Wall clock time and date at job start Tue Mar 31 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48508 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47403 * 300.00025 * 3 2 1 6 6 H 1.48496 * 109.47297 * 60.00530 * 3 2 1 7 7 C 1.38819 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99742 * 180.02562 * 9 7 2 11 11 C 1.53070 * 109.44278 * 84.79956 * 10 9 7 12 12 C 1.53195 * 109.29524 * 181.23594 * 11 10 9 13 13 N 1.46919 * 108.89273 * 305.57804 * 12 11 10 14 14 C 1.34784 * 120.63188 * 233.51696 * 13 12 11 15 15 O 1.21276 * 119.99470 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99966 * 179.97438 * 14 13 12 17 17 H 1.08997 * 110.66775 * 304.29603 * 16 14 13 18 18 C 1.54707 * 110.75370 * 67.52443 * 16 14 13 19 19 C 1.52137 * 101.71059 * 93.10189 * 18 16 14 20 20 C 1.37813 * 132.11155 * 195.89706 * 19 18 16 21 21 C 1.38326 * 120.02226 * 179.02939 * 20 19 18 22 22 C 1.38297 * 119.78336 * 359.97438 * 21 20 19 23 23 C 1.38107 * 120.32188 * 0.19752 * 22 21 20 24 24 F 1.35098 * 119.89871 * 180.02562 * 23 22 21 25 25 C 1.38785 * 107.08875 * 15.37896 * 19 18 16 26 26 O 1.36198 * 111.24586 * 1.08611 * 25 19 18 27 27 C 1.46928 * 118.73982 * 53.53793 * 13 12 11 28 28 C 1.53039 * 109.46033 * 205.00442 * 10 9 7 29 29 H 0.97000 * 120.00375 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00238 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.45852 * 324.97183 * 10 9 7 32 32 H 1.08997 * 109.38860 * 61.35781 * 11 10 9 33 33 H 1.09003 * 109.62046 * 301.25123 * 11 10 9 34 34 H 1.09002 * 109.58720 * 185.71834 * 12 11 10 35 35 H 1.08996 * 109.58651 * 65.43731 * 12 11 10 36 36 H 1.09002 * 110.93578 * 211.21108 * 18 16 14 37 37 H 1.09008 * 110.93307 * 334.87925 * 18 16 14 38 38 H 1.08003 * 119.99031 * 359.04888 * 20 19 18 39 39 H 1.07999 * 120.11043 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.84034 * 180.17378 * 22 21 20 41 41 H 1.08998 * 109.58787 * 66.18123 * 27 13 12 42 42 H 1.09007 * 109.58600 * 186.46436 * 27 13 12 43 43 H 1.09002 * 109.49876 * 58.67575 * 28 10 9 44 44 H 1.09005 * 109.52615 * 298.59825 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 2.4261 -4.0326 1.4369 12 6 3.2185 -5.3437 1.4303 13 7 2.4410 -6.3658 0.7167 14 6 2.1728 -7.5531 1.2956 15 8 2.5747 -7.7859 2.4159 16 6 1.3735 -8.5911 0.5508 17 1 0.4142 -8.1828 0.2329 18 6 2.1692 -9.1296 -0.6618 19 6 2.8517 -10.3514 -0.0653 20 6 3.9103 -11.1213 -0.4964 21 6 4.3475 -12.1875 0.2686 22 6 3.7193 -12.4771 1.4662 23 6 2.6558 -11.7095 1.8991 24 9 2.0487 -11.9997 3.0705 25 6 2.2066 -10.6360 1.1301 26 8 1.1847 -9.7651 1.3590 27 6 1.9618 -6.0695 -0.6403 28 6 1.1804 -4.7522 -0.6105 29 1 -0.4851 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9685 -3.5504 -0.5905 32 1 1.5154 -4.1609 2.0219 33 1 3.0339 -3.2424 1.8777 34 1 3.3956 -5.6688 2.4555 35 1 4.1724 -5.1915 0.9254 36 1 1.4984 -9.4138 -1.4726 37 1 2.9019 -8.3981 -1.0027 38 1 4.3990 -10.8918 -1.4318 39 1 5.1772 -12.7915 -0.0677 40 1 4.0616 -13.3076 2.0656 41 1 2.8122 -5.9747 -1.3155 42 1 1.3116 -6.8748 -0.9822 43 1 0.9016 -4.4716 -1.6262 44 1 0.2809 -4.8763 -0.0074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997334122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:18 Heat of formation + Delta-G solvation = -64.198093 kcal Electronic energy + Delta-G solvation = -28749.746906 eV Core-core repulsion = 24582.474940 eV Total energy + Delta-G solvation = -4167.271966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.99297 -41.85150 -39.73777 -37.86807 -37.15024 -34.69404 -33.11656 -32.01501 -31.15602 -30.25199 -29.84742 -29.05201 -25.60056 -24.44285 -23.14359 -22.89234 -22.52510 -22.10973 -20.53301 -19.30915 -18.16103 -17.61279 -17.53516 -17.03653 -16.82191 -16.17253 -15.81723 -15.53765 -15.20401 -14.93090 -14.63409 -14.45495 -13.96782 -13.77844 -13.66605 -13.63105 -13.37514 -13.17282 -13.13403 -12.75938 -12.54520 -12.29767 -12.16990 -11.91999 -11.88269 -11.57790 -11.53899 -11.01204 -10.96726 -10.86989 -10.50955 -10.28803 -10.02629 -9.81433 -9.72665 -9.12396 -8.96992 -8.64764 -8.49039 -7.03931 -5.83232 -3.12682 0.73316 0.83041 2.34990 2.59465 2.98136 3.19593 3.38940 3.44779 3.46958 3.81757 3.90454 4.08831 4.18803 4.45628 4.52139 4.67914 4.77280 4.83916 4.86107 4.95457 5.06320 5.11384 5.23415 5.27157 5.34773 5.47803 5.53225 5.54362 5.69199 5.70278 5.79421 5.83131 5.87355 5.95092 6.08819 6.11708 6.17358 6.36018 6.46171 6.48467 6.72409 6.83107 6.97047 7.30577 7.64085 8.02705 8.34894 9.46448 10.02846 10.37257 11.39310 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.002311 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.076102 B =12112.205935 C =12247.349055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.113 3.887 13 N -0.600 5.600 14 C 0.498 3.502 15 O -0.525 6.525 16 C 0.062 3.938 17 H 0.146 0.854 18 C -0.100 4.100 19 C -0.147 4.147 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.122 4.122 23 C 0.088 3.912 24 F -0.133 7.133 25 C 0.081 3.919 26 O -0.265 6.265 27 C 0.106 3.894 28 C -0.141 4.141 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 -25.238 -4.613 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.191 4.191 12 C -0.009 4.009 13 N -0.335 5.335 14 C 0.283 3.717 15 O -0.401 6.401 16 C 0.002 3.998 17 H 0.164 0.836 18 C -0.137 4.137 19 C -0.148 4.148 20 C -0.097 4.097 21 C -0.138 4.138 22 C -0.141 4.141 23 C 0.068 3.932 24 F -0.112 7.112 25 C 0.034 3.966 26 O -0.178 6.178 27 C -0.017 4.017 28 C -0.180 4.180 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.869 -25.220 -3.817 26.416 hybrid contribution -0.055 1.155 0.209 1.175 sum 6.814 -24.065 -3.608 25.270 Atomic orbital electron populations 1.69663 1.05137 1.25639 1.57551 1.24755 0.95512 0.97755 1.02875 0.86136 0.78796 0.84138 0.77217 1.20534 1.21852 1.21851 1.19266 0.91001 0.84036 1.42840 0.91098 1.42428 1.05791 0.99696 1.88527 1.20157 0.94340 0.86025 0.92568 1.22689 1.00236 0.94727 1.01488 1.21743 0.93774 0.87650 0.97771 1.48147 1.53965 1.14463 1.16885 1.20698 0.80950 0.83025 0.86982 1.90735 1.52068 1.78542 1.18722 1.23413 1.01565 0.85677 0.89111 0.83640 1.21999 0.99453 0.95049 0.97178 1.20738 0.99120 0.99923 0.95025 1.20379 0.94810 0.94249 1.00244 1.20905 1.00746 0.97922 0.94204 1.20934 0.94829 1.00166 0.98139 1.16985 0.95741 0.97290 0.83171 1.91515 1.82140 1.92884 1.44667 1.19533 0.90413 0.92776 0.93852 1.87029 1.40047 1.25665 1.65015 1.21926 0.98803 0.98332 0.82655 1.22228 0.99270 0.94005 1.02534 0.93503 0.78263 0.93357 0.92204 0.90532 0.89656 0.91570 0.87181 0.87720 0.84822 0.84277 0.83786 0.90691 0.90348 0.90177 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.11 5.12 -53.37 -0.27 -17.38 16 10 C 0.18 3.21 2.73 -67.88 -0.19 3.02 16 11 C -0.15 -2.56 5.67 -26.59 -0.15 -2.71 16 12 C 0.11 1.63 6.43 -3.71 -0.02 1.61 16 13 N -0.60 -7.76 2.97 -172.77 -0.51 -8.27 16 14 C 0.50 7.11 6.98 -10.98 -0.08 7.04 16 15 O -0.52 -9.82 15.90 -13.50 -0.21 -10.03 16 16 C 0.06 0.68 3.09 -26.99 -0.08 0.60 16 17 H 0.15 1.20 7.51 -51.93 -0.39 0.81 16 18 C -0.10 -0.79 5.58 -26.27 -0.15 -0.93 16 19 C -0.15 -1.46 6.27 -103.86 -0.65 -2.11 16 20 C -0.08 -0.61 10.03 -39.70 -0.40 -1.01 16 21 C -0.12 -0.86 10.07 -39.53 -0.40 -1.26 16 22 C -0.12 -1.08 9.99 -39.61 -0.40 -1.48 16 23 C 0.09 1.09 7.32 -39.17 -0.29 0.80 16 24 F -0.13 -1.87 17.26 2.25 0.04 -1.83 16 25 C 0.08 1.04 6.84 -38.92 -0.27 0.77 16 26 O -0.27 -3.74 10.42 -39.43 -0.41 -4.15 16 27 C 0.11 1.08 5.16 -3.71 -0.02 1.07 16 28 C -0.14 -1.95 5.55 -26.61 -0.15 -2.10 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 31 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.72 6.77 -51.92 -0.35 0.37 16 38 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.56 5.20 -51.92 -0.27 0.29 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -34.47 362.42 -9.57 -44.04 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.89 Total: 5.77 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.48 Total: -3.68 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.06 Total: -52.42 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.63 Total: -14.19 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.47 -9.57 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997334122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.156 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds