Wall clock time and date at job start Tue Mar 31 2020 18:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48492 * 109.47196 * 270.00239 * 3 2 1 5 5 H 1.48508 * 109.46934 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46906 * 149.99561 * 3 2 1 7 7 C 1.38815 * 119.99401 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00441 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99448 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49899 * 34.93204 * 10 9 7 12 12 C 1.53109 * 109.51761 * 274.87037 * 10 9 7 13 13 C 1.53036 * 109.50477 * 178.68499 * 12 10 9 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 12 10 15 15 N 1.46931 * 108.77858 * 305.34763 * 14 13 12 16 16 C 1.34772 * 120.63173 * 233.63340 * 15 14 13 17 17 O 1.21277 * 119.99811 * 179.97438 * 16 15 14 18 18 C 1.50704 * 120.00006 * 359.97438 * 16 15 14 19 19 H 1.08992 * 110.66579 * 301.78454 * 18 16 15 20 20 C 1.54700 * 110.74826 * 65.00386 * 18 16 15 21 21 C 1.51644 * 101.93684 * 143.61674 * 20 18 16 22 22 C 1.37754 * 132.15726 * 164.61677 * 21 20 18 23 23 C 1.38535 * 119.96261 * 180.37217 * 22 21 20 24 24 F 1.35101 * 120.13909 * 180.02562 * 23 22 21 25 25 C 1.38468 * 119.71632 * 359.97154 * 23 22 21 26 26 C 1.37934 * 120.32308 * 359.84868 * 25 23 22 27 27 C 1.38866 * 107.04351 * 344.61252 * 21 20 18 28 28 O 1.36195 * 111.22818 * 358.92293 * 27 21 20 29 29 C 1.46925 * 118.73466 * 53.60925 * 15 14 13 30 30 H 0.96997 * 119.99305 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00223 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.50059 * 58.65437 * 12 10 9 33 33 H 1.09003 * 109.44365 * 298.68113 * 12 10 9 34 34 H 1.09002 * 109.49886 * 301.37799 * 13 12 10 35 35 H 1.09000 * 109.49395 * 181.31276 * 13 12 10 36 36 H 1.09004 * 109.58908 * 65.13475 * 14 13 12 37 37 H 1.09003 * 109.58748 * 185.41538 * 14 13 12 38 38 H 1.09006 * 110.93648 * 261.77451 * 20 18 16 39 39 H 1.09003 * 110.94215 * 25.45340 * 20 18 16 40 40 H 1.08007 * 120.01481 * 0.32673 * 22 21 20 41 41 H 1.07999 * 119.83868 * 179.88292 * 25 23 22 42 42 H 1.07995 * 119.86306 * 179.97438 * 26 25 23 43 43 H 1.08995 * 109.58986 * 66.17814 * 29 15 14 44 44 H 1.09003 * 109.58612 * 186.60908 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 1 3.5647 -3.2071 -0.5887 12 6 4.2611 -2.9756 1.4378 13 6 4.9975 -4.3172 1.4348 14 6 6.3968 -4.1264 0.8413 15 7 6.2678 -3.5067 -0.4846 16 6 6.8411 -4.0718 -1.5655 17 8 6.7269 -3.5506 -2.6546 18 6 7.6240 -5.3513 -1.4208 19 1 8.4431 -5.2232 -0.7131 20 6 6.7000 -6.5130 -0.9851 21 6 7.2893 -7.6849 -1.7460 22 6 7.1312 -9.0469 -1.6134 23 6 7.8118 -9.9079 -2.4588 24 9 7.6589 -11.2443 -2.3322 25 6 8.6484 -9.3930 -3.4346 26 6 8.8039 -8.0291 -3.5698 27 6 8.1202 -7.1575 -2.7257 28 8 8.1137 -5.7959 -2.6973 29 6 5.5014 -2.2594 -0.6098 30 1 -0.4849 0.8401 0.0004 31 1 3.8647 -0.3622 0.0004 32 1 3.2743 -3.1039 1.8826 33 1 4.8300 -2.2504 2.0198 34 1 4.4418 -5.0359 0.8325 35 1 5.0830 -4.6875 2.4564 36 1 6.9845 -3.4786 1.4918 37 1 6.8893 -5.0944 0.7482 38 1 6.7611 -6.6768 0.0909 39 1 5.6704 -6.3278 -1.2915 40 1 6.4776 -9.4432 -0.8503 41 1 9.1813 -10.0625 -4.0935 42 1 9.4586 -7.6356 -4.3332 43 1 6.0159 -1.4594 -0.0776 44 1 5.4020 -1.9957 -1.6627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000350923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:53 Heat of formation + Delta-G solvation = -56.908190 kcal Electronic energy + Delta-G solvation = -28578.903422 eV Core-core repulsion = 24411.947569 eV Total energy + Delta-G solvation = -4166.955852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.18435 -41.85792 -39.93963 -37.83172 -37.15815 -34.88702 -33.32288 -32.31075 -31.53598 -30.40702 -30.03698 -28.66360 -25.97050 -24.48381 -23.52764 -22.75662 -22.32179 -22.08809 -20.43616 -19.28554 -18.24780 -17.76855 -17.66735 -17.50332 -17.28552 -16.12776 -15.85939 -15.58393 -15.13378 -14.76037 -14.66345 -14.43659 -14.21692 -14.00354 -13.81022 -13.72807 -13.38304 -13.34239 -13.13383 -13.09237 -12.84009 -12.75391 -12.53347 -12.18852 -11.50109 -11.42621 -11.21153 -11.14809 -11.06113 -10.77321 -10.60039 -10.52107 -10.15308 -9.85596 -9.64674 -9.49937 -8.99774 -8.66317 -8.45657 -7.35937 -5.82474 -3.19725 0.66276 0.75245 2.27708 2.36707 3.00166 3.19032 3.33978 3.37551 3.42850 3.65001 3.90019 4.04771 4.23936 4.39383 4.48643 4.54276 4.59695 4.68467 4.76031 4.93400 4.99901 5.09388 5.13872 5.25527 5.27080 5.36296 5.39705 5.43659 5.57253 5.60177 5.63345 5.70150 5.78267 5.84121 5.92148 5.98823 6.10764 6.20109 6.33215 6.42008 6.66494 6.70160 6.85168 7.24872 7.90972 7.99648 8.35664 9.12815 9.85177 10.03350 11.35457 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002460 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.980824 B =11381.244343 C =11696.946597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.138 4.138 13 C -0.134 4.134 14 C 0.097 3.903 15 N -0.598 5.598 16 C 0.517 3.483 17 O -0.514 6.514 18 C 0.067 3.933 19 H 0.115 0.885 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.099 4.099 23 C 0.068 3.932 24 F -0.138 7.138 25 C -0.115 4.115 26 C -0.108 4.108 27 C 0.101 3.899 28 O -0.269 6.269 29 C 0.104 3.896 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.067 0.933 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.724 -18.949 0.894 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.179 4.179 13 C -0.173 4.173 14 C -0.026 4.026 15 N -0.333 5.333 16 C 0.303 3.697 17 O -0.389 6.389 18 C 0.007 3.993 19 H 0.133 0.867 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.118 4.118 23 C 0.048 3.952 24 F -0.116 7.116 25 C -0.134 4.134 26 C -0.126 4.126 27 C 0.055 3.945 28 O -0.181 6.181 29 C -0.018 4.018 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.086 0.914 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.452 -18.577 0.111 27.629 hybrid contribution 0.383 0.973 0.335 1.098 sum 20.835 -17.604 0.446 27.280 Atomic orbital electron populations 1.69703 1.05118 1.25942 1.57108 1.24677 0.95238 0.97263 1.01752 0.86556 0.79154 0.84923 0.77904 1.20945 1.21700 1.20304 1.19014 0.80215 0.94753 1.43538 0.89154 1.42662 1.04124 1.01654 1.90266 1.20461 0.89873 0.89810 0.93604 0.92234 1.22269 1.00753 0.94658 1.00188 1.21939 0.94925 0.99601 1.00790 1.22024 0.98708 0.98170 0.83657 1.47954 1.52119 1.25925 1.07318 1.19886 0.80118 0.85130 0.84612 1.90771 1.59448 1.63030 1.25607 1.23203 0.97103 0.93947 0.85057 0.86735 1.21936 1.00671 0.89506 1.01695 1.20492 0.99891 0.94074 1.00209 1.20201 1.00435 0.91103 1.00061 1.17363 1.01374 0.77418 0.99009 1.91508 1.94690 1.29959 1.95489 1.20859 0.99206 0.95007 0.98343 1.20078 1.01010 0.90623 1.00919 1.19644 0.95135 0.83587 0.96126 1.86998 1.81175 1.16398 1.33570 1.22081 0.92132 0.83968 1.03651 0.92962 0.80545 0.90896 0.92452 0.91509 0.90895 0.90831 0.90075 0.87263 0.87678 0.84153 0.83720 0.84078 0.91449 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.71 10.41 -15.06 -0.16 -6.87 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -16.84 4.93 -53.27 -0.26 -17.10 16 10 C 0.17 3.10 2.92 -67.77 -0.20 2.90 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.14 -2.06 5.47 -26.66 -0.15 -2.21 16 13 C -0.13 -1.37 6.08 -26.62 -0.16 -1.53 16 14 C 0.10 0.86 6.00 -3.71 -0.02 0.83 16 15 N -0.60 -7.54 2.97 -172.77 -0.51 -8.05 16 16 C 0.52 7.19 7.07 -10.99 -0.08 7.11 16 17 O -0.51 -9.59 15.98 -13.50 -0.22 -9.81 16 18 C 0.07 0.69 3.07 -26.99 -0.08 0.60 16 19 H 0.12 0.84 7.89 -51.93 -0.41 0.43 16 20 C -0.10 -0.84 5.54 -26.52 -0.15 -0.98 16 21 C -0.15 -1.34 6.27 -104.10 -0.65 -2.00 16 22 C -0.10 -0.83 10.01 -39.65 -0.40 -1.22 16 23 C 0.07 0.59 7.31 -39.39 -0.29 0.30 16 24 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 25 C -0.12 -0.88 10.00 -39.61 -0.40 -1.28 16 26 C -0.11 -0.92 10.06 -39.31 -0.40 -1.32 16 27 C 0.10 1.07 7.03 -38.97 -0.27 0.79 16 28 O -0.27 -3.42 10.39 -39.42 -0.41 -3.83 16 29 C 0.10 1.63 5.90 -3.71 -0.02 1.60 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.48 4.03 -51.93 -0.21 0.27 16 38 H 0.11 0.56 6.59 -51.93 -0.34 0.22 16 39 H 0.10 0.99 7.92 -51.93 -0.41 0.58 16 40 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.72 7.01 -51.93 -0.36 1.35 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -34.26 359.21 -9.19 -43.45 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.78 Total: 5.40 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.51 Total: -3.16 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.00 Total: -53.21 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.63 Total: -13.64 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.26 -9.19 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000350923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.460 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds