Wall clock time and date at job start Tue Mar 31 2020 18:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47471 * 240.00021 * 3 2 1 5 5 H 1.48498 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46829 * 120.00130 * 3 2 1 7 7 C 1.38809 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99922 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49590 * 35.06583 * 10 9 7 12 12 C 1.53034 * 109.49521 * 275.00075 * 10 9 7 13 13 C 1.53046 * 109.53841 * 178.65063 * 12 10 9 14 14 C 1.53193 * 109.30809 * 61.36581 * 13 12 10 15 15 N 1.46924 * 108.77623 * 305.36422 * 14 13 12 16 16 C 1.34780 * 120.63331 * 233.58550 * 15 14 13 17 17 O 1.21275 * 119.99989 * 180.02562 * 16 15 14 18 18 C 1.50706 * 119.99514 * 0.02562 * 16 15 14 19 19 H 1.08994 * 110.80960 * 58.31743 * 18 16 15 20 20 C 1.54700 * 110.75138 * 294.99562 * 18 16 15 21 21 C 1.51643 * 101.92813 * 216.36365 * 20 18 16 22 22 C 1.37751 * 132.14248 * 195.78169 * 21 20 18 23 23 C 1.38536 * 119.95903 * 179.45362 * 22 21 20 24 24 F 1.35100 * 120.14703 * 179.97438 * 23 22 21 25 25 C 1.38475 * 119.71259 * 359.90980 * 23 22 21 26 26 C 1.37935 * 120.32538 * 0.16713 * 25 23 22 27 27 C 1.38862 * 107.04595 * 15.47805 * 21 20 18 28 28 O 1.36187 * 111.22795 * 0.94053 * 27 21 20 29 29 C 1.46928 * 118.73778 * 53.86716 * 15 14 13 30 30 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99722 * 0.02562 * 9 7 2 32 32 H 1.09008 * 109.46394 * 58.63249 * 12 10 9 33 33 H 1.09000 * 109.45356 * 298.66483 * 12 10 9 34 34 H 1.08996 * 109.49556 * 301.41424 * 13 12 10 35 35 H 1.09000 * 109.49804 * 181.31829 * 13 12 10 36 36 H 1.09003 * 109.58234 * 185.57955 * 14 13 12 37 37 H 1.08992 * 109.58824 * 65.15773 * 14 13 12 38 38 H 1.09005 * 110.93739 * 98.20075 * 20 18 16 39 39 H 1.09005 * 110.93544 * 334.52404 * 20 18 16 40 40 H 1.08000 * 120.02438 * 359.43478 * 22 21 20 41 41 H 1.08000 * 119.84095 * 179.89927 * 25 23 22 42 42 H 1.07997 * 119.86683 * 180.02562 * 26 25 23 43 43 H 1.08998 * 109.59140 * 65.92229 * 29 15 14 44 44 H 1.08999 * 109.58393 * 186.35403 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9683 -3.5513 0.5898 12 6 2.4224 -4.0362 -1.4377 13 6 3.2168 -5.3443 -1.4360 14 6 2.3513 -6.4619 -0.8454 15 7 1.8770 -6.0422 0.4803 16 6 2.0774 -6.8232 1.5603 17 8 1.6806 -6.4657 2.6492 18 6 2.7946 -8.1407 1.4148 19 1 3.7913 -7.9950 0.9984 20 6 1.9731 -9.1183 0.5415 21 6 2.2483 -10.4482 1.2163 22 6 2.0653 -11.7495 0.8034 23 6 2.4219 -12.7966 1.6374 24 9 2.2437 -14.0744 1.2365 25 6 2.9632 -12.5279 2.8834 26 6 3.1450 -11.2248 3.2974 27 6 2.7845 -10.1673 2.4661 28 8 2.8651 -8.8243 2.6775 29 6 1.1745 -4.7578 0.6053 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0272 -3.2446 -1.8801 33 1 1.5108 -4.1658 -2.0211 34 1 4.1161 -5.2230 -0.8322 35 1 3.4960 -5.6017 -2.4577 36 1 2.9442 -7.3716 -0.7503 37 1 1.4976 -6.6462 -1.4975 38 1 2.3354 -9.1208 -0.4866 39 1 0.9112 -8.8752 0.5782 40 1 1.6438 -11.9535 -0.1698 41 1 3.2405 -13.3427 3.5359 42 1 3.5681 -11.0238 4.2705 43 1 0.2267 -4.8059 0.0691 44 1 0.9907 -4.5428 1.6580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000350922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:49 Heat of formation + Delta-G solvation = -83.260063 kcal Electronic energy + Delta-G solvation = -28326.996389 eV Core-core repulsion = 24158.897833 eV Total energy + Delta-G solvation = -4168.098555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85064 -42.62247 -40.93780 -38.82700 -38.05981 -36.31122 -34.34288 -33.54532 -32.77967 -31.24431 -30.71455 -29.67215 -26.90145 -25.96440 -24.90306 -23.49439 -23.42775 -22.90010 -21.64221 -20.39303 -19.22620 -18.97271 -18.32958 -18.24871 -18.16697 -17.24136 -16.74948 -16.55519 -16.42461 -15.76130 -15.70511 -15.31999 -15.26680 -15.23723 -14.97595 -14.71631 -14.42722 -14.16258 -14.08368 -14.01013 -13.91207 -13.60044 -13.51802 -13.06881 -12.87664 -12.84873 -12.36704 -12.19232 -12.18448 -12.10800 -11.83639 -11.82026 -11.70929 -11.60393 -10.91180 -10.90874 -10.09916 -9.77236 -9.14764 -9.03834 -7.96473 -5.25903 0.02893 0.11960 1.30086 1.44434 1.47109 1.48893 1.54898 2.24217 2.47538 2.55836 2.94072 3.21656 3.30393 3.36844 3.58788 3.75232 3.79149 3.88275 4.00451 4.05866 4.06912 4.11527 4.20142 4.24990 4.36761 4.39983 4.53853 4.61849 4.67240 4.75785 4.80384 4.84312 4.88135 5.03585 5.06976 5.08944 5.17160 5.21668 5.37100 5.42127 5.47238 5.52876 5.60650 5.99629 6.25136 6.27889 6.96168 7.31211 8.04433 8.28040 9.26503 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.032568 B = 0.002175 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.544327 B =12867.536292 C =13229.381047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.129 4.129 13 C -0.126 4.126 14 C 0.096 3.904 15 N -0.592 5.592 16 C 0.512 3.488 17 O -0.577 6.577 18 C 0.069 3.931 19 H 0.148 0.852 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.097 4.097 23 C 0.057 3.943 24 F -0.142 7.142 25 C -0.111 4.111 26 C -0.114 4.114 27 C 0.073 3.927 28 O -0.304 6.304 29 C 0.119 3.881 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.097 0.903 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.150 0.850 43 H 0.077 0.923 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -29.134 -3.748 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.057 3.943 11 H 0.049 0.951 12 C -0.169 4.169 13 C -0.165 4.165 14 C -0.025 4.025 15 N -0.325 5.325 16 C 0.299 3.701 17 O -0.456 6.456 18 C 0.010 3.990 19 H 0.165 0.835 20 C -0.128 4.128 21 C -0.148 4.148 22 C -0.115 4.115 23 C 0.038 3.962 24 F -0.121 7.121 25 C -0.129 4.129 26 C -0.132 4.132 27 C 0.028 3.972 28 O -0.217 6.217 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.169 0.831 39 H 0.115 0.885 40 H 0.181 0.819 41 H 0.185 0.815 42 H 0.168 0.832 43 H 0.095 0.905 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.116 -28.733 -2.982 30.006 hybrid contribution -0.334 1.444 0.325 1.517 sum 7.781 -27.289 -2.656 28.501 Atomic orbital electron populations 1.69802 1.06536 1.26164 1.59320 1.25555 0.96400 1.01049 1.03697 0.85235 0.77231 0.79280 0.78159 1.20018 1.22162 1.20828 1.19494 0.91255 0.85055 1.41303 0.90892 1.42486 1.05489 1.00768 1.88871 1.20742 0.93517 0.84644 0.95387 0.95132 1.22085 1.00159 0.97473 0.97191 1.21925 0.98014 0.93478 1.03035 1.22374 0.99934 0.98582 0.81570 1.48042 1.56533 1.19003 1.08954 1.20657 0.79565 0.86075 0.83759 1.90741 1.52395 1.74391 1.28050 1.23347 1.02104 0.90163 0.83387 0.83507 1.21968 1.01882 0.87519 1.01456 1.20583 1.02984 0.95222 0.96004 1.20391 1.00537 0.89188 1.01403 1.17572 1.04734 0.78767 0.95114 1.91499 1.93644 1.36000 1.90943 1.21096 0.99393 0.97135 0.95305 1.20318 1.02778 0.88965 1.01182 1.19981 0.97534 0.83915 0.95802 1.86959 1.89149 1.15203 1.30418 1.21724 0.95246 0.82234 1.01235 0.93983 0.79447 0.93622 0.92179 0.91895 0.87402 0.86125 0.88379 0.83104 0.88470 0.81924 0.81529 0.83186 0.90500 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.24 -13.27 9.93 84.03 0.83 -12.43 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.88 5.13 -321.88 -1.65 -38.53 16 10 C 0.17 6.41 2.93 45.21 0.13 6.54 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.13 -3.89 5.46 30.62 0.17 -3.72 16 13 C -0.13 -2.31 6.08 30.67 0.19 -2.12 16 14 C 0.10 1.40 5.73 86.36 0.50 1.89 16 15 N -0.59 -14.95 2.97 -818.07 -2.43 -17.38 16 16 C 0.51 14.60 7.07 87.66 0.62 15.22 16 17 O -0.58 -23.38 15.98 15.21 0.24 -23.14 16 18 C 0.07 1.33 3.05 30.43 0.09 1.42 16 19 H 0.15 1.86 7.64 -2.39 -0.02 1.84 16 20 C -0.09 -1.13 5.55 30.73 0.17 -0.96 16 21 C -0.15 -2.24 6.27 -19.53 -0.12 -2.36 16 22 C -0.10 -1.25 10.02 22.23 0.22 -1.02 16 23 C 0.06 0.83 7.31 22.40 0.16 1.00 16 24 F -0.14 -2.24 17.27 44.97 0.78 -1.47 16 25 C -0.11 -1.45 10.00 22.25 0.22 -1.23 16 26 C -0.11 -1.83 10.06 22.45 0.23 -1.60 16 27 C 0.07 1.45 7.04 22.67 0.16 1.61 16 28 O -0.30 -7.80 10.39 -77.46 -0.80 -8.60 16 29 C 0.12 4.09 5.93 86.51 0.51 4.60 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.37 20.06 7.80 -92.71 -0.72 19.33 16 32 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 0.79 4.52 -2.39 -0.01 0.78 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.15 0.52 6.88 -2.38 -0.02 0.50 16 39 H 0.10 1.36 7.92 -2.38 -0.02 1.34 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.06 2.43 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -78.17 362.61 3.32 -74.86 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.32 Total: 21.95 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.55 Total: 3.01 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.79 Total: -114.88 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.56 Total: -31.74 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.17 3.32 -74.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000350922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.403 kcal (2) G-P(sol) polarization free energy of solvation -78.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds