Wall clock time and date at job start Tue Mar 31 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48502 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47540 * 300.00321 * 3 2 1 6 6 H 1.48503 * 109.46813 * 60.00352 * 3 2 1 7 7 C 1.38809 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99803 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.52648 * 325.08233 * 10 9 7 12 12 C 1.53033 * 109.49883 * 85.16179 * 10 9 7 13 13 C 1.53041 * 109.53898 * 181.31665 * 12 10 9 14 14 C 1.53192 * 109.31320 * 298.63305 * 13 12 10 15 15 N 1.46927 * 108.77318 * 54.63839 * 14 13 12 16 16 C 1.34772 * 120.63425 * 126.36858 * 15 14 13 17 17 O 1.21284 * 120.00185 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99728 * 0.02562 * 16 15 14 19 19 H 1.08997 * 110.66520 * 58.21867 * 18 16 15 20 20 C 1.54701 * 110.74947 * 294.99920 * 18 16 15 21 21 C 1.51654 * 101.91666 * 267.04316 * 20 18 16 22 22 C 1.37747 * 132.15686 * 164.27785 * 21 20 18 23 23 C 1.38536 * 119.95969 * 180.32272 * 22 21 20 24 24 F 1.35109 * 120.14151 * 180.02562 * 23 22 21 25 25 C 1.38475 * 119.71690 * 0.02908 * 23 22 21 26 26 C 1.37932 * 120.31812 * 359.83338 * 25 23 22 27 27 C 1.38862 * 107.03547 * 344.31985 * 21 20 18 28 28 O 1.36197 * 111.24327 * 359.35182 * 27 21 20 29 29 C 1.46926 * 118.73580 * 306.38910 * 15 14 13 30 30 H 0.97002 * 119.99554 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00347 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.45957 * 61.30080 * 12 10 9 33 33 H 1.09004 * 109.45285 * 301.33358 * 12 10 9 34 34 H 1.09005 * 109.49689 * 178.68550 * 13 12 10 35 35 H 1.08994 * 109.52286 * 58.60459 * 13 12 10 36 36 H 1.08997 * 109.58972 * 294.84829 * 14 13 12 37 37 H 1.09001 * 109.70306 * 174.49208 * 14 13 12 38 38 H 1.09003 * 110.94196 * 25.19704 * 20 18 16 39 39 H 1.08996 * 110.94446 * 148.89099 * 20 18 16 40 40 H 1.08001 * 120.02089 * 0.34971 * 22 21 20 41 41 H 1.07999 * 119.84006 * 179.85804 * 25 23 22 42 42 H 1.08004 * 119.86241 * 179.97438 * 26 25 23 43 43 H 1.09006 * 109.58406 * 173.39827 * 29 15 14 44 44 H 1.09002 * 109.59019 * 293.81816 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9697 -3.5511 -0.5886 12 6 2.4188 -4.0383 1.4369 13 6 3.2125 -5.3468 1.4353 14 6 2.3477 -6.4632 0.8413 15 7 1.8768 -6.0415 -0.4850 16 6 2.0801 -6.8207 -1.5657 17 8 1.6868 -6.4612 -2.6552 18 6 2.7961 -8.1388 -1.4202 19 1 2.2747 -8.7837 -0.7130 20 6 4.2639 -7.9198 -0.9833 21 6 4.9854 -7.8837 -2.3167 22 6 6.2427 -7.4506 -2.6761 23 6 6.6502 -7.5299 -3.9978 24 9 7.8827 -7.1066 -4.3543 25 6 5.7889 -8.0449 -4.9520 26 6 4.5310 -8.4812 -4.5915 27 6 4.1159 -8.4077 -3.2642 28 8 2.9369 -8.7854 -2.6965 29 6 1.1803 -4.7539 -0.6109 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 1.5059 -4.1681 2.0181 33 1 3.0231 -3.2476 1.8816 34 1 3.4891 -5.6057 2.4574 35 1 4.1135 -5.2256 0.8341 36 1 1.4924 -6.6478 1.4912 37 1 2.9382 -7.3745 0.7467 38 1 4.3758 -6.9735 -0.4540 39 1 4.6165 -8.7505 -0.3721 40 1 6.9105 -7.0497 -1.9279 41 1 6.1037 -8.1056 -5.9833 42 1 3.8650 -8.8812 -5.3418 43 1 1.0025 -4.5361 -1.6640 44 1 0.2296 -4.7992 -0.0795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000350924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:56 Heat of formation + Delta-G solvation = -83.923802 kcal Electronic energy + Delta-G solvation = -29074.474856 eV Core-core repulsion = 24906.347518 eV Total energy + Delta-G solvation = -4168.127337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.89460 -42.73343 -40.80736 -38.81434 -38.03104 -36.34007 -34.32068 -33.54827 -32.78345 -31.22313 -30.71369 -29.67234 -26.92668 -25.97601 -24.87428 -23.54789 -23.42586 -22.97404 -21.77044 -20.41211 -19.20298 -18.90878 -18.53338 -18.27594 -17.89270 -17.03936 -16.79717 -16.62560 -16.39202 -16.05204 -15.63846 -15.37317 -15.27307 -15.19216 -14.97764 -14.73266 -14.43210 -14.11273 -14.07747 -13.97568 -13.84550 -13.61120 -13.47721 -12.97601 -12.90577 -12.74704 -12.48388 -12.33106 -12.21605 -12.10610 -11.87912 -11.83100 -11.72670 -11.62607 -10.93923 -10.85055 -10.10880 -9.75226 -9.14895 -9.04889 -7.98083 -5.27518 0.00919 0.09456 1.37134 1.44694 1.46088 1.55359 1.65075 2.14651 2.48140 2.53947 3.01711 3.20361 3.29722 3.35920 3.48617 3.75709 3.78182 3.98675 4.02901 4.05105 4.07805 4.10228 4.16756 4.27296 4.35702 4.44037 4.58050 4.59751 4.63714 4.76434 4.79273 4.81898 4.88021 5.00387 5.05834 5.07726 5.16952 5.18201 5.37624 5.41738 5.45191 5.49961 5.60153 5.96800 6.23925 6.31714 6.99912 7.29893 8.02802 8.26454 9.25433 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.003162 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.429683 B = 8854.191996 C = 9876.860531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.129 4.129 13 C -0.125 4.125 14 C 0.094 3.906 15 N -0.594 5.594 16 C 0.487 3.513 17 O -0.581 6.581 18 C 0.069 3.931 19 H 0.191 0.809 20 C -0.097 4.097 21 C -0.154 4.154 22 C -0.106 4.106 23 C 0.053 3.947 24 F -0.143 7.143 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.077 3.923 28 O -0.288 6.288 29 C 0.118 3.882 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.150 0.850 43 H 0.055 0.945 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.315 -24.568 1.697 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.058 3.942 11 H 0.046 0.954 12 C -0.169 4.169 13 C -0.164 4.164 14 C -0.027 4.027 15 N -0.328 5.328 16 C 0.275 3.725 17 O -0.460 6.460 18 C 0.010 3.990 19 H 0.207 0.793 20 C -0.133 4.133 21 C -0.155 4.155 22 C -0.125 4.125 23 C 0.034 3.966 24 F -0.122 7.122 25 C -0.135 4.135 26 C -0.136 4.136 27 C 0.032 3.968 28 O -0.200 6.200 29 C -0.006 4.006 30 H 0.060 0.940 31 H 0.205 0.795 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.073 0.927 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.135 -24.407 1.023 27.277 hybrid contribution -0.222 1.852 -0.465 1.923 sum 11.913 -22.555 0.558 25.514 Atomic orbital electron populations 1.69820 1.06570 1.26028 1.59439 1.25532 0.96359 1.00981 1.03644 0.85115 0.78237 0.79962 0.76709 1.19117 1.22329 1.21648 1.19566 0.91252 0.85059 1.41141 0.90903 1.42504 1.05481 1.00813 1.88861 1.20638 0.93443 0.84671 0.95410 0.95368 1.22073 1.00162 0.97576 0.97063 1.21929 0.97973 0.93341 1.03149 1.22362 1.00025 0.98767 0.81534 1.48143 1.56688 1.18789 1.09151 1.21706 0.79799 0.87255 0.83750 1.90731 1.52730 1.74438 1.28092 1.23671 0.98434 0.91707 0.85206 0.79257 1.22157 0.88909 1.07627 0.94610 1.20800 0.94766 1.03364 0.96529 1.20419 0.96071 1.00657 0.95316 1.17624 0.81723 1.03266 0.94012 1.91489 1.39991 1.88213 1.92528 1.21093 0.92563 0.98974 1.00919 1.20357 0.96912 1.03331 0.92958 1.19924 0.85952 0.96672 0.94283 1.86930 1.37187 1.62069 1.33854 1.21596 0.95384 0.82687 1.00928 0.93970 0.79489 0.92311 0.93582 0.87219 0.91660 0.88840 0.85633 0.86967 0.82663 0.82410 0.81711 0.83249 0.92665 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.50 13.06 21.65 0.28 -59.21 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.46 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -13.29 9.93 84.03 0.83 -12.46 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -37.21 5.12 -322.58 -1.65 -38.87 16 10 C 0.17 6.51 2.92 45.07 0.13 6.65 16 11 H 0.03 1.20 8.08 -2.39 -0.02 1.19 16 12 C -0.13 -3.88 5.47 30.62 0.17 -3.72 16 13 C -0.13 -2.22 5.97 30.67 0.18 -2.04 16 14 C 0.09 1.34 5.44 86.36 0.47 1.81 16 15 N -0.59 -15.04 2.96 -818.90 -2.42 -17.46 16 16 C 0.49 13.65 7.01 87.66 0.61 14.27 16 17 O -0.58 -23.28 15.94 15.18 0.24 -23.04 16 18 C 0.07 1.21 3.13 30.43 0.10 1.30 16 19 H 0.19 1.49 7.89 -2.39 -0.02 1.47 16 20 C -0.10 -1.19 5.29 30.73 0.16 -1.03 16 21 C -0.15 -3.03 6.26 -19.53 -0.12 -3.15 16 22 C -0.11 -2.06 10.01 22.22 0.22 -1.83 16 23 C 0.05 1.13 7.31 22.40 0.16 1.29 16 24 F -0.14 -3.20 17.27 44.97 0.78 -2.42 16 25 C -0.12 -2.28 10.00 22.25 0.22 -2.06 16 26 C -0.12 -2.53 10.06 22.44 0.23 -2.30 16 27 C 0.08 1.82 6.91 22.67 0.16 1.98 16 28 O -0.29 -6.94 10.41 -77.58 -0.81 -7.75 16 29 C 0.12 4.12 5.90 86.36 0.51 4.63 16 30 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.37 20.24 7.80 -92.71 -0.72 19.51 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.06 1.18 7.47 -2.39 -0.02 1.16 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 0.72 4.69 -2.39 -0.01 0.71 16 38 H 0.11 1.32 5.66 -2.39 -0.01 1.31 16 39 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.05 2.34 7.01 -2.38 -0.02 2.33 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -80.04 360.51 3.27 -76.77 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.32 Total: 23.90 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.50 Total: -0.39 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.79 Total: -115.54 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.57 Total: -30.78 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -80.04 3.27 -76.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000350924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.152 kcal (2) G-P(sol) polarization free energy of solvation -80.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds