Wall clock time and date at job start Tue Mar 31 2020 18:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00287 * 2 1 4 4 H 1.48499 * 109.47303 * 90.00201 * 3 2 1 5 5 H 1.48510 * 109.47017 * 210.00012 * 3 2 1 6 6 H 1.48507 * 109.47212 * 329.99874 * 3 2 1 7 7 C 1.38818 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99839 * 18.71627 * 7 2 1 9 9 N 1.36933 * 120.00011 * 198.72795 * 7 2 1 10 10 C 1.46930 * 120.62979 * 30.80696 * 9 7 2 11 11 C 1.53631 * 108.54158 * 126.37366 * 10 9 7 12 12 C 1.53037 * 109.24307 * 54.85694 * 11 10 9 13 13 C 1.53045 * 109.53581 * 298.51127 * 12 11 10 14 14 H 1.09001 * 109.52343 * 301.39431 * 13 12 11 15 15 N 1.46504 * 109.49726 * 181.31694 * 13 12 11 16 16 C 1.34773 * 119.99781 * 155.15809 * 15 13 12 17 17 O 1.21282 * 120.00370 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99875 * 180.02562 * 16 15 13 19 19 H 1.09003 * 110.67088 * 55.69997 * 18 16 15 20 20 C 1.54712 * 110.75391 * 292.48254 * 18 16 15 21 21 C 1.51942 * 101.79971 * 216.52543 * 20 18 16 22 22 C 1.37812 * 132.08289 * 195.80378 * 21 20 18 23 23 C 1.38321 * 120.02412 * 178.82563 * 22 21 20 24 24 C 1.38293 * 119.78090 * 359.97438 * 23 22 21 25 25 C 1.38099 * 120.32705 * 0.22542 * 24 23 22 26 26 F 1.35101 * 119.90079 * 179.97438 * 25 24 23 27 27 C 1.38782 * 107.11892 * 15.12170 * 21 20 18 28 28 O 1.36198 * 111.24506 * 1.26173 * 27 21 20 29 29 C 1.46928 * 120.63112 * 211.08933 * 9 7 2 30 30 H 0.96998 * 120.00613 * 174.95420 * 1 2 3 31 31 H 1.09002 * 109.58504 * 246.20331 * 10 9 7 32 32 H 1.08995 * 109.58550 * 6.63077 * 10 9 7 33 33 H 1.08996 * 109.62893 * 294.86031 * 11 10 9 34 34 H 1.09000 * 109.45467 * 174.73724 * 11 10 9 35 35 H 1.08999 * 109.46154 * 178.49503 * 12 11 10 36 36 H 1.08993 * 109.45032 * 58.52143 * 12 11 10 37 37 H 0.96999 * 120.00083 * 335.16673 * 15 13 12 38 38 H 1.08999 * 110.93307 * 334.56373 * 20 18 16 39 39 H 1.08993 * 110.93927 * 98.23887 * 20 18 16 40 40 H 1.08006 * 119.98748 * 358.80575 * 22 21 20 41 41 H 1.07997 * 120.10599 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.83804 * 180.19848 * 24 23 22 43 43 H 1.09003 * 109.58427 * 353.37489 * 29 9 7 44 44 H 1.09005 * 109.58493 * 113.65112 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5478 1.4400 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.5130 -2.1126 -0.3011 9 7 3.3252 -1.2338 0.3802 10 6 3.8391 -0.2839 1.3763 11 6 4.5288 -1.0767 2.4971 12 6 5.5973 -1.9868 1.8872 13 6 4.9366 -2.9817 0.9302 14 1 4.1959 -3.5706 1.4713 15 7 5.9561 -3.8729 0.3709 16 6 5.6101 -5.0972 -0.0739 17 8 4.4549 -5.4611 -0.0115 18 6 6.6589 -6.0141 -0.6487 19 1 7.4696 -6.1659 0.0639 20 6 7.2017 -5.4561 -1.9857 21 6 7.4133 -6.7277 -2.7900 22 6 8.1262 -6.9845 -3.9411 23 6 8.1695 -8.2674 -4.4567 24 6 7.4959 -9.2894 -3.8130 25 6 6.7773 -9.0342 -2.6616 26 9 6.1221 -10.0390 -2.0401 27 6 6.7254 -7.7421 -2.1390 28 8 6.0793 -7.2714 -1.0363 29 6 4.2503 -2.2143 -0.2042 30 1 -0.4851 -0.8367 -0.0739 31 1 4.5569 0.3873 0.9048 32 1 3.0129 0.2939 1.7906 33 1 3.7917 -1.6829 3.0237 34 1 4.9969 -0.3841 3.1966 35 1 6.1072 -2.5313 2.6819 36 1 6.3200 -1.3818 1.3399 37 1 6.8800 -3.5818 0.3208 38 1 6.4662 -4.8104 -2.4655 39 1 8.1423 -4.9267 -1.8336 40 1 8.6511 -6.1838 -4.4410 41 1 8.7274 -8.4701 -5.3589 42 1 7.5317 -10.2920 -4.2130 43 1 3.6955 -2.9106 -0.8331 44 1 4.9995 -1.6975 -0.8040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009583248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:31 Heat of formation + Delta-G solvation = -86.137755 kcal Electronic energy + Delta-G solvation = -28587.934938 eV Core-core repulsion = 24419.711596 eV Total energy + Delta-G solvation = -4168.223342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.95095 -42.52702 -40.83179 -39.21231 -38.31831 -36.14313 -34.55518 -33.65160 -32.61479 -31.56450 -30.87409 -29.95679 -26.93428 -25.94736 -24.07615 -23.56295 -23.49658 -22.88632 -21.67580 -21.28503 -19.42685 -19.00300 -18.65096 -18.46563 -17.87262 -17.26347 -16.95894 -16.66123 -16.52121 -16.18475 -15.91076 -15.70498 -15.46593 -15.36369 -14.93245 -14.56254 -14.44209 -14.27852 -14.11322 -14.01066 -13.81821 -13.70495 -13.42634 -13.05076 -12.79235 -12.74235 -12.56275 -12.41860 -12.14605 -12.05213 -11.74348 -11.56822 -11.37825 -11.28231 -11.04229 -10.71599 -10.29294 -9.84351 -9.32001 -9.14613 -8.52530 -5.64328 0.03650 0.09190 1.31649 1.40949 1.44096 1.57295 1.75752 2.28742 2.49521 2.53148 3.03695 3.06518 3.15985 3.34539 3.47153 3.67522 3.80360 3.82319 3.86897 4.01082 4.09248 4.13074 4.21043 4.30322 4.33404 4.39391 4.58109 4.65605 4.67187 4.69816 4.89241 4.90397 4.99184 5.02193 5.03727 5.07426 5.19127 5.22228 5.29070 5.31307 5.44586 5.50848 5.71643 5.96641 6.19178 6.42492 6.88890 7.11513 7.49755 8.01434 8.77687 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002566 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.255659 B =10909.886837 C =11123.558874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 1.118 2.882 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.308 1.308 7 C -0.338 4.338 8 H 0.007 0.993 9 N -0.619 5.619 10 C 0.110 3.890 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.137 3.863 14 H 0.043 0.957 15 N -0.690 5.690 16 C 0.510 3.490 17 O -0.580 6.580 18 C 0.065 3.935 19 H 0.154 0.846 20 C -0.089 4.089 21 C -0.148 4.148 22 C -0.070 4.070 23 C -0.106 4.106 24 C -0.118 4.118 25 C 0.047 3.953 26 F -0.156 7.156 27 C 0.034 3.966 28 O -0.313 6.313 29 C 0.144 3.856 30 H 0.243 0.757 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.425 0.575 38 H 0.089 0.911 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.167 0.833 43 H 0.015 0.985 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.608 -10.748 -5.417 32.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.266 4.266 3 Si 0.941 3.059 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.237 1.237 7 C -0.467 4.467 8 H 0.025 0.975 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.141 4.141 13 C 0.031 3.969 14 H 0.061 0.939 15 N -0.344 5.344 16 C 0.296 3.704 17 O -0.458 6.458 18 C 0.006 3.994 19 H 0.171 0.829 20 C -0.126 4.126 21 C -0.149 4.149 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.137 4.137 25 C 0.027 3.973 26 F -0.135 7.135 27 C -0.012 4.012 28 O -0.227 6.227 29 C 0.017 3.983 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.264 0.736 38 H 0.107 0.893 39 H 0.177 0.823 40 H 0.189 0.811 41 H 0.198 0.802 42 H 0.184 0.816 43 H 0.033 0.967 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 29.393 -9.542 -5.139 31.327 hybrid contribution -1.388 -2.480 0.134 2.845 sum 28.005 -12.022 -5.005 30.884 Atomic orbital electron populations 1.71022 1.07525 1.28850 1.52393 1.27840 0.96449 1.05404 0.96949 0.83151 0.74196 0.70597 0.77939 1.18576 1.18163 1.23712 1.20018 0.88007 0.93151 1.45572 0.97469 1.44349 1.05845 1.38600 1.45691 1.21749 0.97294 0.92373 0.89994 1.22019 0.97836 0.99079 0.97835 1.21655 0.97806 0.96374 0.98282 1.21339 0.89998 0.90524 0.95051 0.93851 1.45606 1.12961 1.13616 1.62235 1.20715 0.88967 0.82957 0.77793 1.90801 1.22788 1.75915 1.56333 1.23472 0.93865 0.81842 1.00210 0.82864 1.21938 1.05187 0.95427 0.90006 1.20961 1.01705 0.93455 0.98743 1.20904 0.96497 0.98702 0.92624 1.21457 0.99036 0.90935 1.00930 1.21309 0.96783 1.03306 0.92257 1.17595 1.01570 0.81100 0.97038 1.91451 1.79943 1.59528 1.82596 1.19996 0.96997 0.94057 0.90141 1.86981 1.55789 1.36676 1.43213 1.21280 0.92221 0.90788 0.94005 0.94794 0.92545 0.93029 0.94155 0.87824 0.88945 0.88330 0.73581 0.89273 0.82339 0.81070 0.80238 0.81592 0.96658 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.71 13.70 21.65 0.30 -63.42 16 2 C -0.07 -4.45 5.24 84.86 0.44 -4.01 16 3 Si 1.12 52.63 24.73 68.60 1.70 54.32 16 4 H -0.26 -10.83 6.56 99.48 0.65 -10.17 16 5 H -0.26 -10.80 6.80 99.48 0.68 -10.12 16 6 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 7 C -0.34 -20.71 9.88 84.04 0.83 -19.88 16 8 H 0.01 0.52 8.06 -2.91 -0.02 0.50 16 9 N -0.62 -30.28 2.72 -698.23 -1.90 -32.18 16 10 C 0.11 4.34 4.23 86.51 0.37 4.70 16 11 C -0.13 -3.81 6.10 30.82 0.19 -3.62 16 12 C -0.10 -2.39 5.35 30.62 0.16 -2.23 16 13 C 0.14 4.42 2.60 45.07 0.12 4.54 16 14 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 15 N -0.69 -15.89 5.08 -442.16 -2.25 -18.13 16 16 C 0.51 15.30 7.09 87.66 0.62 15.93 16 17 O -0.58 -26.15 16.24 15.19 0.25 -25.91 16 18 C 0.07 1.39 4.04 30.43 0.12 1.52 16 19 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 20 C -0.09 -1.27 6.66 30.83 0.21 -1.06 16 21 C -0.15 -2.54 6.28 -19.44 -0.12 -2.66 16 22 C -0.07 -0.72 10.03 22.19 0.22 -0.50 16 23 C -0.11 -0.98 10.07 22.30 0.22 -0.75 16 24 C -0.12 -1.74 9.99 22.25 0.22 -1.52 16 25 C 0.05 1.13 7.32 22.54 0.16 1.29 16 26 F -0.16 -4.55 17.27 44.97 0.78 -3.78 16 27 C 0.03 0.87 7.02 22.70 0.16 1.03 16 28 O -0.31 -9.89 10.39 -77.58 -0.81 -10.70 16 29 C 0.14 5.93 6.09 86.36 0.53 6.45 16 30 H 0.24 16.64 8.73 -92.71 -0.81 15.83 16 31 H 0.06 1.94 7.10 -2.39 -0.02 1.93 16 32 H 0.05 2.28 4.76 -2.39 -0.01 2.27 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.43 4.95 8.60 -92.71 -0.80 4.15 16 38 H 0.09 1.57 7.92 -2.39 -0.02 1.55 16 39 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.01 0.74 7.93 -2.39 -0.02 0.72 16 44 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -95.40 360.42 2.64 -92.76 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.12 Total: 7.82 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.46 Total: -0.79 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -3.85 Total: -113.73 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.56 Total: -36.60 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 1.70 Total: 54.32 kcal Total: -95.40 2.64 -92.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009583248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.626 kcal (2) G-P(sol) polarization free energy of solvation -95.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds