Wall clock time and date at job start Tue Mar 31 2020 18:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00655 * 2 1 4 4 H 1.48497 * 109.47469 * 264.53901 * 3 2 1 5 5 H 1.48502 * 109.46676 * 24.53832 * 3 2 1 6 6 H 1.48500 * 109.47144 * 144.53235 * 3 2 1 7 7 C 1.38816 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00182 * 337.63392 * 7 2 1 9 9 N 1.36935 * 119.99992 * 157.63568 * 7 2 1 10 10 C 1.47429 * 125.64885 * 341.47482 * 9 7 2 11 11 C 1.54909 * 104.83392 * 204.16555 * 10 9 7 12 12 C 1.55166 * 101.58115 * 322.99241 * 11 10 9 13 13 H 1.09004 * 110.87057 * 277.06441 * 12 11 10 14 14 N 1.46496 * 110.72031 * 153.86555 * 12 11 10 15 15 C 1.34774 * 119.99885 * 160.02199 * 14 12 11 16 16 O 1.21275 * 120.00101 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99650 * 179.97438 * 15 14 12 18 18 H 1.09001 * 109.68129 * 55.52908 * 17 15 14 19 19 C 1.53401 * 109.68626 * 294.99871 * 17 15 14 20 20 C 1.53074 * 108.30404 * 175.52140 * 19 17 15 21 21 C 1.50777 * 109.68708 * 48.19464 * 20 19 17 22 22 C 1.38521 * 118.73470 * 162.35156 * 21 20 19 23 23 C 1.38066 * 120.35140 * 179.75859 * 22 21 20 24 24 C 1.38523 * 119.95199 * 359.95992 * 23 22 21 25 25 F 1.35109 * 120.04210 * 180.02562 * 24 23 22 26 26 C 1.38181 * 119.90795 * 0.07371 * 24 23 22 27 27 C 1.38398 * 121.39500 * 342.19529 * 21 20 19 28 28 O 1.35856 * 121.80472 * 0.48767 * 27 21 20 29 29 C 1.47028 * 125.65051 * 161.51662 * 9 7 2 30 30 H 0.97002 * 119.99654 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36388 * 323.00456 * 10 9 7 32 32 H 1.08999 * 110.36737 * 85.32867 * 10 9 7 33 33 H 1.08996 * 111.00528 * 204.91971 * 11 10 9 34 34 H 1.08998 * 111.00279 * 81.05964 * 11 10 9 35 35 H 0.97001 * 119.99979 * 340.01991 * 14 12 11 36 36 H 1.09004 * 109.69713 * 55.82130 * 19 17 15 37 37 H 1.09005 * 109.73299 * 295.24080 * 19 17 15 38 38 H 1.09004 * 109.43227 * 288.12898 * 20 19 17 39 39 H 1.09000 * 109.43791 * 168.26672 * 20 19 17 40 40 H 1.07997 * 119.82486 * 359.77859 * 22 21 20 41 41 H 1.07995 * 120.02239 * 179.68884 * 23 22 21 42 42 H 1.08002 * 119.90218 * 180.02562 * 26 24 23 43 43 H 1.09004 * 109.87610 * 59.48932 * 29 9 7 44 44 H 1.08990 * 109.88283 * 298.32272 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6133 1.9797 -1.3937 5 1 1.3949 2.6831 0.5815 6 1 3.4853 1.4760 0.8124 7 6 2.0101 -1.2022 -0.0005 8 1 1.5311 -2.1024 0.3549 9 7 3.3022 -1.2467 -0.4518 10 6 3.9507 -0.2322 -1.3026 11 6 5.0954 -0.9897 -2.0206 12 6 5.5798 -1.9527 -0.9045 13 1 6.2743 -1.4493 -0.2318 14 7 6.1969 -3.1485 -1.4836 15 6 7.0270 -3.9059 -0.7395 16 8 7.2636 -3.5972 0.4092 17 6 7.6613 -5.1364 -1.3350 18 1 8.2012 -4.8682 -2.2432 19 6 6.5760 -6.1691 -1.6649 20 6 7.2394 -7.3556 -2.3687 21 6 8.4596 -7.7873 -1.5953 22 6 8.9892 -9.0448 -1.8346 23 6 10.1088 -9.4723 -1.1489 24 6 10.7082 -8.6411 -0.2168 25 9 11.8041 -9.0574 0.4548 26 6 10.1832 -7.3862 0.0258 27 6 9.0541 -6.9551 -0.6630 28 8 8.5639 -5.7172 -0.3926 29 6 4.2725 -2.3146 -0.1688 30 1 -0.4850 0.8401 0.0004 31 1 3.2414 0.1619 -2.0305 32 1 4.3548 0.5740 -0.6905 33 1 5.8899 -0.3056 -2.3184 34 1 4.7179 -1.5452 -2.8791 35 1 6.0080 -3.3952 -2.4025 36 1 5.8309 -5.7216 -2.3227 37 1 6.0985 -6.5076 -0.7454 38 1 7.5339 -7.0613 -3.3761 39 1 6.5339 -8.1844 -2.4254 40 1 8.5241 -9.6940 -2.5615 41 1 10.5142 -10.4556 -1.3360 42 1 10.6508 -6.7381 0.7522 43 1 3.8921 -3.2678 -0.5361 44 1 4.4553 -2.3746 0.9040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015273480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:25 Heat of formation + Delta-G solvation = -85.802217 kcal Electronic energy + Delta-G solvation = -28181.488546 eV Core-core repulsion = 24013.279755 eV Total energy + Delta-G solvation = -4168.208791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.97774 -42.10939 -40.78955 -39.20770 -38.17592 -35.86795 -35.26943 -34.05263 -31.99754 -31.43921 -31.03124 -29.50983 -27.46571 -25.97957 -24.90470 -23.81529 -22.86576 -22.58257 -21.56706 -21.02750 -19.45800 -19.20929 -18.54299 -18.01415 -17.41594 -17.20283 -17.01339 -16.91514 -16.65857 -16.13407 -15.92769 -15.68066 -15.44280 -15.41593 -15.00415 -14.67898 -14.54862 -14.28907 -14.06420 -14.03157 -13.91915 -13.79866 -13.16750 -13.08421 -12.94201 -12.62442 -12.45641 -12.39050 -12.24339 -12.11366 -12.05159 -11.68231 -11.65788 -11.51147 -10.87726 -10.84760 -10.23734 -9.81336 -9.26237 -9.10074 -8.20164 -5.48092 0.05232 0.22056 1.28388 1.38993 1.40331 1.40957 1.48571 2.38239 2.39378 2.53295 3.02672 3.24644 3.35777 3.46073 3.51178 3.61252 3.64274 3.77013 3.82050 3.89251 4.00534 4.11127 4.13714 4.21263 4.34996 4.43950 4.48432 4.52055 4.79529 4.80611 4.88159 4.92603 4.94010 4.96769 5.00200 5.05775 5.11922 5.14581 5.17855 5.36385 5.42263 5.64017 5.68196 6.07093 6.22575 6.47179 6.72305 7.12166 7.49999 8.04531 8.99528 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.002193 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.678730 B =12766.070505 C =13030.754120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.035 4.035 3 Si 0.947 3.053 4 H -0.256 1.256 5 H -0.308 1.308 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.056 0.944 9 N -0.625 5.625 10 C 0.098 3.902 11 C -0.112 4.112 12 C 0.147 3.853 13 H 0.084 0.916 14 N -0.691 5.691 15 C 0.518 3.482 16 O -0.570 6.570 17 C 0.079 3.921 18 H 0.137 0.863 19 C -0.150 4.150 20 C -0.069 4.069 21 C -0.170 4.170 22 C -0.046 4.046 23 C -0.180 4.180 24 C 0.113 3.887 25 F -0.145 7.145 26 C -0.206 4.206 27 C 0.142 3.858 28 O -0.318 6.318 29 C 0.124 3.876 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.423 0.577 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.130 0.870 43 H 0.040 0.960 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.828 -18.411 -13.854 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.230 4.230 3 Si 0.775 3.225 4 H -0.181 1.181 5 H -0.237 1.237 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.073 0.927 9 N -0.352 5.352 10 C -0.027 4.027 11 C -0.150 4.150 12 C 0.041 3.959 13 H 0.102 0.898 14 N -0.345 5.345 15 C 0.304 3.696 16 O -0.448 6.448 17 C 0.020 3.980 18 H 0.154 0.846 19 C -0.187 4.187 20 C -0.106 4.106 21 C -0.171 4.171 22 C -0.064 4.064 23 C -0.199 4.199 24 C 0.094 3.906 25 F -0.123 7.123 26 C -0.225 4.225 27 C 0.097 3.903 28 O -0.232 6.232 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.262 0.738 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.148 0.852 43 H 0.058 0.942 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 21.870 -18.003 -12.820 31.093 hybrid contribution -0.060 0.905 0.935 1.302 sum 21.810 -17.099 -11.885 30.154 Atomic orbital electron populations 1.69960 1.07180 1.27397 1.55525 1.25649 0.95864 1.00769 1.00714 0.85946 0.77477 0.79973 0.79092 1.18116 1.23684 1.20279 1.18551 0.86071 0.94386 1.37765 0.92652 1.44832 1.09068 1.23798 1.57531 1.22146 0.94905 0.92535 0.93098 1.22971 0.97418 0.97870 0.96791 1.21718 0.92418 0.85667 0.96066 0.89755 1.45554 1.46070 1.26008 1.16835 1.20558 0.78871 0.84352 0.85848 1.90759 1.62392 1.71997 1.19655 1.22445 0.92091 0.91467 0.91993 0.84578 1.22303 0.97344 0.96020 1.03069 1.20621 0.93057 0.98095 0.98818 1.20283 1.00424 0.95724 1.00691 1.21167 0.93480 0.94093 0.97645 1.21366 0.98827 1.01545 0.98169 1.17453 0.85433 0.93215 0.94525 1.91493 1.51536 1.90180 1.79116 1.20499 0.98252 0.97525 1.06237 1.18513 0.92041 0.84420 0.95339 1.86026 1.60186 1.29407 1.47586 1.21782 0.89447 0.92136 0.96805 0.92728 0.92665 0.95964 0.87003 0.87751 0.73767 0.85962 0.91798 0.86698 0.86980 0.80733 0.82194 0.85157 0.94187 0.97412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.16 13.97 21.65 0.30 -59.86 16 2 C -0.04 -2.08 5.43 84.86 0.46 -1.62 16 3 Si 0.95 46.55 24.27 68.60 1.66 48.22 16 4 H -0.26 -11.31 6.49 99.48 0.65 -10.66 16 5 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 6 H -0.28 -13.51 6.66 99.48 0.66 -12.85 16 7 C -0.24 -13.92 10.57 84.03 0.89 -13.03 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 9 N -0.62 -29.78 3.21 -691.98 -2.22 -32.00 16 10 C 0.10 3.82 4.69 86.85 0.41 4.23 16 11 C -0.11 -2.84 6.69 31.99 0.21 -2.63 16 12 C 0.15 4.30 3.24 46.18 0.15 4.45 16 13 H 0.08 2.75 7.69 -2.38 -0.02 2.73 16 14 N -0.69 -14.36 5.06 -436.92 -2.21 -16.57 16 15 C 0.52 13.21 7.19 87.66 0.63 13.84 16 16 O -0.57 -21.45 16.24 15.88 0.26 -21.19 16 17 C 0.08 1.40 3.21 29.98 0.10 1.50 16 18 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.15 -1.83 5.45 30.75 0.17 -1.67 16 20 C -0.07 -0.51 5.86 29.90 0.18 -0.33 16 21 C -0.17 -2.29 5.75 -19.73 -0.11 -2.40 16 22 C -0.05 -0.45 9.66 22.30 0.22 -0.23 16 23 C -0.18 -2.28 10.03 22.30 0.22 -2.06 16 24 C 0.11 2.13 7.30 22.32 0.16 2.29 16 25 F -0.14 -2.99 17.27 44.97 0.78 -2.21 16 26 C -0.21 -4.48 9.91 22.46 0.22 -4.26 16 27 C 0.14 2.95 6.47 22.52 0.15 3.10 16 28 O -0.32 -8.01 9.47 -73.04 -0.69 -8.70 16 29 C 0.12 4.98 6.99 86.73 0.61 5.59 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.06 2.26 6.63 -2.39 -0.02 2.25 16 32 H 0.02 0.92 5.58 -2.39 -0.01 0.91 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.13 8.00 -2.39 -0.02 2.11 16 35 H 0.42 4.95 8.27 -92.71 -0.77 4.19 16 36 H 0.12 0.85 7.85 -2.38 -0.02 0.83 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -83.31 359.63 2.70 -80.62 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.16 Total: 4.93 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.65 Total: 6.77 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -4.13 Total: -108.43 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.43 Total: -29.89 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.66 Total: 48.22 kcal Total: -83.31 2.70 -80.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015273480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.186 kcal (2) G-P(sol) polarization free energy of solvation -83.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds