Wall clock time and date at job start Tue Mar 31 2020 18:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47455 * 269.99724 * 3 2 1 5 5 H 1.48504 * 109.47292 * 30.00304 * 3 2 1 6 6 H 1.48508 * 109.47057 * 149.99573 * 3 2 1 7 7 C 1.38807 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00361 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.46074 * 155.00105 * 10 9 7 12 12 C 1.53197 * 109.31475 * 181.38781 * 11 10 9 13 13 N 1.46920 * 108.77441 * 305.36828 * 12 11 10 14 14 C 1.34777 * 120.63264 * 233.58225 * 13 12 11 15 15 O 1.21638 * 119.99336 * 5.60311 * 14 13 12 16 16 C 1.47187 * 120.00502 * 185.32527 * 14 13 12 17 17 C 1.35621 * 123.18702 * 45.61840 * 16 14 13 18 18 S 1.70269 * 110.84352 * 179.89242 * 17 16 14 19 19 C 1.75591 * 92.62344 * 0.32454 * 18 17 16 20 20 C 1.34009 * 110.60016 * 359.81423 * 19 18 17 21 21 C 1.52018 * 123.46050 * 180.02562 * 20 19 18 22 22 C 1.53045 * 108.76013 * 342.86971 * 21 20 19 23 23 C 1.53161 * 109.21214 * 50.64079 * 22 21 20 24 24 C 1.51618 * 125.04657 * 179.81525 * 19 18 17 25 25 C 1.46929 * 118.74220 * 53.85832 * 13 12 11 26 26 C 1.53039 * 109.46487 * 275.07350 * 10 9 7 27 27 H 0.96997 * 120.00608 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99597 * 0.02562 * 9 7 2 29 29 H 1.09006 * 109.46109 * 35.03188 * 10 9 7 30 30 H 1.08999 * 109.49465 * 61.44010 * 11 10 9 31 31 H 1.09000 * 109.52760 * 301.35727 * 11 10 9 32 32 H 1.08993 * 109.58762 * 185.57733 * 12 11 10 33 33 H 1.09000 * 109.69984 * 65.22436 * 12 11 10 34 34 H 1.08006 * 124.58306 * 0.02562 * 17 16 14 35 35 H 1.09000 * 109.58973 * 102.66100 * 21 20 19 36 36 H 1.09002 * 109.58547 * 223.09855 * 21 20 19 37 37 H 1.08998 * 109.51874 * 290.71814 * 22 21 20 38 38 H 1.09000 * 109.55486 * 170.58598 * 22 21 20 39 39 H 1.08997 * 109.54082 * 169.75149 * 23 22 21 40 40 H 1.09002 * 109.53694 * 49.49469 * 23 22 21 41 41 H 1.08995 * 109.59343 * 283.11351 * 24 19 18 42 42 H 1.09000 * 109.59747 * 43.58251 * 24 19 18 43 43 H 1.09005 * 109.58348 * 65.92680 * 25 13 12 44 44 H 1.08996 * 109.58851 * 186.35242 * 25 13 12 45 45 H 1.08999 * 109.49367 * 298.56279 * 26 10 9 46 46 H 1.08997 * 109.50032 * 58.65810 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.1804 -4.7522 0.6103 12 6 1.9620 -6.0695 0.6405 13 7 2.4416 -6.3659 -0.7162 14 6 2.1738 -7.5531 -1.2952 15 8 1.4450 -8.3512 -0.7370 16 6 2.7583 -7.8816 -2.6055 17 6 4.0620 -7.6675 -2.9115 18 16 4.3996 -8.1632 -4.5051 19 6 2.7414 -8.6682 -4.7851 20 6 1.9938 -8.4585 -3.6929 21 6 0.5128 -8.7922 -3.6142 22 6 -0.0280 -8.9693 -5.0349 23 6 0.8752 -9.9408 -5.8005 24 6 2.2184 -9.2603 -6.0792 25 6 3.2240 -5.3458 -1.4276 26 6 2.4236 -4.0346 -1.4367 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 2.9685 -3.5505 0.5905 30 1 0.2815 -4.8763 0.0065 31 1 0.9008 -4.4718 1.6259 32 1 1.3099 -6.8735 0.9814 33 1 2.8120 -5.9770 1.3165 34 1 4.7886 -7.2421 -2.2350 35 1 0.3757 -9.7165 -3.0530 36 1 -0.0191 -7.9794 -3.1196 37 1 -0.0392 -8.0052 -5.5432 38 1 -1.0407 -9.3703 -4.9925 39 1 0.4015 -10.2127 -6.7438 40 1 1.0378 -10.8367 -5.2012 41 1 2.0808 -8.4677 -6.8146 42 1 2.9287 -9.9949 -6.4585 43 1 4.1750 -5.1931 -0.9173 44 1 3.4047 -5.6723 -2.4517 45 1 1.5129 -4.1655 -2.0212 46 1 3.0292 -3.2431 -1.8782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997269327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:51 Heat of formation + Delta-G solvation = -25.705910 kcal Electronic energy + Delta-G solvation = -26767.191441 eV Core-core repulsion = 23167.801797 eV Total energy + Delta-G solvation = -3599.389644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52588 -39.69536 -38.57421 -36.32668 -35.87529 -33.79927 -32.20276 -31.72379 -31.07333 -29.93942 -27.06931 -25.64548 -24.54305 -24.10418 -23.95431 -22.64045 -21.44286 -20.15391 -19.24681 -19.09133 -18.28353 -18.00314 -16.94557 -16.70753 -16.16740 -15.68723 -15.57579 -15.42394 -15.25087 -15.23536 -14.89661 -14.74537 -14.48773 -14.22227 -14.15120 -13.72738 -13.60675 -13.31155 -13.18645 -13.08290 -12.84572 -12.67985 -12.44415 -12.38378 -12.19588 -12.15345 -12.02756 -11.75925 -11.70863 -11.59259 -11.34835 -11.28953 -11.00827 -10.84099 -9.76809 -9.54185 -9.21788 -9.01445 -7.93501 -5.22759 -0.14899 0.58778 0.89993 1.04376 1.47923 1.49351 1.57639 1.76306 2.16945 2.56560 3.39454 3.51176 3.61437 3.78239 3.83915 3.92600 3.98738 4.04862 4.09191 4.13492 4.26025 4.28553 4.34449 4.35980 4.57383 4.58684 4.63385 4.68769 4.73314 4.79061 4.81690 4.82642 4.94414 4.97768 5.00300 5.03783 5.07815 5.17233 5.26914 5.33090 5.42618 5.46052 5.52068 5.53371 5.58679 6.27596 6.32625 7.04986 7.33675 8.08826 8.32269 9.30270 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.002806 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.177442 B = 9977.907217 C =10182.451463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.175 3.825 11 C -0.127 4.127 12 C 0.123 3.877 13 N -0.600 5.600 14 C 0.575 3.425 15 O -0.577 6.577 16 C -0.166 4.166 17 C -0.218 4.218 18 S 0.235 5.765 19 C -0.205 4.205 20 C -0.088 4.088 21 C -0.053 4.053 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.046 4.046 25 C 0.111 3.889 26 C -0.139 4.139 27 H 0.249 0.751 28 H 0.369 0.631 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.187 0.813 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.038 0.962 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -21.975 -12.987 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.067 3.933 11 C -0.166 4.166 12 C 0.000 4.000 13 N -0.331 5.331 14 C 0.363 3.637 15 O -0.458 6.458 16 C -0.184 4.184 17 C -0.356 4.356 18 S 0.505 5.495 19 C -0.322 4.322 20 C -0.098 4.098 21 C -0.092 4.092 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.085 4.085 25 C -0.011 4.011 26 C -0.180 4.180 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.205 0.795 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.057 0.943 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.956 -22.230 -13.538 28.240 hybrid contribution -1.731 1.496 1.505 2.738 sum 9.225 -20.734 -12.034 25.687 Atomic orbital electron populations 1.69829 1.06754 1.25940 1.59846 1.25570 0.96308 1.01157 1.04033 0.85158 0.77780 0.79580 0.77367 1.21499 1.22619 1.19129 1.19640 0.91525 0.84994 1.40522 0.90172 1.42672 1.05374 1.01079 1.88626 1.20402 0.94395 0.84636 0.93910 1.22053 0.98451 0.94581 1.01539 1.21573 0.99290 0.96448 0.82661 1.48121 1.53663 1.14526 1.16825 1.18117 0.79624 0.81213 0.84708 1.90732 1.38920 1.50248 1.65908 1.19985 0.94734 1.08518 0.95182 1.25695 0.99365 1.06484 1.04077 1.82652 1.06734 1.56701 1.03427 1.25092 0.97444 1.08886 1.00828 1.20431 0.97141 1.00754 0.91493 1.20390 0.89397 1.00854 0.98581 1.21592 0.99768 1.00509 0.93672 1.21579 0.94347 0.97836 1.01305 1.20482 0.97316 1.00099 0.90605 1.22154 0.94237 0.86327 0.98405 1.22520 0.99517 0.96463 0.99453 0.94179 0.79932 0.92820 0.93618 0.90616 0.89798 0.89127 0.79537 0.91182 0.93291 0.91768 0.90327 0.88779 0.91795 0.88998 0.88477 0.88913 0.88351 0.94336 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.84 13.06 21.65 0.28 -59.55 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.24 -12.75 9.93 84.03 0.83 -11.92 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -36.91 5.12 -322.82 -1.65 -38.56 16 10 C 0.17 6.67 2.73 45.02 0.12 6.79 16 11 C -0.13 -4.32 5.55 30.67 0.17 -4.15 16 12 C 0.12 3.54 6.44 86.37 0.56 4.09 16 13 N -0.60 -17.17 2.97 -822.21 -2.44 -19.61 16 14 C 0.58 17.98 7.16 86.59 0.62 18.60 16 15 O -0.58 -21.71 15.97 -4.15 -0.07 -21.78 16 16 C -0.17 -4.30 5.00 -19.83 -0.10 -4.40 16 17 C -0.22 -4.24 8.41 67.21 0.57 -3.67 16 18 S 0.23 3.52 22.99 -56.49 -1.30 2.22 16 19 C -0.21 -3.77 6.32 25.01 0.16 -3.61 16 20 C -0.09 -2.12 5.94 -18.70 -0.11 -2.24 16 21 C -0.05 -1.28 5.37 30.29 0.16 -1.12 16 22 C -0.12 -2.02 5.90 30.66 0.18 -1.84 16 23 C -0.11 -1.41 5.93 30.69 0.18 -1.22 16 24 C -0.05 -0.57 6.26 30.18 0.19 -0.38 16 25 C 0.11 2.83 5.42 86.51 0.47 3.30 16 26 C -0.14 -4.68 5.67 30.82 0.17 -4.51 16 27 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 28 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 29 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 2.55 6.99 -2.39 -0.02 2.53 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.19 2.87 7.40 -2.91 -0.02 2.85 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 37 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.10 2.24 5.00 -2.39 -0.01 2.23 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -70.49 373.83 1.76 -68.73 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.26 Total: 31.19 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.64 Total: -10.29 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -3.81 Total: -117.73 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.07 Total: -21.78 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.30 Total: 2.22 kcal Total: -70.49 1.76 -68.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997269327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.026 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds