0.90838 0.89895 0.88118 0.92727 0.88081 0.89138 0.87328 0.88404 0.94866 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.38 12.64 21.65 0.27 -53.11 16 2 C -0.05 -2.80 4.32 84.86 0.37 -2.43 16 3 Si 1.07 53.29 30.04 68.60 2.06 55.35 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.36 -20.61 9.04 84.03 0.76 -19.85 16 8 H 0.03 1.95 8.03 -2.91 -0.02 1.92 16 9 N -0.60 -29.11 2.43 -697.38 -1.69 -30.81 16 10 C 0.16 6.40 5.63 87.21 0.49 6.89 16 11 C -0.15 -5.62 5.64 29.04 0.16 -5.45 16 12 C 0.13 4.22 5.66 84.23 0.48 4.69 16 13 N -0.58 -21.49 2.46 -834.63 -2.05 -23.54 16 14 C 0.57 23.80 7.55 86.60 0.65 24.46 16 15 O -0.58 -26.90 14.71 -4.13 -0.06 -26.96 16 16 C -0.17 -6.44 5.77 -19.82 -0.11 -6.55 16 17 C -0.25 -8.71 8.03 67.21 0.54 -8.17 16 18 S 0.21 5.73 22.99 -56.49 -1.30 4.43 16 19 C -0.20 -5.47 6.32 25.01 0.16 -5.32 16 20 C -0.08 -2.69 5.94 -18.69 -0.11 -2.80 16 21 C -0.05 -1.34 4.93 30.29 0.15 -1.19 16 22 C -0.11 -2.23 5.90 30.66 0.18 -2.05 16 23 C -0.11 -1.95 5.93 30.68 0.18 -1.77 16 24 C -0.04 -0.77 6.26 30.18 0.19 -0.59 16 25 C 0.07 2.31 4.71 87.67 0.41 2.72 16 26 C 0.13 5.63 4.45 86.68 0.39 6.01 16 27 H 0.26 15.13 7.20 -92.71 -0.67 14.47 16 28 H 0.03 1.45 8.02 -2.39 -0.02 1.44 16 29 H 0.06 2.10 7.59 -2.39 -0.02 2.08 16 30 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.07 2.53 7.20 -2.38 -0.02 2.51 16 33 H 0.10 2.54 8.05 -2.38 -0.02 2.52 16 34 H 0.20 7.20 2.42 -2.91 -0.01 7.20 16 35 H 0.06 1.99 7.57 -2.39 -0.02 1.98 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.32 8.10 -2.38 -0.02 1.30 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.05 1.09 8.11 -2.39 -0.02 1.07 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 43 H 0.11 3.34 4.35 -2.38 -0.01 3.33 16 44 H 0.10 2.69 7.73 -2.39 -0.02 2.67 16 45 H 0.03 1.45 7.49 -2.38 -0.02 1.43 16 46 H 0.05 2.42 4.87 -2.39 -0.01 2.40 16 Total: -1.00 -72.02 356.16 3.21 -68.81 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.10 Total: 17.22 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 4.88 Total: -11.39 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.47 Total: -107.45 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.96 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.06 Total: 55.35 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.30 Total: 4.43 kcal Total: -72.02 3.21 -68.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989616922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.664 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds