Wall clock time and date at job start Tue Mar 31 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00350 * 2 1 4 4 H 1.48502 * 109.47296 * 270.00181 * 3 2 1 5 5 H 1.48502 * 109.46911 * 30.00056 * 3 2 1 6 6 H 1.48496 * 109.47171 * 149.99957 * 3 2 1 7 7 C 1.38815 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 197.35566 * 7 2 1 9 9 N 1.36941 * 120.00239 * 17.36052 * 7 2 1 10 10 C 1.46923 * 120.62958 * 27.68002 * 9 7 2 11 11 C 1.53192 * 108.77461 * 126.39534 * 10 9 7 12 12 C 1.53038 * 109.31322 * 54.63411 * 11 10 9 13 13 C 1.53040 * 109.53787 * 298.63150 * 12 11 10 14 14 H 1.08994 * 109.49931 * 301.38966 * 13 12 11 15 15 N 1.46497 * 109.49886 * 181.31615 * 13 12 11 16 16 C 1.34770 * 120.00002 * 155.06754 * 15 13 12 17 17 O 1.21637 * 120.00585 * 0.02562 * 16 15 13 18 18 C 1.47190 * 120.00206 * 180.02562 * 16 15 13 19 19 C 1.35630 * 123.19007 * 359.97351 * 18 16 15 20 20 S 1.70266 * 110.84729 * 180.02562 * 19 18 16 21 21 C 1.75599 * 92.62402 * 359.97438 * 20 19 18 22 22 C 1.34006 * 110.60017 * 0.02562 * 21 20 19 23 23 C 1.52012 * 123.46413 * 179.97438 * 22 21 20 24 24 C 1.53040 * 108.75497 * 342.86468 * 23 22 21 25 25 C 1.53608 * 109.22528 * 50.73450 * 24 23 22 26 26 C 1.51612 * 125.05032 * 180.02562 * 21 20 19 27 27 C 1.46930 * 120.60380 * 207.66098 * 9 7 2 28 28 H 0.97001 * 119.99329 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58653 * 6.60430 * 10 9 7 30 30 H 1.09004 * 109.69986 * 246.24961 * 10 9 7 31 31 H 1.08998 * 109.49138 * 294.67990 * 11 10 9 32 32 H 1.09005 * 109.52229 * 174.60111 * 11 10 9 33 33 H 1.09001 * 109.45806 * 178.61616 * 12 11 10 34 34 H 1.08994 * 109.46041 * 58.65578 * 12 11 10 35 35 H 0.97002 * 120.00382 * 335.06878 * 15 13 12 36 36 H 1.08001 * 124.57336 * 0.02562 * 19 18 16 37 37 H 1.09005 * 109.58834 * 102.64471 * 23 22 21 38 38 H 1.09004 * 109.59573 * 222.93685 * 23 22 21 39 39 H 1.09001 * 109.51554 * 170.58129 * 24 23 22 40 40 H 1.08998 * 109.51513 * 290.69103 * 24 23 22 41 41 H 1.08998 * 109.71912 * 169.78451 * 25 24 23 42 42 H 1.08994 * 109.58800 * 49.38316 * 25 24 23 43 43 H 1.08998 * 109.59470 * 283.18594 * 26 21 20 44 44 H 1.09002 * 109.59098 * 43.48305 * 26 21 20 45 45 H 1.09001 * 109.55880 * 113.80396 * 27 9 7 46 46 H 1.09006 * 109.61978 * 353.37830 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2784 9 7 1.3723 -2.3610 -0.3549 10 6 0.2279 -2.3339 -1.2759 11 6 0.5010 -3.3033 -2.4303 12 6 0.8189 -4.6887 -1.8634 13 6 2.0746 -4.6094 -0.9920 14 1 2.9085 -4.2394 -1.5884 15 7 2.3962 -5.9419 -0.4753 16 6 3.6629 -6.2416 -0.1260 17 8 4.5391 -5.4055 -0.2394 18 6 3.9861 -7.5806 0.3927 19 6 3.0612 -8.5606 0.5461 20 16 3.7753 -9.9758 1.1677 21 6 5.3693 -9.2418 1.2278 22 6 5.3228 -7.9768 0.7881 23 6 6.5400 -7.0690 0.7163 24 6 7.6471 -7.6603 1.5921 25 6 7.8458 -9.1389 1.2265 26 6 6.6293 -9.9345 1.7087 27 6 1.8201 -3.6547 0.1787 28 1 -0.4849 0.8401 0.0004 29 1 0.0985 -1.3253 -1.6684 30 1 -0.6757 -2.6394 -0.7483 31 1 1.3496 -2.9450 -3.0130 32 1 -0.3795 -3.3652 -3.0700 33 1 0.9896 -5.3862 -2.6834 34 1 -0.0201 -5.0357 -1.2604 35 1 1.6975 -6.6086 -0.3845 36 1 2.0132 -8.4572 0.3064 37 1 6.8862 -7.0027 -0.3151 38 1 6.2766 -6.0751 1.0780 39 1 8.5761 -7.1162 1.4214 40 1 7.3643 -7.5778 2.6415 41 1 8.7453 -9.5197 1.7102 42 1 7.9418 -9.2383 0.1454 43 1 6.6289 -9.9793 2.7977 44 1 6.6691 -10.9448 1.3013 45 1 1.0479 -4.0690 0.8269 46 1 2.7411 -3.5178 0.7455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009462153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:05 Heat of formation + Delta-G solvation = -4.762545 kcal Electronic energy + Delta-G solvation = -26610.131374 eV Core-core repulsion = 23011.649902 eV Total energy + Delta-G solvation = -3598.481472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.06816 -38.60865 -37.19405 -35.09436 -34.25726 -32.38414 -30.91513 -30.45076 -29.62595 -28.25999 -25.26830 -24.86404 -23.46583 -22.55683 -22.07751 -21.37774 -19.85649 -19.26048 -18.35388 -17.61788 -16.81756 -16.69950 -15.47555 -15.12041 -14.70845 -14.60834 -14.52319 -14.13474 -13.99533 -13.84600 -13.50254 -13.33596 -13.16145 -12.91804 -12.83092 -12.44455 -12.38196 -12.25950 -11.79724 -11.71095 -11.58864 -11.07567 -11.01858 -10.88324 -10.84049 -10.78512 -10.52276 -10.24772 -10.20221 -9.89056 -9.88425 -9.61446 -9.44046 -8.84212 -8.74414 -8.45398 -8.34316 -6.65576 -5.76170 -3.18162 0.65470 1.35321 1.77219 1.92971 3.37884 3.42170 3.48523 3.51545 3.52414 4.34137 4.54231 4.61230 4.68368 4.75068 4.97920 5.02797 5.15279 5.30243 5.33940 5.38665 5.39369 5.42296 5.54960 5.57823 5.63352 5.69475 5.74125 5.74585 5.90089 6.01666 6.09810 6.10827 6.16524 6.17854 6.25100 6.49738 6.54158 6.62434 6.69913 6.71364 6.86034 7.02028 7.37193 7.66244 7.77415 7.85701 8.44811 8.51017 9.24543 9.86797 10.42387 11.32605 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.002840 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.345655 B = 9856.697430 C =11008.589190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.127 3.873 14 H 0.087 0.913 15 N -0.717 5.717 16 C 0.570 3.430 17 O -0.527 6.527 18 C -0.139 4.139 19 C -0.217 4.217 20 S 0.170 5.830 21 C -0.210 4.210 22 C -0.049 4.049 23 C -0.055 4.055 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.043 4.043 27 C 0.143 3.857 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.392 0.608 36 H 0.169 0.831 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.016 0.984 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -23.482 0.789 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.105 0.895 15 N -0.368 5.368 16 C 0.355 3.645 17 O -0.405 6.405 18 C -0.157 4.157 19 C -0.355 4.355 20 S 0.439 5.561 21 C -0.327 4.327 22 C -0.060 4.060 23 C -0.094 4.094 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.082 4.082 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.225 0.775 36 H 0.186 0.814 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.034 0.966 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.437 -24.146 1.103 25.601 hybrid contribution 0.141 1.893 -0.381 1.936 sum 8.578 -22.253 0.722 23.860 Atomic orbital electron populations 1.70044 1.05244 1.25462 1.54173 1.25021 0.95300 0.98397 1.00938 0.86264 0.79187 0.83499 0.77731 1.21403 1.21802 1.20343 1.19250 0.92851 0.84699 1.41125 0.91499 1.44003 1.35578 1.01048 1.50395 1.20839 0.88575 0.98597 0.87865 1.22178 1.00445 0.95145 1.00134 1.21678 0.96731 0.98634 0.98246 1.21758 0.97830 0.81046 0.97169 0.89464 1.46017 1.08882 1.15841 1.66011 1.17591 0.82860 0.86147 0.77900 1.90796 1.46770 1.49334 1.53580 1.20271 0.93178 0.95344 1.06894 1.25395 1.04136 0.98892 1.07066 1.82791 0.98979 1.13012 1.61310 1.24647 0.98823 0.98091 1.11110 1.20435 0.93885 0.93453 0.98256 1.20545 0.90093 0.98016 1.00727 1.21708 0.98818 0.95360 1.00125 1.21670 0.96692 0.95490 1.01639 1.20290 0.89343 0.97928 1.00626 1.21181 0.97921 0.86779 0.92586 0.93682 0.89238 0.96335 0.92393 0.92721 0.93122 0.92308 0.77485 0.81376 0.90299 0.88769 0.91204 0.91659 0.91181 0.91445 0.90352 0.90687 0.96580 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.28 29.59 -169.99 -5.03 17.25 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -7.11 9.58 -15.06 -0.14 -7.26 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 9 N -0.59 -15.15 3.00 -172.31 -0.52 -15.67 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.79 16 12 C -0.11 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C 0.13 2.33 2.60 -67.81 -0.18 2.16 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 15 N -0.72 -10.83 5.05 -54.84 -0.28 -11.11 16 16 C 0.57 9.37 7.76 -12.63 -0.10 9.27 16 17 O -0.53 -10.53 14.26 5.24 0.07 -10.46 16 18 C -0.14 -1.87 5.97 -104.55 -0.62 -2.49 16 19 C -0.22 -2.28 10.35 29.80 0.31 -1.97 16 20 S 0.17 1.51 22.99 -107.50 -2.47 -0.96 16 21 C -0.21 -2.17 6.32 -35.35 -0.22 -2.39 16 22 C -0.05 -0.63 5.95 -102.82 -0.61 -1.24 16 23 C -0.05 -0.68 5.08 -27.21 -0.14 -0.82 16 24 C -0.12 -1.14 5.91 -26.39 -0.16 -1.30 16 25 C -0.12 -0.88 5.97 -26.34 -0.16 -1.04 16 26 C -0.04 -0.33 6.25 -27.36 -0.17 -0.50 16 27 C 0.14 3.19 6.09 -3.71 -0.02 3.16 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.39 4.64 7.07 -40.82 -0.29 4.35 16 36 H 0.17 1.36 6.97 -52.49 -0.37 1.00 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.39 6.93 -51.93 -0.36 1.03 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -32.21 371.37 -11.80 -44.02 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.17 Total: 2.55 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.62 Total: -5.30 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.17 Total: -52.70 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.21 -11.80 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009462153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.253 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds