Wall clock time and date at job start Tue Mar 31 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48492 * 109.47196 * 270.00239 * 3 2 1 5 5 H 1.48508 * 109.46934 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46906 * 149.99561 * 3 2 1 7 7 C 1.38815 * 119.99401 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00441 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99448 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49899 * 34.93204 * 10 9 7 12 12 C 1.53109 * 109.51761 * 274.87037 * 10 9 7 13 13 C 1.53036 * 109.50477 * 178.68499 * 12 10 9 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 12 10 15 15 N 1.46931 * 108.77858 * 305.34763 * 14 13 12 16 16 C 1.34772 * 120.63173 * 233.63340 * 15 14 13 17 17 O 1.21277 * 119.99811 * 179.97438 * 16 15 14 18 18 C 1.50704 * 120.00006 * 359.97438 * 16 15 14 19 19 H 1.08992 * 110.66579 * 301.78454 * 18 16 15 20 20 C 1.54700 * 110.74826 * 65.00386 * 18 16 15 21 21 C 1.51644 * 101.93684 * 143.61674 * 20 18 16 22 22 C 1.37754 * 132.15726 * 164.61677 * 21 20 18 23 23 C 1.38535 * 119.96261 * 180.37217 * 22 21 20 24 24 F 1.35101 * 120.13909 * 180.02562 * 23 22 21 25 25 C 1.38468 * 119.71632 * 359.97154 * 23 22 21 26 26 C 1.37934 * 120.32308 * 359.84868 * 25 23 22 27 27 C 1.38866 * 107.04351 * 344.61252 * 21 20 18 28 28 O 1.36195 * 111.22818 * 358.92293 * 27 21 20 29 29 C 1.46925 * 118.73466 * 53.60925 * 15 14 13 30 30 H 0.96997 * 119.99305 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00223 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.50059 * 58.65437 * 12 10 9 33 33 H 1.09003 * 109.44365 * 298.68113 * 12 10 9 34 34 H 1.09002 * 109.49886 * 301.37799 * 13 12 10 35 35 H 1.09000 * 109.49395 * 181.31276 * 13 12 10 36 36 H 1.09004 * 109.58908 * 65.13475 * 14 13 12 37 37 H 1.09003 * 109.58748 * 185.41538 * 14 13 12 38 38 H 1.09006 * 110.93648 * 261.77451 * 20 18 16 39 39 H 1.09003 * 110.94215 * 25.45340 * 20 18 16 40 40 H 1.08007 * 120.01481 * 0.32673 * 22 21 20 41 41 H 1.07999 * 119.83868 * 179.88292 * 25 23 22 42 42 H 1.07995 * 119.86306 * 179.97438 * 26 25 23 43 43 H 1.08995 * 109.58986 * 66.17814 * 29 15 14 44 44 H 1.09003 * 109.58612 * 186.60908 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 1 3.5647 -3.2071 -0.5887 12 6 4.2611 -2.9756 1.4378 13 6 4.9975 -4.3172 1.4348 14 6 6.3968 -4.1264 0.8413 15 7 6.2678 -3.5067 -0.4846 16 6 6.8411 -4.0718 -1.5655 17 8 6.7269 -3.5506 -2.6546 18 6 7.6240 -5.3513 -1.4208 19 1 8.4431 -5.2232 -0.7131 20 6 6.7000 -6.5130 -0.9851 21 6 7.2893 -7.6849 -1.7460 22 6 7.1312 -9.0469 -1.6134 23 6 7.8118 -9.9079 -2.4588 24 9 7.6589 -11.2443 -2.3322 25 6 8.6484 -9.3930 -3.4346 26 6 8.8039 -8.0291 -3.5698 27 6 8.1202 -7.1575 -2.7257 28 8 8.1137 -5.7959 -2.6973 29 6 5.5014 -2.2594 -0.6098 30 1 -0.4849 0.8401 0.0004 31 1 3.8647 -0.3622 0.0004 32 1 3.2743 -3.1039 1.8826 33 1 4.8300 -2.2504 2.0198 34 1 4.4418 -5.0359 0.8325 35 1 5.0830 -4.6875 2.4564 36 1 6.9845 -3.4786 1.4918 37 1 6.8893 -5.0944 0.7482 38 1 6.7611 -6.6768 0.0909 39 1 5.6704 -6.3278 -1.2915 40 1 6.4776 -9.4432 -0.8503 41 1 9.1813 -10.0625 -4.0935 42 1 9.4586 -7.6356 -4.3332 43 1 6.0159 -1.4594 -0.0776 44 1 5.4020 -1.9957 -1.6627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000350923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:52 Heat of formation + Delta-G solvation = -78.942590 kcal Electronic energy + Delta-G solvation = -28579.858905 eV Core-core repulsion = 24411.947569 eV Total energy + Delta-G solvation = -4167.911336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.85869 -42.64130 -40.96285 -38.88941 -38.07669 -36.43835 -34.34874 -33.64906 -32.96362 -31.44117 -30.73235 -29.96505 -26.93902 -25.79275 -24.82370 -23.45429 -23.37942 -22.98329 -21.74543 -20.49148 -19.56672 -19.04795 -18.40263 -18.27309 -18.10887 -17.20860 -16.70744 -16.57410 -16.41281 -16.18811 -15.48363 -15.43654 -15.34816 -15.19746 -15.00232 -14.66785 -14.45485 -14.18127 -14.10711 -14.05402 -14.01693 -13.87472 -13.52892 -13.17885 -12.98451 -12.86087 -12.50899 -12.22693 -12.13541 -11.92559 -11.83898 -11.83333 -11.76148 -11.63225 -10.96848 -10.93134 -10.10820 -9.80097 -9.33460 -9.15497 -8.04553 -5.39177 0.02114 0.11160 1.32262 1.35937 1.39227 1.41869 1.47665 2.25328 2.46272 2.46904 2.93278 3.20349 3.26335 3.30068 3.55022 3.57844 3.77171 3.82236 3.97183 4.00796 4.04673 4.08742 4.15072 4.19311 4.34152 4.38321 4.49919 4.61509 4.64633 4.72291 4.79097 4.81004 4.89204 5.02957 5.04020 5.08304 5.15822 5.20511 5.36390 5.41080 5.50106 5.55044 5.74737 5.98466 6.18485 6.25871 6.94435 7.04737 7.78793 7.97935 9.16775 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002460 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.980824 B =11381.244343 C =11696.946597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.228 4.228 8 H 0.055 0.945 9 N -0.750 5.750 10 C 0.169 3.831 11 H 0.031 0.969 12 C -0.131 4.131 13 C -0.126 4.126 14 C 0.094 3.906 15 N -0.593 5.593 16 C 0.512 3.488 17 O -0.575 6.575 18 C 0.070 3.930 19 H 0.155 0.845 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.099 4.099 23 C 0.057 3.943 24 F -0.143 7.143 25 C -0.110 4.110 26 C -0.112 4.112 27 C 0.075 3.925 28 O -0.301 6.301 29 C 0.114 3.886 30 H 0.258 0.742 31 H 0.366 0.634 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.974 -20.344 2.832 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.782 3.218 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.359 4.359 8 H 0.073 0.927 9 N -0.393 5.393 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.171 4.171 13 C -0.165 4.165 14 C -0.027 4.027 15 N -0.326 5.326 16 C 0.300 3.700 17 O -0.453 6.453 18 C 0.011 3.989 19 H 0.172 0.828 20 C -0.132 4.132 21 C -0.149 4.149 22 C -0.117 4.117 23 C 0.038 3.962 24 F -0.121 7.121 25 C -0.129 4.129 26 C -0.131 4.131 27 C 0.029 3.971 28 O -0.215 6.215 29 C -0.009 4.009 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.108 0.892 40 H 0.178 0.822 41 H 0.186 0.814 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.767 -20.037 2.097 31.157 hybrid contribution -0.650 1.250 -0.323 1.446 sum 23.116 -18.787 1.774 29.841 Atomic orbital electron populations 1.69887 1.07166 1.26708 1.59627 1.25510 0.96118 1.01301 1.02605 0.85420 0.78927 0.79585 0.77910 1.21042 1.22175 1.16967 1.18934 0.82342 0.93311 1.41288 0.92730 1.42648 1.02547 1.03706 1.90446 1.20646 0.90391 0.87248 0.95700 0.95074 1.22083 1.00223 0.97831 0.96942 1.21917 0.95041 0.96371 1.03133 1.22390 0.98269 1.00493 0.81527 1.48003 1.50870 1.24854 1.08876 1.20649 0.79659 0.85923 0.83758 1.90742 1.61741 1.64887 1.27969 1.23360 0.98103 0.92226 0.85185 0.82824 1.21988 0.99145 0.88105 1.03957 1.20570 0.99720 0.94521 1.00084 1.20395 1.00330 0.90693 1.00327 1.17579 1.01816 0.77309 0.99515 1.91499 1.94763 1.30314 1.95553 1.21107 0.98707 0.94907 0.98166 1.20323 1.01013 0.90845 1.00885 1.19956 0.96632 0.82979 0.97486 1.86951 1.81689 1.17760 1.35084 1.21700 0.91315 0.86217 1.01703 0.93329 0.80029 0.93888 0.91383 0.91855 0.87329 0.88378 0.86154 0.83138 0.89205 0.82221 0.81435 0.82918 0.89637 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.23 13.97 21.65 0.30 -62.93 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.95 45.32 27.74 68.60 1.90 47.22 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 7 C -0.23 -12.90 10.41 84.03 0.88 -12.02 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.75 -34.23 4.93 -322.45 -1.59 -35.82 16 10 C 0.17 6.09 2.92 45.09 0.13 6.22 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.13 -3.70 5.47 30.64 0.17 -3.53 16 13 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 14 C 0.09 1.21 6.00 86.36 0.52 1.73 16 15 N -0.59 -13.71 2.97 -818.90 -2.43 -16.14 16 16 C 0.51 13.71 7.07 87.66 0.62 14.33 16 17 O -0.57 -22.09 15.98 15.21 0.24 -21.84 16 18 C 0.07 1.27 3.07 30.43 0.09 1.36 16 19 H 0.15 1.54 7.89 -2.39 -0.02 1.52 16 20 C -0.10 -1.27 5.54 30.73 0.17 -1.10 16 21 C -0.15 -2.37 6.27 -19.53 -0.12 -2.49 16 22 C -0.10 -1.39 10.01 22.23 0.22 -1.17 16 23 C 0.06 0.87 7.31 22.40 0.16 1.04 16 24 F -0.14 -2.38 17.27 44.97 0.78 -1.60 16 25 C -0.11 -1.47 10.00 22.25 0.22 -1.24 16 26 C -0.11 -1.76 10.06 22.44 0.23 -1.54 16 27 C 0.07 1.47 7.03 22.67 0.16 1.63 16 28 O -0.30 -7.41 10.39 -77.55 -0.81 -8.22 16 29 C 0.11 3.50 5.90 86.36 0.51 4.01 16 30 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.37 15.94 5.66 -92.71 -0.52 15.42 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.12 0.67 4.03 -2.39 -0.01 0.66 16 38 H 0.15 0.69 6.59 -2.38 -0.02 0.67 16 39 H 0.09 1.52 7.92 -2.39 -0.02 1.51 16 40 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 2.41 7.01 -2.39 -0.02 2.39 16 Total: -1.00 -81.27 359.21 3.46 -77.81 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.46 Total: 19.52 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.61 Total: 2.00 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -3.72 Total: -114.88 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.56 Total: -30.06 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -81.27 3.46 -77.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000350923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.133 kcal (2) G-P(sol) polarization free energy of solvation -81.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds