Wall clock time and date at job start Tue Mar 31 2020 18:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48508 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47403 * 300.00025 * 3 2 1 6 6 H 1.48496 * 109.47297 * 60.00530 * 3 2 1 7 7 C 1.38819 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99742 * 180.02562 * 9 7 2 11 11 C 1.53070 * 109.44278 * 84.79956 * 10 9 7 12 12 C 1.53195 * 109.29524 * 181.23594 * 11 10 9 13 13 N 1.46919 * 108.89273 * 305.57804 * 12 11 10 14 14 C 1.34784 * 120.63188 * 233.51696 * 13 12 11 15 15 O 1.21276 * 119.99470 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99966 * 179.97438 * 14 13 12 17 17 H 1.08997 * 110.66775 * 304.29603 * 16 14 13 18 18 C 1.54707 * 110.75370 * 67.52443 * 16 14 13 19 19 C 1.52137 * 101.71059 * 93.10189 * 18 16 14 20 20 C 1.37813 * 132.11155 * 195.89706 * 19 18 16 21 21 C 1.38326 * 120.02226 * 179.02939 * 20 19 18 22 22 C 1.38297 * 119.78336 * 359.97438 * 21 20 19 23 23 C 1.38107 * 120.32188 * 0.19752 * 22 21 20 24 24 F 1.35098 * 119.89871 * 180.02562 * 23 22 21 25 25 C 1.38785 * 107.08875 * 15.37896 * 19 18 16 26 26 O 1.36198 * 111.24586 * 1.08611 * 25 19 18 27 27 C 1.46928 * 118.73982 * 53.53793 * 13 12 11 28 28 C 1.53039 * 109.46033 * 205.00442 * 10 9 7 29 29 H 0.97000 * 120.00375 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00238 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.45852 * 324.97183 * 10 9 7 32 32 H 1.08997 * 109.38860 * 61.35781 * 11 10 9 33 33 H 1.09003 * 109.62046 * 301.25123 * 11 10 9 34 34 H 1.09002 * 109.58720 * 185.71834 * 12 11 10 35 35 H 1.08996 * 109.58651 * 65.43731 * 12 11 10 36 36 H 1.09002 * 110.93578 * 211.21108 * 18 16 14 37 37 H 1.09008 * 110.93307 * 334.87925 * 18 16 14 38 38 H 1.08003 * 119.99031 * 359.04888 * 20 19 18 39 39 H 1.07999 * 120.11043 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.84034 * 180.17378 * 22 21 20 41 41 H 1.08998 * 109.58787 * 66.18123 * 27 13 12 42 42 H 1.09007 * 109.58600 * 186.46436 * 27 13 12 43 43 H 1.09002 * 109.49876 * 58.67575 * 28 10 9 44 44 H 1.09005 * 109.52615 * 298.59825 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 2.4261 -4.0326 1.4369 12 6 3.2185 -5.3437 1.4303 13 7 2.4410 -6.3658 0.7167 14 6 2.1728 -7.5531 1.2956 15 8 2.5747 -7.7859 2.4159 16 6 1.3735 -8.5911 0.5508 17 1 0.4142 -8.1828 0.2329 18 6 2.1692 -9.1296 -0.6618 19 6 2.8517 -10.3514 -0.0653 20 6 3.9103 -11.1213 -0.4964 21 6 4.3475 -12.1875 0.2686 22 6 3.7193 -12.4771 1.4662 23 6 2.6558 -11.7095 1.8991 24 9 2.0487 -11.9997 3.0705 25 6 2.2066 -10.6360 1.1301 26 8 1.1847 -9.7651 1.3590 27 6 1.9618 -6.0695 -0.6403 28 6 1.1804 -4.7522 -0.6105 29 1 -0.4851 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9685 -3.5504 -0.5905 32 1 1.5154 -4.1609 2.0219 33 1 3.0339 -3.2424 1.8777 34 1 3.3956 -5.6688 2.4555 35 1 4.1724 -5.1915 0.9254 36 1 1.4984 -9.4138 -1.4726 37 1 2.9019 -8.3981 -1.0027 38 1 4.3990 -10.8918 -1.4318 39 1 5.1772 -12.7915 -0.0677 40 1 4.0616 -13.3076 2.0656 41 1 2.8122 -5.9747 -1.3155 42 1 1.3116 -6.8748 -0.9822 43 1 0.9016 -4.4716 -1.6262 44 1 0.2809 -4.8763 -0.0074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997334122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:17 Heat of formation + Delta-G solvation = -86.211593 kcal Electronic energy + Delta-G solvation = -28750.701483 eV Core-core repulsion = 24582.474940 eV Total energy + Delta-G solvation = -4168.226543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.91972 -42.67718 -40.77871 -38.86029 -38.18537 -36.24953 -34.22879 -33.43377 -32.21916 -31.24247 -30.89710 -30.20185 -26.87391 -25.71628 -24.20380 -24.12316 -23.53305 -22.83377 -21.75684 -20.46503 -19.25274 -18.92782 -18.42821 -18.30949 -17.63142 -17.19479 -16.72836 -16.68956 -16.46775 -15.96795 -15.68254 -15.49242 -15.41334 -15.27036 -14.92473 -14.58631 -14.34120 -14.10639 -14.08048 -13.87385 -13.57728 -13.39001 -13.11930 -12.88481 -12.85485 -12.77272 -12.61911 -12.57826 -12.21240 -12.18701 -12.11847 -11.93963 -11.69556 -11.41827 -10.92736 -10.86762 -9.80418 -9.76962 -9.26607 -9.00588 -7.94016 -5.21974 0.07491 0.11881 1.33980 1.47444 1.48476 1.57619 1.69633 2.10530 2.53593 2.56355 3.08260 3.22245 3.27464 3.39683 3.47985 3.80574 3.82388 3.87827 4.07842 4.11476 4.14231 4.18243 4.21647 4.34183 4.36726 4.40519 4.58640 4.64335 4.69816 4.77022 4.81294 4.85491 4.92588 4.96501 5.06047 5.11193 5.23985 5.30233 5.33436 5.45840 5.49648 5.54639 5.57677 5.99387 6.27060 6.29081 6.96911 7.34885 8.11656 8.33107 9.29646 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.002311 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.076102 B =12112.205935 C =12247.349055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.738 5.738 10 C 0.173 3.827 11 C -0.139 4.139 12 C 0.122 3.878 13 N -0.596 5.596 14 C 0.493 3.507 15 O -0.581 6.581 16 C 0.058 3.942 17 H 0.174 0.826 18 C -0.089 4.089 19 C -0.152 4.152 20 C -0.074 4.074 21 C -0.109 4.109 22 C -0.124 4.124 23 C 0.045 3.955 24 F -0.157 7.157 25 C 0.039 3.961 26 O -0.299 6.299 27 C 0.109 3.891 28 C -0.134 4.134 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 -26.909 -7.855 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.329 5.329 14 C 0.281 3.719 15 O -0.461 6.461 16 C -0.001 4.001 17 H 0.191 0.809 18 C -0.125 4.125 19 C -0.153 4.153 20 C -0.092 4.092 21 C -0.127 4.127 22 C -0.143 4.143 23 C 0.025 3.975 24 F -0.136 7.136 25 C -0.006 4.006 26 O -0.212 6.212 27 C -0.012 4.012 28 C -0.173 4.173 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.188 0.812 39 H 0.195 0.805 40 H 0.181 0.819 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.108 0.892 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.038 -26.928 -7.093 29.277 hybrid contribution -0.644 1.587 1.237 2.112 sum 8.394 -25.341 -5.856 27.330 Atomic orbital electron populations 1.69810 1.06586 1.25814 1.59952 1.25517 0.96304 1.00989 1.04193 0.85152 0.78413 0.80256 0.76443 1.18885 1.22065 1.22702 1.19649 0.91440 0.85175 1.40211 0.90461 1.42675 1.05453 1.01069 1.88450 1.20450 0.94933 0.85152 0.93010 1.22478 0.99194 0.95827 1.00498 1.21519 0.94410 0.86485 0.97719 1.48207 1.53284 1.13685 1.17726 1.21461 0.80307 0.83692 0.86445 1.90708 1.54345 1.79693 1.21308 1.23701 1.02727 0.84148 0.89533 0.80905 1.22148 0.99876 0.94270 0.96247 1.21143 0.99359 1.00749 0.94022 1.20892 0.93634 0.93359 1.01313 1.21436 1.00734 0.97664 0.92834 1.21292 0.93683 1.00137 0.99177 1.17655 0.97584 0.99034 0.83225 1.91438 1.82845 1.93205 1.46105 1.19952 0.91511 0.93454 0.95721 1.86976 1.41094 1.26734 1.66430 1.22178 1.00223 0.97421 0.81428 1.22125 0.98463 0.94404 1.02270 0.94194 0.79708 0.92695 0.94583 0.92517 0.91455 0.89310 0.83448 0.85910 0.81153 0.80476 0.81934 0.87733 0.86252 0.89237 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 2 C -0.08 -4.37 5.50 84.87 0.47 -3.91 16 3 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 7 C -0.23 -12.35 9.93 84.04 0.83 -11.52 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -34.97 5.12 -322.76 -1.65 -36.62 16 10 C 0.17 6.00 2.73 45.03 0.12 6.12 16 11 C -0.14 -4.77 5.67 30.68 0.17 -4.60 16 12 C 0.12 3.42 6.43 86.36 0.56 3.97 16 13 N -0.60 -14.15 2.97 -818.91 -2.43 -16.58 16 14 C 0.49 13.61 6.98 87.66 0.61 14.23 16 15 O -0.58 -22.42 15.90 15.21 0.24 -22.18 16 16 C 0.06 1.15 3.09 30.43 0.09 1.25 16 17 H 0.17 2.31 7.51 -2.39 -0.02 2.29 16 18 C -0.09 -1.01 5.58 30.89 0.17 -0.84 16 19 C -0.15 -2.58 6.27 -19.37 -0.12 -2.70 16 20 C -0.07 -0.83 10.03 22.19 0.22 -0.61 16 21 C -0.11 -1.17 10.07 22.30 0.22 -0.95 16 22 C -0.12 -2.06 9.99 22.25 0.22 -1.83 16 23 C 0.04 1.14 7.32 22.54 0.16 1.31 16 24 F -0.16 -4.78 17.26 44.97 0.78 -4.00 16 25 C 0.04 1.01 6.84 22.70 0.16 1.16 16 26 O -0.30 -8.54 10.42 -77.58 -0.81 -9.35 16 27 C 0.11 1.77 5.16 86.36 0.45 2.22 16 28 C -0.13 -3.37 5.55 30.67 0.17 -3.20 16 29 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.37 19.22 7.80 -92.71 -0.72 18.49 16 31 H 0.06 1.86 8.08 -2.38 -0.02 1.84 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.17 7.01 -2.39 -0.02 2.15 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.12 0.97 6.77 -2.38 -0.02 0.96 16 38 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.12 1.05 5.20 -2.38 -0.01 1.03 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -81.64 362.42 3.27 -78.38 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.32 Total: 21.12 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.52 Total: 0.08 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -3.80 Total: -111.38 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.57 Total: -31.52 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -81.64 3.27 -78.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997334122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.836 kcal (2) G-P(sol) polarization free energy of solvation -81.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds