Wall clock time and date at job start Tue Mar 31 2020 18:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09000 * 111.03743 * 153.59413 * 12 11 10 14 14 N 1.46505 * 111.00361 * 277.42908 * 12 11 10 15 15 C 1.34777 * 119.99714 * 198.65008 * 14 12 11 16 16 O 1.21276 * 120.00134 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99687 * 179.97438 * 15 14 12 18 18 H 1.08996 * 109.70126 * 299.43941 * 17 15 14 19 19 C 1.53410 * 109.69781 * 60.00273 * 17 15 14 20 20 O 1.42818 * 108.38173 * 184.43862 * 19 17 15 21 21 C 1.35846 * 117.87672 * 310.89607 * 20 19 17 22 22 C 1.39107 * 118.47778 * 196.99900 * 21 20 19 23 23 C 1.38186 * 120.20168 * 180.20968 * 22 21 20 24 24 F 1.35097 * 120.05246 * 179.97438 * 23 22 21 25 25 C 1.38521 * 119.90329 * 359.97438 * 23 22 21 26 26 C 1.38065 * 119.95504 * 359.92129 * 25 23 22 27 27 C 1.38396 * 121.80346 * 17.05585 * 21 20 19 28 28 C 1.50769 * 121.40026 * 359.65139 * 27 21 20 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 0.97002 * 120.00176 * 18.64700 * 14 12 11 36 36 H 1.08999 * 109.68351 * 304.16354 * 19 17 15 37 37 H 1.08995 * 109.68348 * 64.67902 * 19 17 15 38 38 H 1.08006 * 119.90022 * 0.19837 * 22 21 20 39 39 H 1.08004 * 120.02329 * 179.97438 * 25 23 22 40 40 H 1.07996 * 119.82607 * 180.02562 * 26 25 23 41 41 H 1.09000 * 109.43672 * 257.73603 * 28 27 21 42 42 H 1.09004 * 109.44518 * 137.85799 * 28 27 21 43 43 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 44 44 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.9879 -5.6872 -0.2805 14 7 0.8605 -4.5765 -2.0759 15 6 1.6904 -5.3620 -2.7906 16 8 2.4312 -6.1365 -2.2229 17 6 1.6969 -5.2788 -4.2954 18 1 0.7105 -5.5350 -4.6818 19 6 2.0703 -3.8567 -4.7329 20 8 1.9670 -3.7814 -6.1554 21 6 2.5693 -4.7538 -6.8883 22 6 2.7933 -4.5218 -8.2415 23 6 3.3994 -5.4881 -9.0215 24 9 3.6150 -5.2598 -10.3354 25 6 3.7856 -6.6913 -8.4541 26 6 3.5658 -6.9221 -7.1107 27 6 2.9590 -5.9562 -6.3247 28 6 2.7406 -6.2450 -4.8611 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5599 -2.0893 0.9002 33 1 -1.2974 -4.2573 -0.6785 34 1 -0.6320 -4.4259 0.9776 35 1 0.2677 -3.9574 -2.5300 36 1 1.3866 -3.1407 -4.2768 37 1 3.0924 -3.6347 -4.4263 38 1 2.4924 -3.5835 -8.6839 39 1 4.2590 -7.4481 -9.0620 40 1 3.8681 -7.8608 -6.6705 41 1 3.6801 -6.1201 -4.3226 42 1 2.3885 -7.2697 -4.7421 43 1 2.1668 -4.0420 1.0178 44 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014424099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:05 Heat of formation + Delta-G solvation = -88.808912 kcal Electronic energy + Delta-G solvation = -28673.522641 eV Core-core repulsion = 24505.183469 eV Total energy + Delta-G solvation = -4168.339172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.96713 -42.08830 -40.74861 -38.90487 -38.36392 -35.43691 -35.24859 -33.63818 -31.64740 -31.49494 -30.83595 -28.92663 -26.76678 -26.52249 -25.44256 -23.98687 -22.61284 -21.93830 -21.36705 -20.79290 -19.40936 -19.01284 -18.51239 -18.03225 -17.26627 -17.09778 -16.75172 -16.63251 -16.46168 -16.10171 -15.91966 -15.71960 -15.67021 -15.21241 -14.89856 -14.61229 -14.46475 -14.19538 -13.99550 -13.83183 -13.79012 -13.56895 -12.89519 -12.79746 -12.73592 -12.60298 -12.31100 -12.24644 -12.10737 -12.04564 -11.95222 -11.78747 -11.69873 -11.60172 -10.87936 -10.70482 -10.07695 -9.82198 -9.28821 -8.84899 -7.84595 -5.17915 0.03439 0.21422 1.46640 1.47767 1.51481 1.54228 1.97522 2.17532 2.49603 2.50669 3.30724 3.34653 3.38086 3.47928 3.56845 3.68475 3.73817 3.81175 3.93486 4.00222 4.09663 4.11224 4.27063 4.33632 4.38053 4.44121 4.49540 4.70194 4.76601 4.84938 4.91165 4.92712 5.00982 5.01892 5.03075 5.06061 5.15511 5.34834 5.45554 5.56671 5.66557 5.69022 5.78956 6.20944 6.23897 6.54218 7.12699 7.18825 7.78589 8.42701 9.25152 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002925 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.450716 B = 9570.798494 C =10914.841184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.619 5.619 10 C 0.182 3.818 11 C -0.133 4.133 12 C 0.143 3.857 13 H 0.104 0.896 14 N -0.700 5.700 15 C 0.527 3.473 16 O -0.569 6.569 17 C -0.135 4.135 18 H 0.132 0.868 19 C 0.074 3.926 20 O -0.315 6.315 21 C 0.140 3.860 22 C -0.197 4.197 23 C 0.117 3.883 24 F -0.141 7.141 25 C -0.178 4.178 26 C -0.049 4.049 27 C -0.168 4.168 28 C -0.053 4.053 29 C 0.122 3.878 30 H 0.247 0.753 31 H 0.022 0.978 32 H 0.007 0.993 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.409 0.591 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.029 0.971 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -15.820 -14.732 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.346 5.346 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.037 3.963 13 H 0.122 0.878 14 N -0.350 5.350 15 C 0.313 3.687 16 O -0.448 6.448 17 C -0.157 4.157 18 H 0.150 0.850 19 C -0.001 4.001 20 O -0.229 6.229 21 C 0.094 3.906 22 C -0.216 4.216 23 C 0.098 3.902 24 F -0.120 7.120 25 C -0.196 4.196 26 C -0.066 4.066 27 C -0.169 4.169 28 C -0.090 4.090 29 C -0.004 4.004 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.046 0.954 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.475 -15.966 -14.418 21.655 hybrid contribution 0.212 1.809 0.010 1.821 sum 2.687 -14.157 -14.408 20.378 Atomic orbital electron populations 1.70120 1.05860 1.25245 1.58136 1.25467 0.96538 1.00359 1.02687 0.85287 0.77280 0.79560 0.78000 1.20543 1.21928 1.20862 1.19278 0.90630 0.83847 1.43130 0.90949 1.44734 1.02404 1.00445 1.87037 1.21008 0.83374 0.91528 0.98335 1.23066 0.96486 0.95425 1.02206 1.21959 0.95817 0.98957 0.79579 0.87796 1.45879 1.41285 1.40964 1.06855 1.20402 0.79233 0.79675 0.89359 1.90679 1.41337 1.39912 1.72901 1.21954 1.04079 0.97826 0.91817 0.85028 1.22984 1.03422 0.96165 0.77553 1.86041 1.70808 1.46617 1.19401 1.18535 0.93562 0.87827 0.90657 1.20520 1.06699 1.01853 0.92542 1.17418 0.99818 0.95204 0.77809 1.91497 1.92796 1.95072 1.32618 1.21311 1.05016 0.96754 0.96563 1.21067 0.94417 0.99132 0.92034 1.20044 1.05358 0.94185 0.97304 1.20271 0.98895 1.00218 0.89615 1.22050 0.95428 0.85640 0.97304 0.94375 0.95989 0.97478 0.88574 0.89210 0.75561 0.86143 0.91584 0.83899 0.82058 0.81679 0.90023 0.87675 0.95372 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.19 10.33 21.65 0.22 -53.97 16 2 C -0.06 -3.14 5.49 84.86 0.47 -2.67 16 3 Si 0.97 44.94 29.55 68.60 2.03 46.96 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.24 -13.06 10.28 84.03 0.86 -12.20 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.62 -30.00 3.40 -691.30 -2.35 -32.35 16 10 C 0.18 8.12 5.38 86.68 0.47 8.58 16 11 C -0.13 -4.12 6.52 31.78 0.21 -3.92 16 12 C 0.14 4.44 3.32 46.38 0.15 4.59 16 13 H 0.10 3.01 7.73 -2.39 -0.02 2.99 16 14 N -0.70 -19.26 5.10 -435.95 -2.22 -21.48 16 15 C 0.53 14.12 7.16 87.66 0.63 14.74 16 16 O -0.57 -18.68 15.55 -3.02 -0.05 -18.73 16 17 C -0.14 -2.82 2.76 -11.38 -0.03 -2.85 16 18 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 19 C 0.07 1.72 6.25 72.12 0.45 2.17 16 20 O -0.32 -7.76 10.27 -91.82 -0.94 -8.71 16 21 C 0.14 3.16 6.47 22.52 0.15 3.31 16 22 C -0.20 -4.26 9.91 22.47 0.22 -4.04 16 23 C 0.12 2.29 7.30 22.32 0.16 2.46 16 24 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 25 C -0.18 -2.72 10.03 22.30 0.22 -2.50 16 26 C -0.05 -0.73 9.66 22.30 0.22 -0.51 16 27 C -0.17 -3.23 5.75 -19.74 -0.11 -3.34 16 28 C -0.05 -1.02 4.65 29.89 0.14 -0.88 16 29 C 0.12 4.89 6.92 86.86 0.60 5.49 16 30 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.02 1.07 7.39 -2.38 -0.02 1.05 16 32 H 0.01 0.36 7.51 -2.39 -0.02 0.34 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.41 10.43 8.02 -92.71 -0.74 9.68 16 36 H 0.12 2.78 7.50 -2.39 -0.02 2.77 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.08 1.81 7.71 -2.39 -0.02 1.79 16 42 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.95 363.81 2.55 -64.40 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.29 Total: 17.58 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.80 Total: 8.44 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.35 Total: -107.80 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.99 Total: -27.43 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.95 2.55 -64.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014424099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.410 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds