Wall clock time and date at job start Tue Mar 31 2020 18:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00650 * 2 1 4 4 H 1.48507 * 109.46810 * 272.93954 * 3 2 1 5 5 H 1.48498 * 109.46758 * 32.93481 * 3 2 1 6 6 H 1.48493 * 109.47525 * 152.93694 * 3 2 1 7 7 C 1.38816 * 119.99426 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00186 * 339.36690 * 7 2 1 9 9 N 1.36942 * 119.99869 * 159.37564 * 7 2 1 10 10 C 1.46921 * 120.63275 * 152.61465 * 9 7 2 11 11 C 1.53186 * 108.77774 * 126.36489 * 10 9 7 12 12 C 1.53039 * 109.31270 * 54.63489 * 11 10 9 13 13 C 1.53039 * 109.53825 * 298.63674 * 12 11 10 14 14 H 1.08997 * 109.49440 * 301.37709 * 13 12 11 15 15 N 1.46504 * 109.49808 * 181.31551 * 13 12 11 16 16 C 1.34776 * 120.00036 * 155.00312 * 15 13 12 17 17 O 1.21278 * 120.00124 * 359.97438 * 16 15 13 18 18 C 1.50698 * 119.99742 * 179.97438 * 16 15 13 19 19 H 1.08998 * 110.66740 * 306.75337 * 18 16 15 20 20 C 1.54706 * 110.75248 * 70.17733 * 18 16 15 21 21 C 1.51645 * 101.92836 * 143.64548 * 20 18 16 22 22 C 1.37750 * 132.14469 * 164.27754 * 21 20 18 23 23 C 1.38537 * 119.95907 * 180.31062 * 22 21 20 24 24 F 1.35108 * 120.14219 * 180.18562 * 23 22 21 25 25 C 1.38474 * 119.71269 * 0.43460 * 23 22 21 26 26 C 1.37927 * 120.32194 * 359.34726 * 25 23 22 27 27 C 1.38867 * 107.04298 * 344.49053 * 21 20 18 28 28 O 1.36190 * 111.23232 * 359.10070 * 27 21 20 29 29 C 1.46920 * 120.62739 * 332.59060 * 9 7 2 30 30 H 0.97002 * 119.99682 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58605 * 6.58145 * 10 9 7 32 32 H 1.09004 * 109.70231 * 246.22554 * 10 9 7 33 33 H 1.08997 * 109.49878 * 294.68606 * 11 10 9 34 34 H 1.09002 * 109.50033 * 174.58425 * 11 10 9 35 35 H 1.09004 * 109.46237 * 178.61034 * 12 11 10 36 36 H 1.09011 * 109.46215 * 58.65478 * 12 11 10 37 37 H 0.97002 * 120.00065 * 334.99690 * 15 13 12 38 38 H 1.09001 * 110.93550 * 261.80431 * 20 18 16 39 39 H 1.09004 * 110.93929 * 25.44457 * 20 18 16 40 40 H 1.08001 * 120.01873 * 0.54835 * 22 21 20 41 41 H 1.07999 * 119.83915 * 179.61480 * 25 23 22 42 42 H 1.08002 * 119.86368 * 180.34775 * 26 25 23 43 43 H 1.09002 * 109.58968 * 113.84951 * 29 9 7 44 44 H 1.09002 * 109.59228 * 353.41349 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4357 2.0821 -1.3983 5 1 1.4803 2.6338 0.7612 6 1 3.5775 1.4229 0.6369 7 6 2.0101 -1.2023 0.0005 8 1 1.5221 -2.1074 0.3305 9 7 3.3137 -1.2405 -0.4172 10 6 4.2348 -2.2633 0.0968 11 6 4.8746 -2.9916 -1.0893 12 6 5.5286 -1.9671 -2.0193 13 6 4.4621 -1.0107 -2.5579 14 1 3.6996 -1.5789 -3.0906 15 7 5.0840 -0.0499 -3.4725 16 6 4.3457 0.5419 -4.4322 17 8 3.1666 0.2788 -4.5390 18 6 4.9853 1.5307 -5.3726 19 1 5.5018 2.3124 -4.8158 20 6 5.9520 0.8152 -6.3457 21 6 5.7477 1.6024 -7.6257 22 6 6.4819 1.6829 -8.7884 23 6 6.0570 2.5051 -9.8194 24 9 6.7722 2.5839 -10.9629 25 6 4.8990 3.2496 -9.6707 26 6 4.1616 3.1655 -8.5081 27 6 4.5793 2.3365 -7.4699 28 8 4.0052 2.0987 -6.2580 29 6 3.8176 -0.2599 -1.3883 30 1 -0.4850 0.8401 -0.0004 31 1 3.6836 -2.9767 0.7094 32 1 5.0118 -1.7898 0.6971 33 1 4.1078 -3.5411 -1.6353 34 1 5.6309 -3.6866 -0.7245 35 1 6.0059 -2.4847 -2.8514 36 1 6.2781 -1.4009 -1.4662 37 1 6.0271 0.1604 -3.3873 38 1 6.9826 0.8949 -5.9997 39 1 5.6679 -0.2285 -6.4800 40 1 7.3861 1.1024 -8.8978 41 1 4.5693 3.8959 -10.4706 42 1 3.2565 3.7453 -8.4023 43 1 4.5604 0.3790 -0.9106 44 1 2.9912 0.3485 -1.7558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008728514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:45 Heat of formation + Delta-G solvation = -79.580483 kcal Electronic energy + Delta-G solvation = -28660.209113 eV Core-core repulsion = 24492.270116 eV Total energy + Delta-G solvation = -4167.938997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87936 -42.56168 -40.84787 -39.19410 -38.15248 -36.00277 -34.61350 -33.92974 -32.60863 -31.57286 -30.76808 -29.95009 -27.22261 -25.96307 -24.37148 -23.66663 -23.26513 -22.93827 -21.78436 -21.02505 -18.95319 -18.86269 -18.75967 -18.22335 -18.20038 -17.51097 -16.98442 -16.60019 -16.42847 -15.99156 -15.78075 -15.54948 -15.44100 -15.27738 -14.89751 -14.55947 -14.51268 -14.29584 -14.14379 -14.05709 -13.93970 -13.84193 -13.57676 -13.42098 -13.04151 -12.65521 -12.56648 -12.47964 -12.15670 -11.86075 -11.79255 -11.71025 -11.66599 -11.36625 -10.95403 -10.83450 -10.26294 -10.13552 -9.17979 -8.95387 -8.23272 -5.53916 -0.00487 0.08267 1.23675 1.28661 1.29130 1.39687 1.56266 2.27169 2.36297 2.48054 2.94632 3.05992 3.20600 3.33091 3.46518 3.62747 3.76733 3.81437 3.88995 4.03308 4.03862 4.14792 4.17930 4.33991 4.37332 4.40156 4.60695 4.63962 4.67749 4.78456 4.80272 4.88532 4.99712 5.00630 5.04936 5.08632 5.16790 5.18586 5.23931 5.34073 5.46963 5.55957 5.82665 5.96786 6.07394 6.44082 6.87215 7.14100 7.58260 7.96602 8.96707 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.002877 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.065355 B = 9729.644067 C =10809.475361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.039 4.039 3 Si 0.947 3.053 4 H -0.296 1.296 5 H -0.308 1.308 6 H -0.245 1.245 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.618 5.618 10 C 0.135 3.865 11 C -0.126 4.126 12 C -0.104 4.104 13 C 0.136 3.864 14 H 0.053 0.947 15 N -0.696 5.696 16 C 0.506 3.494 17 O -0.574 6.574 18 C 0.064 3.936 19 H 0.147 0.853 20 C -0.084 4.084 21 C -0.147 4.147 22 C -0.095 4.095 23 C 0.058 3.942 24 F -0.141 7.141 25 C -0.110 4.110 26 C -0.117 4.117 27 C 0.070 3.930 28 O -0.309 6.309 29 C 0.116 3.884 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.424 0.576 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.043 0.957 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.058 3.365 -17.116 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.234 4.234 3 Si 0.777 3.223 4 H -0.224 1.224 5 H -0.237 1.237 6 H -0.169 1.169 7 C -0.377 4.377 8 H 0.072 0.928 9 N -0.343 5.343 10 C 0.012 3.988 11 C -0.165 4.165 12 C -0.142 4.142 13 C 0.030 3.970 14 H 0.071 0.929 15 N -0.351 5.351 16 C 0.291 3.709 17 O -0.451 6.451 18 C 0.005 3.995 19 H 0.164 0.836 20 C -0.120 4.120 21 C -0.148 4.148 22 C -0.114 4.114 23 C 0.039 3.961 24 F -0.119 7.119 25 C -0.129 4.129 26 C -0.136 4.136 27 C 0.025 3.975 28 O -0.223 6.223 29 C -0.010 4.010 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.263 0.737 38 H 0.172 0.828 39 H 0.116 0.884 40 H 0.184 0.816 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.061 0.939 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 22.906 3.271 -17.105 28.774 hybrid contribution -0.581 1.027 0.066 1.181 sum 22.325 4.297 -17.039 28.411 Atomic orbital electron populations 1.69974 1.07491 1.27057 1.55772 1.25959 0.95881 1.01203 1.00322 0.85885 0.79592 0.80518 0.76324 1.22440 1.23705 1.16889 1.18881 0.87178 0.93409 1.38281 0.92780 1.44437 1.08005 1.35137 1.46743 1.21279 0.92058 0.90272 0.95235 1.21931 1.00124 0.97873 0.96584 1.21676 0.96119 0.96284 1.00137 1.21427 0.96419 0.90140 0.89039 0.92913 1.45698 1.14040 1.44014 1.31321 1.20769 0.86636 0.81725 0.81747 1.90819 1.18322 1.63444 1.72556 1.23448 0.88011 0.96074 0.91991 0.83564 1.21816 1.02291 0.99271 0.88670 1.20620 0.96747 0.99761 0.97629 1.20395 1.01406 0.99121 0.90433 1.17549 0.93165 1.01694 0.83681 1.91502 1.77359 1.95431 1.47648 1.21081 0.93506 1.00069 0.98217 1.20320 1.02477 0.99367 0.91416 1.20031 0.93581 0.96573 0.87338 1.86981 1.36194 1.78309 1.20825 1.21690 0.96701 0.92391 0.90244 0.93158 0.92736 0.93456 0.93681 0.87667 0.88675 0.88985 0.73713 0.82846 0.88360 0.81639 0.81486 0.83562 0.93900 0.95084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.26 13.97 21.65 0.30 -63.96 16 2 C -0.04 -2.43 5.23 84.86 0.44 -1.99 16 3 Si 0.95 49.96 24.35 68.60 1.67 51.63 16 4 H -0.30 -15.92 6.62 99.48 0.66 -15.26 16 5 H -0.31 -16.32 7.11 99.48 0.71 -15.62 16 6 H -0.25 -11.67 6.64 99.48 0.66 -11.01 16 7 C -0.25 -14.68 10.03 84.03 0.84 -13.84 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 9 N -0.62 -29.35 2.77 -699.10 -1.94 -31.29 16 10 C 0.14 4.80 6.52 86.36 0.56 5.37 16 11 C -0.13 -3.30 6.08 30.67 0.19 -3.11 16 12 C -0.10 -2.30 5.35 30.62 0.16 -2.14 16 13 C 0.14 4.48 2.61 45.07 0.12 4.60 16 14 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 15 N -0.70 -17.27 5.08 -442.16 -2.25 -19.51 16 16 C 0.51 15.95 7.09 87.66 0.62 16.57 16 17 O -0.57 -26.64 16.24 15.18 0.25 -26.40 16 18 C 0.06 1.42 4.05 30.43 0.12 1.54 16 19 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 20 C -0.08 -1.16 6.64 30.73 0.20 -0.95 16 21 C -0.15 -2.56 6.27 -19.53 -0.12 -2.68 16 22 C -0.10 -1.37 10.02 22.23 0.22 -1.15 16 23 C 0.06 0.95 7.31 22.40 0.16 1.11 16 24 F -0.14 -2.39 17.27 44.97 0.78 -1.61 16 25 C -0.11 -1.71 10.00 22.25 0.22 -1.49 16 26 C -0.12 -2.27 10.06 22.44 0.23 -2.05 16 27 C 0.07 1.63 7.04 22.67 0.16 1.79 16 28 O -0.31 -9.32 10.39 -77.52 -0.81 -10.12 16 29 C 0.12 5.02 3.78 86.37 0.33 5.35 16 30 H 0.26 16.67 8.31 -92.71 -0.77 15.90 16 31 H 0.05 2.01 7.93 -2.39 -0.02 2.00 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.42 5.66 8.60 -92.71 -0.80 4.86 16 38 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 1.48 7.92 -2.38 -0.02 1.46 16 40 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.04 1.70 7.08 -2.39 -0.02 1.68 16 44 H 0.03 1.65 4.50 -2.39 -0.01 1.64 16 Total: -1.00 -89.41 359.64 2.62 -86.79 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.14 Total: 7.54 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.46 Total: 6.93 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -3.88 Total: -114.76 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.56 Total: -36.52 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 1.67 Total: 51.63 kcal Total: -89.41 2.62 -86.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008728514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.212 kcal (2) G-P(sol) polarization free energy of solvation -89.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds