Wall clock time and date at job start Tue Mar 31 2020 18:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00287 * 2 1 4 4 H 1.48499 * 109.47303 * 90.00201 * 3 2 1 5 5 H 1.48510 * 109.47017 * 210.00012 * 3 2 1 6 6 H 1.48507 * 109.47212 * 329.99874 * 3 2 1 7 7 C 1.38818 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99839 * 18.71627 * 7 2 1 9 9 N 1.36933 * 120.00011 * 198.72795 * 7 2 1 10 10 C 1.46930 * 120.62979 * 30.80696 * 9 7 2 11 11 C 1.53631 * 108.54158 * 126.37366 * 10 9 7 12 12 C 1.53037 * 109.24307 * 54.85694 * 11 10 9 13 13 C 1.53045 * 109.53581 * 298.51127 * 12 11 10 14 14 H 1.09001 * 109.52343 * 301.39431 * 13 12 11 15 15 N 1.46504 * 109.49726 * 181.31694 * 13 12 11 16 16 C 1.34773 * 119.99781 * 155.15809 * 15 13 12 17 17 O 1.21282 * 120.00370 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99875 * 180.02562 * 16 15 13 19 19 H 1.09003 * 110.67088 * 55.69997 * 18 16 15 20 20 C 1.54712 * 110.75391 * 292.48254 * 18 16 15 21 21 C 1.51942 * 101.79971 * 216.52543 * 20 18 16 22 22 C 1.37812 * 132.08289 * 195.80378 * 21 20 18 23 23 C 1.38321 * 120.02412 * 178.82563 * 22 21 20 24 24 C 1.38293 * 119.78090 * 359.97438 * 23 22 21 25 25 C 1.38099 * 120.32705 * 0.22542 * 24 23 22 26 26 F 1.35101 * 119.90079 * 179.97438 * 25 24 23 27 27 C 1.38782 * 107.11892 * 15.12170 * 21 20 18 28 28 O 1.36198 * 111.24506 * 1.26173 * 27 21 20 29 29 C 1.46928 * 120.63112 * 211.08933 * 9 7 2 30 30 H 0.96998 * 120.00613 * 174.95420 * 1 2 3 31 31 H 1.09002 * 109.58504 * 246.20331 * 10 9 7 32 32 H 1.08995 * 109.58550 * 6.63077 * 10 9 7 33 33 H 1.08996 * 109.62893 * 294.86031 * 11 10 9 34 34 H 1.09000 * 109.45467 * 174.73724 * 11 10 9 35 35 H 1.08999 * 109.46154 * 178.49503 * 12 11 10 36 36 H 1.08993 * 109.45032 * 58.52143 * 12 11 10 37 37 H 0.96999 * 120.00083 * 335.16673 * 15 13 12 38 38 H 1.08999 * 110.93307 * 334.56373 * 20 18 16 39 39 H 1.08993 * 110.93927 * 98.23887 * 20 18 16 40 40 H 1.08006 * 119.98748 * 358.80575 * 22 21 20 41 41 H 1.07997 * 120.10599 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.83804 * 180.19848 * 24 23 22 43 43 H 1.09003 * 109.58427 * 353.37489 * 29 9 7 44 44 H 1.09005 * 109.58493 * 113.65112 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5478 1.4400 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.5130 -2.1126 -0.3011 9 7 3.3252 -1.2338 0.3802 10 6 3.8391 -0.2839 1.3763 11 6 4.5288 -1.0767 2.4971 12 6 5.5973 -1.9868 1.8872 13 6 4.9366 -2.9817 0.9302 14 1 4.1959 -3.5706 1.4713 15 7 5.9561 -3.8729 0.3709 16 6 5.6101 -5.0972 -0.0739 17 8 4.4549 -5.4611 -0.0115 18 6 6.6589 -6.0141 -0.6487 19 1 7.4696 -6.1659 0.0639 20 6 7.2017 -5.4561 -1.9857 21 6 7.4133 -6.7277 -2.7900 22 6 8.1262 -6.9845 -3.9411 23 6 8.1695 -8.2674 -4.4567 24 6 7.4959 -9.2894 -3.8130 25 6 6.7773 -9.0342 -2.6616 26 9 6.1221 -10.0390 -2.0401 27 6 6.7254 -7.7421 -2.1390 28 8 6.0793 -7.2714 -1.0363 29 6 4.2503 -2.2143 -0.2042 30 1 -0.4851 -0.8367 -0.0739 31 1 4.5569 0.3873 0.9048 32 1 3.0129 0.2939 1.7906 33 1 3.7917 -1.6829 3.0237 34 1 4.9969 -0.3841 3.1966 35 1 6.1072 -2.5313 2.6819 36 1 6.3200 -1.3818 1.3399 37 1 6.8800 -3.5818 0.3208 38 1 6.4662 -4.8104 -2.4655 39 1 8.1423 -4.9267 -1.8336 40 1 8.6511 -6.1838 -4.4410 41 1 8.7274 -8.4701 -5.3589 42 1 7.5317 -10.2920 -4.2130 43 1 3.6955 -2.9106 -0.8331 44 1 4.9995 -1.6975 -0.8040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009583248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:31 Heat of formation + Delta-G solvation = -58.963233 kcal Electronic energy + Delta-G solvation = -28586.756562 eV Core-core repulsion = 24419.711596 eV Total energy + Delta-G solvation = -4167.044966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.05085 -41.67527 -39.62018 -37.93929 -37.31346 -34.59124 -33.12143 -32.48239 -30.78875 -30.56664 -30.10310 -28.81015 -25.06348 -25.01457 -23.03995 -22.50152 -22.18494 -21.75393 -20.46039 -19.73670 -18.15509 -17.79554 -17.52755 -17.29779 -17.08544 -16.02689 -15.88492 -15.51131 -15.33148 -15.17439 -14.54884 -14.42492 -14.08416 -13.73074 -13.62382 -13.55597 -13.47881 -13.18895 -13.02121 -12.89626 -12.42747 -12.30831 -12.16688 -12.13202 -11.75658 -11.60352 -11.43355 -11.14786 -10.94739 -10.66300 -10.13983 -9.92393 -9.77393 -9.62416 -9.18392 -9.17272 -9.06733 -8.55736 -8.46169 -7.05727 -6.22846 -3.35015 0.68305 0.78684 2.32285 2.50913 3.06602 3.29650 3.37508 3.51493 3.67625 3.79638 3.91473 4.14970 4.41997 4.46817 4.57551 4.62061 4.75604 4.78202 4.89982 5.02360 5.10397 5.18505 5.23555 5.31619 5.39579 5.50144 5.51025 5.66343 5.75963 5.79386 5.87863 5.91092 5.96858 6.06422 6.13877 6.27121 6.36180 6.40546 6.56047 6.63081 6.69565 6.71867 6.88203 7.46203 8.05902 8.18350 8.46038 9.08312 9.58866 10.19951 11.15229 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002566 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.255659 B =10909.886837 C =11123.558874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.300 1.300 7 C -0.344 4.344 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.090 0.910 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.505 6.505 18 C 0.063 3.937 19 H 0.114 0.886 20 C -0.099 4.099 21 C -0.145 4.145 22 C -0.077 4.077 23 C -0.120 4.120 24 C -0.120 4.120 25 C 0.084 3.916 26 F -0.134 7.134 27 C 0.075 3.925 28 O -0.264 6.264 29 C 0.142 3.858 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.062 0.938 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.248 -12.717 -4.780 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.227 1.227 7 C -0.473 4.473 8 H 0.083 0.917 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.108 0.892 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.379 6.379 18 C 0.003 3.997 19 H 0.132 0.868 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.096 4.096 23 C -0.138 4.138 24 C -0.139 4.139 25 C 0.064 3.936 26 F -0.112 7.112 27 C 0.028 3.972 28 O -0.177 6.177 29 C 0.015 3.985 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.081 0.919 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 22.920 -11.491 -4.520 26.035 hybrid contribution 0.600 -1.707 0.030 1.810 sum 23.520 -13.198 -4.489 27.341 Atomic orbital electron populations 1.70878 1.06043 1.30100 1.49072 1.26276 0.96648 1.01250 0.97540 0.83715 0.74605 0.75640 0.75937 1.22115 1.21214 1.22742 1.20262 0.85412 0.95148 1.46461 0.91701 1.44283 1.07149 1.36990 1.44009 1.21533 0.97259 0.92318 0.89392 1.22081 0.97655 0.98618 0.98851 1.21673 0.98392 0.97230 0.98008 1.21795 0.89533 0.90318 0.96285 0.89218 1.45964 1.12370 1.14925 1.63638 1.19873 0.89132 0.82278 0.79084 1.90824 1.19348 1.74323 1.53357 1.23275 0.95019 0.83431 0.97969 0.86827 1.21861 1.03567 0.95919 0.92226 1.20691 1.01828 0.94064 0.97976 1.20408 0.97807 0.97390 0.93958 1.20919 1.00530 0.91815 1.00530 1.20936 0.97831 1.01482 0.93653 1.16967 0.99846 0.81396 0.95356 1.91523 1.79137 1.58666 1.81889 1.19600 0.95185 0.92765 0.89626 1.87056 1.53806 1.35068 1.41741 1.21231 0.92661 0.91832 0.92804 0.92594 0.95463 0.90589 0.91545 0.92099 0.92403 0.91932 0.77002 0.87751 0.87434 0.84722 0.84220 0.83714 0.91919 0.96083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.08 13.70 55.49 0.76 -28.32 16 2 C -0.02 -0.46 5.24 -17.43 -0.09 -0.55 16 3 Si 1.07 26.34 24.73 -169.99 -4.20 22.14 16 4 H -0.29 -6.70 6.56 56.52 0.37 -6.33 16 5 H -0.29 -6.66 6.80 56.52 0.38 -6.28 16 6 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 7 C -0.34 -9.94 9.88 -15.06 -0.15 -10.09 16 8 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 9 N -0.60 -14.49 2.72 -172.05 -0.47 -14.96 16 10 C 0.12 2.53 4.23 -3.48 -0.01 2.52 16 11 C -0.13 -2.19 6.10 -26.38 -0.16 -2.35 16 12 C -0.11 -1.60 5.35 -26.69 -0.14 -1.74 16 13 C 0.13 2.07 2.60 -67.81 -0.18 1.90 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.72 -8.94 5.08 -53.69 -0.27 -9.21 16 16 C 0.51 7.56 7.09 -10.99 -0.08 7.49 16 17 O -0.51 -10.44 16.24 -13.51 -0.22 -10.66 16 18 C 0.06 0.70 4.04 -26.98 -0.11 0.59 16 19 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.10 -0.84 6.66 -26.37 -0.18 -1.02 16 21 C -0.14 -1.40 6.28 -103.96 -0.65 -2.05 16 22 C -0.08 -0.56 10.03 -39.71 -0.40 -0.96 16 23 C -0.12 -0.79 10.07 -39.53 -0.40 -1.19 16 24 C -0.12 -0.98 9.99 -39.61 -0.40 -1.38 16 25 C 0.08 0.98 7.32 -39.17 -0.29 0.70 16 26 F -0.13 -1.78 17.27 2.25 0.04 -1.74 16 27 C 0.07 0.94 7.02 -38.92 -0.27 0.67 16 28 O -0.26 -3.94 10.39 -39.44 -0.41 -4.35 16 29 C 0.14 2.91 6.09 -3.71 -0.02 2.88 16 30 H 0.26 8.33 8.73 -40.82 -0.36 7.97 16 31 H 0.03 0.55 7.10 -51.93 -0.37 0.18 16 32 H 0.08 1.75 4.76 -51.93 -0.25 1.51 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 3.26 8.60 -40.82 -0.35 2.91 16 38 H 0.10 1.00 7.92 -51.93 -0.41 0.59 16 39 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -36.86 360.42 -8.90 -45.76 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.03 Total: 0.52 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.52 Total: -4.58 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.02 Total: -52.50 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.63 Total: -15.01 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -4.20 Total: 22.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.86 -8.90 -45.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009583248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.206 kcal (2) G-P(sol) polarization free energy of solvation -36.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds