Wall clock time and date at job start Tue Mar 31 2020 18:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47455 * 269.99724 * 3 2 1 5 5 H 1.48504 * 109.47292 * 30.00304 * 3 2 1 6 6 H 1.48508 * 109.47057 * 149.99573 * 3 2 1 7 7 C 1.38807 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00361 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.46074 * 155.00105 * 10 9 7 12 12 C 1.53197 * 109.31475 * 181.38781 * 11 10 9 13 13 N 1.46920 * 108.77441 * 305.36828 * 12 11 10 14 14 C 1.34777 * 120.63264 * 233.58225 * 13 12 11 15 15 O 1.21638 * 119.99336 * 5.60311 * 14 13 12 16 16 C 1.47187 * 120.00502 * 185.32527 * 14 13 12 17 17 C 1.35621 * 123.18702 * 45.61840 * 16 14 13 18 18 S 1.70269 * 110.84352 * 179.89242 * 17 16 14 19 19 C 1.75591 * 92.62344 * 0.32454 * 18 17 16 20 20 C 1.34009 * 110.60016 * 359.81423 * 19 18 17 21 21 C 1.52018 * 123.46050 * 180.02562 * 20 19 18 22 22 C 1.53045 * 108.76013 * 342.86971 * 21 20 19 23 23 C 1.53161 * 109.21214 * 50.64079 * 22 21 20 24 24 C 1.51618 * 125.04657 * 179.81525 * 19 18 17 25 25 C 1.46929 * 118.74220 * 53.85832 * 13 12 11 26 26 C 1.53039 * 109.46487 * 275.07350 * 10 9 7 27 27 H 0.96997 * 120.00608 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99597 * 0.02562 * 9 7 2 29 29 H 1.09006 * 109.46109 * 35.03188 * 10 9 7 30 30 H 1.08999 * 109.49465 * 61.44010 * 11 10 9 31 31 H 1.09000 * 109.52760 * 301.35727 * 11 10 9 32 32 H 1.08993 * 109.58762 * 185.57733 * 12 11 10 33 33 H 1.09000 * 109.69984 * 65.22436 * 12 11 10 34 34 H 1.08006 * 124.58306 * 0.02562 * 17 16 14 35 35 H 1.09000 * 109.58973 * 102.66100 * 21 20 19 36 36 H 1.09002 * 109.58547 * 223.09855 * 21 20 19 37 37 H 1.08998 * 109.51874 * 290.71814 * 22 21 20 38 38 H 1.09000 * 109.55486 * 170.58598 * 22 21 20 39 39 H 1.08997 * 109.54082 * 169.75149 * 23 22 21 40 40 H 1.09002 * 109.53694 * 49.49469 * 23 22 21 41 41 H 1.08995 * 109.59343 * 283.11351 * 24 19 18 42 42 H 1.09000 * 109.59747 * 43.58251 * 24 19 18 43 43 H 1.09005 * 109.58348 * 65.92680 * 25 13 12 44 44 H 1.08996 * 109.58851 * 186.35242 * 25 13 12 45 45 H 1.08999 * 109.49367 * 298.56279 * 26 10 9 46 46 H 1.08997 * 109.50032 * 58.65810 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9620 -6.0695 0.6405 13 7 2.4416 -6.3659 -0.7162 14 6 2.1738 -7.5531 -1.2952 15 8 1.4450 -8.3512 -0.7370 16 6 2.7583 -7.8816 -2.6055 17 6 4.0620 -7.6675 -2.9115 18 16 4.3996 -8.1632 -4.5051 19 6 2.7414 -8.6682 -4.7851 20 6 1.9938 -8.4585 -3.6929 21 6 0.5128 -8.7922 -3.6142 22 6 -0.0280 -8.9693 -5.0349 23 6 0.8752 -9.9408 -5.8005 24 6 2.2184 -9.2603 -6.0792 25 6 3.2240 -5.3458 -1.4276 26 6 2.4236 -4.0346 -1.4367 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 2.9685 -3.5505 0.5905 30 1 0.2815 -4.8763 0.0065 31 1 0.9008 -4.4718 1.6259 32 1 1.3099 -6.8735 0.9814 33 1 2.8120 -5.9770 1.3165 34 1 4.7886 -7.2421 -2.2350 35 1 0.3757 -9.7165 -3.0530 36 1 -0.0191 -7.9794 -3.1196 37 1 -0.0392 -8.0052 -5.5432 38 1 -1.0407 -9.3703 -4.9925 39 1 0.4015 -10.2127 -6.7438 40 1 1.0378 -10.8367 -5.2012 41 1 2.0808 -8.4677 -6.8146 42 1 2.9287 -9.9949 -6.4585 43 1 4.1750 -5.1931 -0.9173 44 1 3.4047 -5.6723 -2.4517 45 1 1.5129 -4.1655 -2.0212 46 1 3.0292 -3.2431 -1.8782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997269327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:51 Heat of formation + Delta-G solvation = -7.988808 kcal Electronic energy + Delta-G solvation = -26766.423169 eV Core-core repulsion = 23167.801797 eV Total energy + Delta-G solvation = -3598.621373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40074 -38.77014 -37.21855 -35.27282 -34.39726 -32.03818 -31.05504 -30.83511 -29.47503 -28.93793 -25.69340 -24.19450 -23.59586 -22.92563 -22.67833 -21.58473 -20.13047 -18.97832 -18.44538 -17.42494 -17.11038 -16.81290 -15.82091 -15.00109 -14.91798 -14.83655 -14.57041 -14.29180 -14.03056 -13.74546 -13.62633 -13.50779 -13.36951 -13.12025 -13.08483 -12.70755 -12.48635 -12.26136 -11.94295 -11.68649 -11.62362 -11.44215 -11.08315 -10.96706 -10.90948 -10.86414 -10.81434 -10.58325 -10.47723 -10.24912 -9.84288 -9.76919 -9.67614 -8.94126 -8.72586 -8.54900 -8.37815 -6.99280 -5.79110 -3.08420 0.70385 1.35397 1.75109 1.97271 2.90200 3.28289 3.41033 3.46174 3.48019 4.31293 4.51592 4.55950 4.63763 4.69977 4.75656 4.98223 5.03936 5.14126 5.29123 5.32340 5.33308 5.38025 5.39259 5.41839 5.52250 5.54798 5.64175 5.67525 5.68629 5.71506 5.81076 5.88998 5.93837 6.01238 6.06296 6.11121 6.21958 6.33264 6.37792 6.40967 6.50718 6.63662 6.88824 7.03204 7.50398 7.66455 8.23033 8.39100 9.50271 10.07903 10.42657 11.43455 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.002806 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.177442 B = 9977.907217 C =10182.451463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.117 3.883 13 N -0.598 5.598 14 C 0.577 3.423 15 O -0.541 6.541 16 C -0.134 4.134 17 C -0.217 4.217 18 S 0.171 5.829 19 C -0.204 4.204 20 C -0.057 4.057 21 C -0.054 4.054 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.044 4.044 25 C 0.100 3.900 26 C -0.149 4.149 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.878 -21.001 -11.259 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.331 5.331 14 C 0.364 3.636 15 O -0.419 6.419 16 C -0.152 4.152 17 C -0.354 4.354 18 S 0.441 5.559 19 C -0.321 4.321 20 C -0.068 4.068 21 C -0.093 4.093 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.083 4.083 25 C -0.023 4.023 26 C -0.190 4.190 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.188 0.812 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.973 -21.222 -11.798 25.556 hybrid contribution -0.870 1.275 1.000 1.839 sum 7.104 -19.946 -10.798 23.768 Atomic orbital electron populations 1.69660 1.05123 1.25686 1.57556 1.24747 0.95499 0.97698 1.02973 0.86211 0.78659 0.83927 0.77504 1.21735 1.21779 1.20766 1.19225 0.90945 0.84099 1.42826 0.91201 1.42434 1.05815 0.99693 1.88489 1.20165 0.94418 0.86097 0.92428 1.22197 0.99233 0.94046 1.02245 1.21640 0.98776 0.98248 0.81908 1.48060 1.53709 1.14421 1.16889 1.17705 0.80297 0.81551 0.84095 1.90764 1.37228 1.49106 1.64824 1.20051 0.93489 1.05861 0.95826 1.25405 1.00076 1.07455 1.02504 1.82849 1.08552 1.58770 1.05737 1.24648 0.96655 1.10256 1.00553 1.20340 0.96827 0.98971 0.90668 1.20466 0.89076 1.02651 0.97132 1.21602 0.98956 0.99991 0.95341 1.21581 0.94581 0.98648 1.00639 1.20308 0.96907 0.99321 0.91740 1.22162 0.94310 0.88773 0.97030 1.22737 1.00001 0.94563 1.01701 0.93485 0.78255 0.93459 0.91794 0.90500 0.89261 0.91500 0.81157 0.89855 0.90435 0.91493 0.91130 0.91093 0.91407 0.90195 0.90545 0.91608 0.89919 0.92196 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.81 5.12 -53.39 -0.27 -18.09 16 10 C 0.18 3.44 2.73 -67.89 -0.19 3.25 16 11 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 12 C 0.12 1.71 6.44 -3.71 -0.02 1.69 16 13 N -0.60 -8.78 2.97 -173.86 -0.52 -9.29 16 14 C 0.58 8.97 7.16 -12.63 -0.09 8.88 16 15 O -0.54 -9.82 15.97 5.24 0.08 -9.73 16 16 C -0.13 -1.79 5.00 -104.56 -0.52 -2.31 16 17 C -0.22 -2.37 8.41 29.80 0.25 -2.12 16 18 S 0.17 1.57 22.99 -107.50 -2.47 -0.90 16 19 C -0.20 -2.10 6.32 -35.34 -0.22 -2.32 16 20 C -0.06 -0.70 5.94 -102.82 -0.61 -1.31 16 21 C -0.05 -0.63 5.37 -27.21 -0.15 -0.77 16 22 C -0.12 -1.07 5.90 -26.62 -0.16 -1.22 16 23 C -0.12 -0.85 5.93 -26.58 -0.16 -1.00 16 24 C -0.04 -0.33 6.26 -27.37 -0.17 -0.50 16 25 C 0.10 1.37 5.42 -3.48 -0.02 1.35 16 26 C -0.15 -2.55 5.67 -26.39 -0.15 -2.70 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 29 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.34 6.99 -51.93 -0.36 0.98 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.17 1.60 7.40 -52.48 -0.39 1.21 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.04 5.00 -51.93 -0.26 0.78 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -31.71 373.83 -11.65 -43.37 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.21 Total: 7.86 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.60 Total: -8.68 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.06 Total: -54.63 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.71 -11.65 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997269327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.377 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds