Wall clock time and date at job start Tue Mar 31 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09000 * 111.03743 * 153.59413 * 12 11 10 14 14 N 1.46505 * 111.00361 * 277.42908 * 12 11 10 15 15 C 1.34777 * 119.99714 * 198.65008 * 14 12 11 16 16 O 1.21276 * 120.00134 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99687 * 179.97438 * 15 14 12 18 18 H 1.08996 * 109.70126 * 299.43941 * 17 15 14 19 19 C 1.53410 * 109.69781 * 60.00273 * 17 15 14 20 20 O 1.42818 * 108.38173 * 184.43862 * 19 17 15 21 21 C 1.35846 * 117.87672 * 310.89607 * 20 19 17 22 22 C 1.39107 * 118.47778 * 196.99900 * 21 20 19 23 23 C 1.38186 * 120.20168 * 180.20968 * 22 21 20 24 24 F 1.35097 * 120.05246 * 179.97438 * 23 22 21 25 25 C 1.38521 * 119.90329 * 359.97438 * 23 22 21 26 26 C 1.38065 * 119.95504 * 359.92129 * 25 23 22 27 27 C 1.38396 * 121.80346 * 17.05585 * 21 20 19 28 28 C 1.50769 * 121.40026 * 359.65139 * 27 21 20 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 0.97002 * 120.00176 * 18.64700 * 14 12 11 36 36 H 1.08999 * 109.68351 * 304.16354 * 19 17 15 37 37 H 1.08995 * 109.68348 * 64.67902 * 19 17 15 38 38 H 1.08006 * 119.90022 * 0.19837 * 22 21 20 39 39 H 1.08004 * 120.02329 * 179.97438 * 25 23 22 40 40 H 1.07996 * 119.82607 * 180.02562 * 26 25 23 41 41 H 1.09000 * 109.43672 * 257.73603 * 28 27 21 42 42 H 1.09004 * 109.44518 * 137.85799 * 28 27 21 43 43 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 44 44 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.9879 -5.6872 -0.2805 14 7 0.8605 -4.5765 -2.0759 15 6 1.6904 -5.3620 -2.7906 16 8 2.4312 -6.1365 -2.2229 17 6 1.6969 -5.2788 -4.2954 18 1 0.7105 -5.5350 -4.6818 19 6 2.0703 -3.8567 -4.7329 20 8 1.9670 -3.7814 -6.1554 21 6 2.5693 -4.7538 -6.8883 22 6 2.7933 -4.5218 -8.2415 23 6 3.3994 -5.4881 -9.0215 24 9 3.6150 -5.2598 -10.3354 25 6 3.7856 -6.6913 -8.4541 26 6 3.5658 -6.9221 -7.1107 27 6 2.9590 -5.9562 -6.3247 28 6 2.7406 -6.2450 -4.8611 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5599 -2.0893 0.9002 33 1 -1.2974 -4.2573 -0.6785 34 1 -0.6320 -4.4259 0.9776 35 1 0.2677 -3.9574 -2.5300 36 1 1.3866 -3.1407 -4.2768 37 1 3.0924 -3.6347 -4.4263 38 1 2.4924 -3.5835 -8.6839 39 1 4.2590 -7.4481 -9.0620 40 1 3.8681 -7.8608 -6.6705 41 1 3.6801 -6.1201 -4.3226 42 1 2.3885 -7.2697 -4.7421 43 1 2.1668 -4.0420 1.0178 44 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014424099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:06 Heat of formation + Delta-G solvation = -70.639061 kcal Electronic energy + Delta-G solvation = -28672.734737 eV Core-core repulsion = 24505.183469 eV Total energy + Delta-G solvation = -4167.551268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.15056 -41.16602 -39.57562 -37.61854 -37.29551 -34.30719 -33.86349 -31.97074 -30.74683 -30.56065 -29.20544 -27.33996 -25.87087 -24.89733 -24.22248 -23.18549 -21.51614 -20.25538 -20.06689 -19.67585 -18.56086 -17.73140 -17.10151 -16.86818 -16.27178 -15.96617 -15.83256 -15.54754 -15.23224 -14.89536 -14.72884 -14.63189 -14.10372 -13.96601 -13.76313 -13.60699 -13.29932 -13.26768 -13.06931 -12.41623 -12.01714 -11.93247 -11.90759 -11.75298 -11.46389 -11.06977 -11.01348 -10.93624 -10.88026 -10.75332 -10.42585 -10.21286 -10.05361 -9.73625 -9.67131 -9.03571 -8.83985 -8.60512 -8.46850 -6.88509 -5.77681 -3.10441 0.82641 0.99000 2.64539 2.88023 3.23849 3.33929 3.37237 3.42295 3.42708 4.09213 4.28427 4.38144 4.42830 4.45615 4.59983 4.72864 4.79443 4.93642 5.10108 5.17174 5.24495 5.32196 5.38051 5.40533 5.42406 5.64130 5.68746 5.70015 5.75239 5.79041 5.85600 5.90463 6.09948 6.12717 6.28616 6.40898 6.42146 6.43318 6.62036 6.92650 7.10179 7.46114 7.48406 7.69994 7.74112 8.18336 8.34473 9.15908 9.76041 10.41726 11.34297 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002925 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.450716 B = 9570.798494 C =10914.841184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.088 0.912 14 N -0.701 5.701 15 C 0.523 3.477 16 O -0.541 6.541 17 C -0.147 4.147 18 H 0.111 0.889 19 C 0.072 3.928 20 O -0.304 6.304 21 C 0.161 3.839 22 C -0.186 4.186 23 C 0.128 3.872 24 F -0.137 7.137 25 C -0.186 4.186 26 C -0.054 4.054 27 C -0.165 4.165 28 C -0.057 4.057 29 C 0.126 3.874 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.027 0.973 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -13.850 -13.831 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.050 3.950 11 C -0.192 4.192 12 C 0.023 3.977 13 H 0.106 0.894 14 N -0.351 5.351 15 C 0.307 3.693 16 O -0.419 6.419 17 C -0.169 4.169 18 H 0.129 0.871 19 C -0.003 4.003 20 O -0.217 6.217 21 C 0.115 3.885 22 C -0.205 4.205 23 C 0.108 3.892 24 F -0.115 7.115 25 C -0.205 4.205 26 C -0.072 4.072 27 C -0.166 4.166 28 C -0.094 4.094 29 C -0.001 4.001 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.261 -13.975 -13.500 19.562 hybrid contribution 0.206 1.226 -0.253 1.269 sum 2.467 -12.749 -13.753 18.915 Atomic orbital electron populations 1.69926 1.04820 1.25181 1.57158 1.24765 0.95710 0.97574 1.02261 0.86219 0.78487 0.83239 0.77941 1.21184 1.21592 1.21203 1.18992 0.90365 0.82355 1.43797 0.90619 1.44515 1.01373 0.99815 1.87312 1.21212 0.84596 0.87828 1.01321 1.23216 0.95526 1.00091 1.00366 1.22166 0.97652 0.99291 0.78608 0.89433 1.45890 1.40952 1.40702 1.07537 1.20001 0.80293 0.80640 0.88319 1.90690 1.40381 1.38732 1.72067 1.22018 1.02650 0.98042 0.94176 0.87081 1.23070 1.04121 0.95708 0.77448 1.86060 1.70325 1.45910 1.19399 1.18350 0.92366 0.87349 0.90426 1.20425 1.06241 1.01399 0.92445 1.17238 0.99392 0.94579 0.77956 1.91509 1.92725 1.94968 1.32320 1.20997 1.06179 0.97053 0.96276 1.20741 0.95621 0.98579 0.92253 1.19965 1.05140 0.94220 0.97284 1.20299 0.99699 0.99691 0.89755 1.21919 0.94719 0.86379 0.97117 0.93702 0.93568 0.93729 0.91565 0.90853 0.76280 0.85996 0.90413 0.83863 0.84579 0.84523 0.88821 0.89144 0.95501 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.89 10.33 55.49 0.57 -25.32 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.08 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.45 3.40 -169.86 -0.58 -15.02 16 10 C 0.18 3.87 5.38 -2.92 -0.02 3.85 16 11 C -0.15 -2.52 6.52 -24.90 -0.16 -2.68 16 12 C 0.13 2.11 3.32 -65.78 -0.22 1.89 16 13 H 0.09 1.39 7.73 -51.93 -0.40 0.99 16 14 N -0.70 -10.19 5.10 -51.73 -0.26 -10.45 16 15 C 0.52 7.40 7.16 -10.98 -0.08 7.33 16 16 O -0.54 -9.30 15.55 5.56 0.09 -9.21 16 17 C -0.15 -1.65 2.76 -91.52 -0.25 -1.90 16 18 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 19 C 0.07 0.85 6.25 37.37 0.23 1.08 16 20 O -0.30 -3.78 10.27 -19.26 -0.20 -3.98 16 21 C 0.16 1.89 6.47 -39.20 -0.25 1.63 16 22 C -0.19 -2.06 9.91 -39.28 -0.39 -2.45 16 23 C 0.13 1.34 7.30 -39.50 -0.29 1.05 16 24 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 25 C -0.19 -1.67 10.03 -39.54 -0.40 -2.07 16 26 C -0.05 -0.48 9.66 -39.54 -0.38 -0.86 16 27 C -0.17 -1.74 5.75 -104.42 -0.60 -2.34 16 28 C -0.06 -0.61 4.65 -27.81 -0.13 -0.74 16 29 C 0.13 2.54 6.92 -2.53 -0.02 2.52 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.05 1.11 7.39 -51.93 -0.38 0.72 16 32 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 5.42 8.02 -40.82 -0.33 5.09 16 36 H 0.12 1.41 7.50 -51.93 -0.39 1.02 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.09 1.10 7.71 -51.93 -0.40 0.69 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -30.63 363.81 -9.15 -39.78 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.07 Total: 3.80 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.20 Total: -0.20 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.27 Total: -50.79 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.11 Total: -13.19 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.63 -9.15 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014424099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.862 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds