Wall clock time and date at job start Tue Mar 31 2020 18:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00350 * 2 1 4 4 H 1.48502 * 109.47296 * 270.00181 * 3 2 1 5 5 H 1.48502 * 109.46911 * 30.00056 * 3 2 1 6 6 H 1.48496 * 109.47171 * 149.99957 * 3 2 1 7 7 C 1.38815 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 197.35566 * 7 2 1 9 9 N 1.36941 * 120.00239 * 17.36052 * 7 2 1 10 10 C 1.46923 * 120.62958 * 27.68002 * 9 7 2 11 11 C 1.53192 * 108.77461 * 126.39534 * 10 9 7 12 12 C 1.53038 * 109.31322 * 54.63411 * 11 10 9 13 13 C 1.53040 * 109.53787 * 298.63150 * 12 11 10 14 14 H 1.08994 * 109.49931 * 301.38966 * 13 12 11 15 15 N 1.46497 * 109.49886 * 181.31615 * 13 12 11 16 16 C 1.34770 * 120.00002 * 155.06754 * 15 13 12 17 17 O 1.21637 * 120.00585 * 0.02562 * 16 15 13 18 18 C 1.47190 * 120.00206 * 180.02562 * 16 15 13 19 19 C 1.35630 * 123.19007 * 359.97351 * 18 16 15 20 20 S 1.70266 * 110.84729 * 180.02562 * 19 18 16 21 21 C 1.75599 * 92.62402 * 359.97438 * 20 19 18 22 22 C 1.34006 * 110.60017 * 0.02562 * 21 20 19 23 23 C 1.52012 * 123.46413 * 179.97438 * 22 21 20 24 24 C 1.53040 * 108.75497 * 342.86468 * 23 22 21 25 25 C 1.53608 * 109.22528 * 50.73450 * 24 23 22 26 26 C 1.51612 * 125.05032 * 180.02562 * 21 20 19 27 27 C 1.46930 * 120.60380 * 207.66098 * 9 7 2 28 28 H 0.97001 * 119.99329 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58653 * 6.60430 * 10 9 7 30 30 H 1.09004 * 109.69986 * 246.24961 * 10 9 7 31 31 H 1.08998 * 109.49138 * 294.67990 * 11 10 9 32 32 H 1.09005 * 109.52229 * 174.60111 * 11 10 9 33 33 H 1.09001 * 109.45806 * 178.61616 * 12 11 10 34 34 H 1.08994 * 109.46041 * 58.65578 * 12 11 10 35 35 H 0.97002 * 120.00382 * 335.06878 * 15 13 12 36 36 H 1.08001 * 124.57336 * 0.02562 * 19 18 16 37 37 H 1.09005 * 109.58834 * 102.64471 * 23 22 21 38 38 H 1.09004 * 109.59573 * 222.93685 * 23 22 21 39 39 H 1.09001 * 109.51554 * 170.58129 * 24 23 22 40 40 H 1.08998 * 109.51513 * 290.69103 * 24 23 22 41 41 H 1.08998 * 109.71912 * 169.78451 * 25 24 23 42 42 H 1.08994 * 109.58800 * 49.38316 * 25 24 23 43 43 H 1.08998 * 109.59470 * 283.18594 * 26 21 20 44 44 H 1.09002 * 109.59098 * 43.48305 * 26 21 20 45 45 H 1.09001 * 109.55880 * 113.80396 * 27 9 7 46 46 H 1.09006 * 109.61978 * 353.37830 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2784 9 7 1.3723 -2.3610 -0.3549 10 6 0.2279 -2.3339 -1.2759 11 6 0.5010 -3.3033 -2.4303 12 6 0.8189 -4.6887 -1.8634 13 6 2.0746 -4.6094 -0.9920 14 1 2.9085 -4.2394 -1.5884 15 7 2.3962 -5.9419 -0.4753 16 6 3.6629 -6.2416 -0.1260 17 8 4.5391 -5.4055 -0.2394 18 6 3.9861 -7.5806 0.3927 19 6 3.0612 -8.5606 0.5461 20 16 3.7753 -9.9758 1.1677 21 6 5.3693 -9.2418 1.2278 22 6 5.3228 -7.9768 0.7881 23 6 6.5400 -7.0690 0.7163 24 6 7.6471 -7.6603 1.5921 25 6 7.8458 -9.1389 1.2265 26 6 6.6293 -9.9345 1.7087 27 6 1.8201 -3.6547 0.1787 28 1 -0.4849 0.8401 0.0004 29 1 0.0985 -1.3253 -1.6684 30 1 -0.6757 -2.6394 -0.7483 31 1 1.3496 -2.9450 -3.0130 32 1 -0.3795 -3.3652 -3.0700 33 1 0.9896 -5.3862 -2.6834 34 1 -0.0201 -5.0357 -1.2604 35 1 1.6975 -6.6086 -0.3845 36 1 2.0132 -8.4572 0.3064 37 1 6.8862 -7.0027 -0.3151 38 1 6.2766 -6.0751 1.0780 39 1 8.5761 -7.1162 1.4214 40 1 7.3643 -7.5778 2.6415 41 1 8.7453 -9.5197 1.7102 42 1 7.9418 -9.2383 0.1454 43 1 6.6289 -9.9793 2.7977 44 1 6.6691 -10.9448 1.3013 45 1 1.0479 -4.0690 0.8269 46 1 2.7411 -3.5178 0.7455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009462153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:04 Heat of formation + Delta-G solvation = -23.808743 kcal Electronic energy + Delta-G solvation = -26610.957279 eV Core-core repulsion = 23011.649902 eV Total energy + Delta-G solvation = -3599.307377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26195 -39.70833 -38.71204 -36.09784 -35.81565 -34.11373 -32.37441 -31.69562 -30.86537 -29.49636 -27.29259 -25.93630 -24.24410 -23.93554 -23.74058 -22.59348 -21.29345 -20.65418 -19.18193 -18.77058 -18.51861 -17.89404 -17.05369 -16.57012 -16.26195 -15.88309 -15.51714 -15.32437 -15.22780 -15.09689 -14.85451 -14.71193 -14.34990 -14.16036 -14.06515 -13.91900 -13.66395 -13.39192 -13.10136 -13.05315 -12.77376 -12.61145 -12.48924 -12.37463 -12.14266 -11.99543 -11.79599 -11.74025 -11.64637 -11.56705 -11.34597 -11.25514 -10.78434 -10.64127 -10.17616 -9.57314 -9.22822 -8.72742 -7.93359 -5.38980 -0.21915 0.58731 0.93770 0.94628 1.42598 1.43861 1.53512 2.12017 2.33749 2.48952 3.20459 3.58139 3.67719 3.80374 3.86059 4.01371 4.04303 4.07865 4.09541 4.22089 4.26602 4.34911 4.44606 4.53640 4.58987 4.62386 4.69247 4.77177 4.88040 4.91082 4.97959 4.98223 4.99608 5.08871 5.10187 5.13917 5.20352 5.23759 5.34035 5.43334 5.44358 5.53679 5.59685 5.61183 5.73640 6.33876 6.57404 7.09887 7.25791 7.79119 8.29110 9.12357 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.002840 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.345655 B = 9856.697430 C =11008.589190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.270 4.270 8 H 0.052 0.948 9 N -0.607 5.607 10 C 0.171 3.829 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.144 3.856 14 H 0.057 0.943 15 N -0.704 5.704 16 C 0.566 3.434 17 O -0.576 6.576 18 C -0.175 4.175 19 C -0.211 4.211 20 S 0.247 5.753 21 C -0.212 4.212 22 C -0.083 4.083 23 C -0.053 4.053 24 C -0.119 4.119 25 C -0.112 4.112 26 C -0.045 4.045 27 C 0.147 3.853 28 H 0.253 0.747 29 H 0.056 0.944 30 H 0.006 0.994 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.412 0.588 36 H 0.194 0.806 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.020 0.980 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -27.094 0.706 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.239 4.239 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.400 4.400 8 H 0.069 0.931 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.037 3.963 14 H 0.075 0.925 15 N -0.356 5.356 16 C 0.353 3.647 17 O -0.457 6.457 18 C -0.193 4.193 19 C -0.350 4.350 20 S 0.517 5.483 21 C -0.329 4.329 22 C -0.093 4.093 23 C -0.093 4.093 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.084 4.084 27 C 0.020 3.980 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.211 0.789 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.038 0.962 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.062 -27.818 1.019 28.981 hybrid contribution 0.232 2.912 -0.275 2.934 sum 8.294 -24.907 0.744 26.262 Atomic orbital electron populations 1.70168 1.06359 1.26066 1.54818 1.25723 0.96150 1.01206 1.00805 0.85290 0.77969 0.79508 0.77833 1.20741 1.21330 1.20091 1.19401 0.92575 0.86432 1.41597 0.93068 1.44227 1.36035 1.01444 1.51362 1.20732 0.87497 0.98259 0.88940 1.22017 1.01426 0.95169 0.98266 1.21610 0.95745 0.97771 0.99036 1.21255 0.98023 0.81692 0.95284 0.92488 1.45751 1.09319 1.14887 1.65614 1.18164 0.82470 0.87107 0.76937 1.90772 1.48185 1.51164 1.55586 1.20062 0.94609 0.94501 1.10134 1.25793 1.05030 0.99029 1.05098 1.82570 0.96671 1.10370 1.58695 1.25093 1.01069 0.97476 1.09262 1.20480 0.93585 0.94709 1.00523 1.20410 0.91777 0.96764 1.00306 1.21689 0.97725 0.96982 0.99251 1.21662 0.97913 0.93813 1.01655 1.20468 0.87822 0.98575 1.01525 1.21189 0.96229 0.86560 0.94041 0.93779 0.92607 0.97592 0.93459 0.89517 0.89483 0.90479 0.75126 0.78878 0.91843 0.92593 0.90694 0.91750 0.88736 0.91891 0.88958 0.88395 0.96246 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 11.19 21.65 0.24 -55.76 16 2 C -0.04 -2.51 4.91 84.86 0.42 -2.09 16 3 Si 0.97 47.11 29.59 68.60 2.03 49.14 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.27 -16.11 9.58 84.03 0.81 -15.30 16 8 H 0.05 3.14 7.89 -2.91 -0.02 3.11 16 9 N -0.61 -32.61 3.00 -699.07 -2.09 -34.70 16 10 C 0.17 8.34 5.31 86.36 0.46 8.80 16 11 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 12 C -0.10 -3.16 5.35 30.62 0.16 -3.00 16 13 C 0.14 5.34 2.60 45.07 0.12 5.45 16 14 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 15 N -0.70 -21.03 5.05 -445.67 -2.25 -23.28 16 16 C 0.57 19.30 7.76 86.60 0.67 19.98 16 17 O -0.58 -24.99 14.26 -4.15 -0.06 -25.04 16 18 C -0.17 -4.68 5.97 -19.82 -0.12 -4.80 16 19 C -0.21 -3.88 10.35 67.22 0.70 -3.19 16 20 S 0.25 3.46 22.99 -56.49 -1.30 2.16 16 21 C -0.21 -3.92 6.32 25.01 0.16 -3.76 16 22 C -0.08 -2.11 5.95 -18.70 -0.11 -2.22 16 23 C -0.05 -1.43 5.08 30.28 0.15 -1.28 16 24 C -0.12 -2.23 5.91 30.81 0.18 -2.05 16 25 C -0.11 -1.48 5.97 30.85 0.18 -1.30 16 26 C -0.04 -0.55 6.25 30.19 0.19 -0.36 16 27 C 0.15 6.82 6.09 86.36 0.53 7.35 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.06 3.08 6.04 -2.39 -0.01 3.07 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.41 8.83 7.07 -92.71 -0.66 8.17 16 36 H 0.19 2.38 6.97 -2.91 -0.02 2.36 16 37 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.06 1.88 6.93 -2.39 -0.02 1.87 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.03 1.38 7.93 -2.38 -0.02 1.36 16 Total: -1.00 -75.86 371.37 1.58 -74.27 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.33 Total: 15.54 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.68 Total: -2.32 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.10 Total: -113.74 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.30 Total: 2.16 kcal Total: -75.86 1.58 -74.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009462153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.466 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds