Wall clock time and date at job start Tue Mar 31 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47471 * 240.00021 * 3 2 1 5 5 H 1.48498 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46829 * 120.00130 * 3 2 1 7 7 C 1.38809 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99922 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49590 * 35.06583 * 10 9 7 12 12 C 1.53034 * 109.49521 * 275.00075 * 10 9 7 13 13 C 1.53046 * 109.53841 * 178.65063 * 12 10 9 14 14 C 1.53193 * 109.30809 * 61.36581 * 13 12 10 15 15 N 1.46924 * 108.77623 * 305.36422 * 14 13 12 16 16 C 1.34780 * 120.63331 * 233.58550 * 15 14 13 17 17 O 1.21275 * 119.99989 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99514 * 0.02562 * 16 15 14 19 19 H 1.08994 * 110.80960 * 58.31743 * 18 16 15 20 20 C 1.54700 * 110.75138 * 294.99562 * 18 16 15 21 21 C 1.51643 * 101.92813 * 216.36365 * 20 18 16 22 22 C 1.37751 * 132.14248 * 195.78169 * 21 20 18 23 23 C 1.38536 * 119.95903 * 179.45362 * 22 21 20 24 24 F 1.35100 * 120.14703 * 179.97438 * 23 22 21 25 25 C 1.38475 * 119.71259 * 359.90980 * 23 22 21 26 26 C 1.37935 * 120.32538 * 0.16713 * 25 23 22 27 27 C 1.38862 * 107.04595 * 15.47805 * 21 20 18 28 28 O 1.36187 * 111.22795 * 0.94053 * 27 21 20 29 29 C 1.46928 * 118.73778 * 53.86716 * 15 14 13 30 30 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99722 * 0.02562 * 9 7 2 32 32 H 1.09008 * 109.46394 * 58.63249 * 12 10 9 33 33 H 1.09000 * 109.45356 * 298.66483 * 12 10 9 34 34 H 1.08996 * 109.49556 * 301.41424 * 13 12 10 35 35 H 1.09000 * 109.49804 * 181.31829 * 13 12 10 36 36 H 1.09003 * 109.58234 * 185.57955 * 14 13 12 37 37 H 1.08992 * 109.58824 * 65.15773 * 14 13 12 38 38 H 1.09005 * 110.93739 * 98.20075 * 20 18 16 39 39 H 1.09005 * 110.93544 * 334.52404 * 20 18 16 40 40 H 1.08000 * 120.02438 * 359.43478 * 22 21 20 41 41 H 1.08000 * 119.84095 * 179.89927 * 25 23 22 42 42 H 1.07997 * 119.86683 * 180.02562 * 26 25 23 43 43 H 1.08998 * 109.59140 * 65.92229 * 29 15 14 44 44 H 1.08999 * 109.58393 * 186.35403 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9683 -3.5513 0.5898 12 6 2.4224 -4.0362 -1.4377 13 6 3.2168 -5.3443 -1.4360 14 6 2.3513 -6.4619 -0.8454 15 7 1.8770 -6.0422 0.4803 16 6 2.0774 -6.8232 1.5603 17 8 1.6806 -6.4657 2.6492 18 6 2.7946 -8.1407 1.4148 19 1 3.7913 -7.9950 0.9984 20 6 1.9731 -9.1183 0.5415 21 6 2.2483 -10.4482 1.2163 22 6 2.0653 -11.7495 0.8034 23 6 2.4219 -12.7966 1.6374 24 9 2.2437 -14.0744 1.2365 25 6 2.9632 -12.5279 2.8834 26 6 3.1450 -11.2248 3.2974 27 6 2.7845 -10.1673 2.4661 28 8 2.8651 -8.8243 2.6775 29 6 1.1745 -4.7578 0.6053 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0272 -3.2446 -1.8801 33 1 1.5108 -4.1658 -2.0211 34 1 4.1161 -5.2230 -0.8322 35 1 3.4960 -5.6017 -2.4577 36 1 2.9442 -7.3716 -0.7503 37 1 1.4976 -6.6462 -1.4975 38 1 2.3354 -9.1208 -0.4866 39 1 0.9112 -8.8752 0.5782 40 1 1.6438 -11.9535 -0.1698 41 1 3.2405 -13.3427 3.5359 42 1 3.5681 -11.0238 4.2705 43 1 0.2267 -4.8059 0.0691 44 1 0.9907 -4.5428 1.6580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000350922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:50 Heat of formation + Delta-G solvation = -62.575931 kcal Electronic energy + Delta-G solvation = -28326.099458 eV Core-core repulsion = 24158.897833 eV Total energy + Delta-G solvation = -4167.201624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.19895 -41.82787 -39.86205 -37.77392 -37.08559 -34.71281 -33.32369 -32.25360 -31.37883 -30.27918 -30.00654 -28.21456 -25.89765 -24.46731 -23.62760 -22.77794 -22.38347 -22.06582 -20.35247 -19.22263 -18.20523 -17.64209 -17.52449 -17.33084 -17.19127 -16.10461 -15.87286 -15.62654 -14.91952 -14.67300 -14.55572 -14.44767 -14.21742 -13.92044 -13.77543 -13.59672 -13.43224 -13.37238 -13.10275 -12.97712 -12.92514 -12.65814 -12.41982 -12.15705 -11.45722 -11.21248 -11.12000 -11.04164 -10.93122 -10.72129 -10.50000 -10.43805 -10.15553 -9.83685 -9.68398 -9.51076 -8.95592 -8.57181 -8.45330 -7.03953 -5.81490 -3.11599 0.65613 0.74636 2.29704 2.48053 2.99875 3.22096 3.41531 3.46369 3.47066 3.65409 3.91559 4.06570 4.25815 4.40627 4.51289 4.55510 4.61088 4.74779 4.77370 4.99097 5.01956 5.13602 5.18365 5.25409 5.39607 5.42777 5.46401 5.57164 5.62363 5.66995 5.69873 5.70717 5.84058 5.92903 6.05904 6.10392 6.14400 6.30386 6.45140 6.55039 6.69180 6.79521 6.96670 7.33830 7.64967 8.06600 8.36247 9.47511 10.01872 10.36753 11.40777 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.032568 B = 0.002175 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.544327 B =12867.536292 C =13229.381047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.138 4.138 13 C -0.134 4.134 14 C 0.101 3.899 15 N -0.598 5.598 16 C 0.517 3.483 17 O -0.515 6.515 18 C 0.066 3.934 19 H 0.116 0.884 20 C -0.100 4.100 21 C -0.147 4.147 22 C -0.100 4.100 23 C 0.066 3.934 24 F -0.138 7.138 25 C -0.115 4.115 26 C -0.108 4.108 27 C 0.103 3.897 28 O -0.269 6.269 29 C 0.107 3.893 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.069 0.931 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.587 -26.487 -1.593 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.179 4.179 13 C -0.173 4.173 14 C -0.021 4.021 15 N -0.333 5.333 16 C 0.302 3.698 17 O -0.389 6.389 18 C 0.006 3.994 19 H 0.134 0.866 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.118 4.118 23 C 0.047 3.953 24 F -0.117 7.117 25 C -0.134 4.134 26 C -0.127 4.127 27 C 0.057 3.943 28 O -0.181 6.181 29 C -0.015 4.015 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.087 0.913 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.483 -26.021 -0.779 26.827 hybrid contribution 0.129 0.734 -0.394 0.843 sum 6.612 -25.286 -1.173 26.163 Atomic orbital electron populations 1.69646 1.05112 1.25924 1.57227 1.24756 0.95536 0.97745 1.02706 0.86256 0.78535 0.83446 0.77864 1.21244 1.21655 1.21200 1.19146 0.90936 0.83847 1.43290 0.91188 1.42297 1.05813 0.99477 1.88582 1.20562 0.94603 0.85907 0.93175 0.93087 1.22301 0.99658 0.95226 1.00676 1.21953 0.98810 0.95964 1.00605 1.21965 0.98648 0.97743 0.83791 1.48014 1.57356 1.20684 1.07252 1.19847 0.80421 0.84857 0.84688 1.90771 1.49792 1.72749 1.25602 1.23233 1.00820 0.92148 0.83166 0.86639 1.21898 1.02480 0.89256 1.00052 1.20495 1.03244 0.94516 0.96586 1.20182 1.01224 0.89884 1.00546 1.17361 1.04537 0.78754 0.94642 1.91505 1.93589 1.35712 1.90885 1.20863 1.00280 0.97011 0.95206 1.20095 1.02847 0.88875 1.00842 1.19657 0.95756 0.84595 0.94331 1.87006 1.88542 1.13704 1.28848 1.22177 0.94930 0.80766 1.03632 0.93357 0.78156 0.91398 0.92355 0.91703 0.91089 0.90431 0.90754 0.87400 0.87930 0.84235 0.83723 0.84035 0.91263 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.45 5.13 -53.09 -0.27 -17.73 16 10 C 0.17 3.19 2.93 -67.59 -0.20 2.99 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.14 -2.17 5.46 -26.69 -0.15 -2.31 16 13 C -0.13 -1.48 6.08 -26.61 -0.16 -1.65 16 14 C 0.10 0.96 5.73 -3.71 -0.02 0.94 16 15 N -0.60 -7.96 2.97 -172.50 -0.51 -8.48 16 16 C 0.52 7.49 7.07 -10.98 -0.08 7.42 16 17 O -0.51 -9.95 15.98 -13.50 -0.22 -10.16 16 18 C 0.07 0.71 3.05 -26.99 -0.08 0.63 16 19 H 0.12 0.96 7.64 -51.93 -0.40 0.56 16 20 C -0.10 -0.80 5.55 -26.52 -0.15 -0.95 16 21 C -0.15 -1.33 6.27 -104.10 -0.65 -1.99 16 22 C -0.10 -0.80 10.02 -39.65 -0.40 -1.20 16 23 C 0.07 0.56 7.31 -39.38 -0.29 0.28 16 24 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 25 C -0.11 -0.87 10.00 -39.60 -0.40 -1.27 16 26 C -0.11 -0.93 10.06 -39.31 -0.40 -1.33 16 27 C 0.10 1.09 7.04 -38.97 -0.27 0.82 16 28 O -0.27 -3.52 10.39 -39.40 -0.41 -3.92 16 29 C 0.11 1.79 5.93 -3.48 -0.02 1.77 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.50 4.52 -51.93 -0.23 0.27 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 0.53 6.88 -51.93 -0.36 0.18 16 39 H 0.10 0.88 7.92 -51.93 -0.41 0.47 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.83 7.00 -51.93 -0.36 1.47 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -33.31 362.61 -9.56 -42.87 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.85 Total: 5.97 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.50 Total: -2.95 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.06 Total: -53.16 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.63 Total: -14.09 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.31 -9.56 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000350922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.705 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds